Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-11-26

AUTHORS

Alexander J. Probst, Thomas Weinmaier, Kasie Raymann, Alexandra Perras, Joanne B. Emerson, Thomas Rattei, Gerhard Wanner, Andreas Klingl, Ivan A. Berg, Marcos Yoshinaga, Bernhard Viehweger, Kai-Uwe Hinrichs, Brian C. Thomas, Sandra Meck, Anna K. Auerbach, Matthias Heise, Arno Schintlmeister, Markus Schmid, Michael Wagner, Simonetta Gribaldo, Jillian F. Banfield, Christine Moissl-Eichinger

ABSTRACT

Subsurface microbial life contributes significantly to biogeochemical cycling, yet it remains largely uncharacterized, especially its archaeal members. This 'microbial dark matter' has been explored by recent studies that were, however, mostly based on DNA sequence information only. Here, we use diverse techniques including ultrastuctural analyses to link genomics to biology for the SM1 Euryarchaeon lineage, an uncultivated group of subsurface archaea. Phylogenomic analyses reveal this lineage to belong to a widespread group of archaea that we propose to classify as a new euryarchaeal order (‘Candidatus Altiarchaeales’). The representative, double-membraned species ‘Candidatus Altiarchaeum hamiconexum’ has an autotrophic metabolism that uses a not-yet-reported Factor420-free reductive acetyl-CoA pathway, confirmed by stable carbon isotopic measurements of archaeal lipids. Our results indicate that this lineage has evolved specific metabolic and structural features like nano-grappling hooks empowering this widely distributed archaeon to predominate anaerobic groundwater, where it may represent an important carbon dioxide sink. More... »

PAGES

5497

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  • Journal

    TITLE

    Nature Communications

    ISSUE

    1

    VOLUME

    5

    Author Affiliations

  • Department of Earth and Planetary Science, University of California, Berkeley, 307 McCone Hall, 94720, Berkeley, CA, USA
  • Division of Computational Systems Biology, University of Vienna, Althanstraße 14, A-1090, Wien, Austria
  • Département de Microbiologie, Institut Pasteur, Unité Biologie Moléculaire du Gene chez les Extrêmophiles, Paris, 75724 Cedex 15, France
  • Department of Internal Medicine, Medical University Graz, Auenbruggerplatz 15, 8036, Graz, Austria
  • Present address: Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CIRES Bldg. Rm. 318, Boulder, CO 80309, USA
  • Department of Biology I, Ludwig Maximilians University of Munich (LMU), Biozentrum, 82152, Planegg-Martinsried, Germany
  • Cell Biology and LOEWE Research Centre for Synthetic Microbiology (Synmikro), Karl-von-Frisch-Str. 8, 35043, Marburg, Germany
  • Department of Microbiology, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104, Freiburg, Germany
  • MARUM-Center for Marine Environmental Sciences and Department of Geosciences, Organic Geochemistry Group, University of Bremen, 28359, Bremen, Germany
  • Department for Microbiology and Archaea Center, University of Regensburg, Universitaetsstrasse 31, 93053, Regensburg, Germany
  • Institute of Experimental and Applied Physics, University of Regensburg, Universitaetsstrasse 31, 93053, Regensburg, Germany
  • Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, Faculty of Life Sciences, University of Vienna, Althanstr. 14, 1090, Vienna, Austria
  • BioTechMed Graz, Krenngasse 37, 8010 Graz, Austria
  • Related Patents

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/ncomms6497

    DOI

    http://dx.doi.org/10.1038/ncomms6497

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1037086599

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/25425419


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