Variation in genomic landscape of clear cell renal cell carcinoma across Europe View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-12

AUTHORS

Ghislaine Scelo, Yasser Riazalhosseini, Liliana Greger, Louis Letourneau, Mar Gonzàlez-Porta, Magdalena B. Wozniak, Mathieu Bourgey, Patricia Harnden, Lars Egevad, Sharon M. Jackson, Mehran Karimzadeh, Madeleine Arseneault, Pierre Lepage, Alexandre How-Kit, Antoine Daunay, Victor Renault, Hélène Blanché, Emmanuel Tubacher, Jeremy Sehmoun, Juris Viksna, Edgars Celms, Martins Opmanis, Andris Zarins, Naveen S. Vasudev, Morag Seywright, Behnoush Abedi-Ardekani, Christine Carreira, Peter J. Selby, Jon J. Cartledge, Graham Byrnes, Jiri Zavadil, Jing Su, Ivana Holcatova, Antonin Brisuda, David Zaridze, Anush Moukeria, Lenka Foretova, Marie Navratilova, Dana Mates, Viorel Jinga, Artem Artemov, Artem Nedoluzhko, Alexander Mazur, Sergey Rastorguev, Eugenia Boulygina, Simon Heath, Marta Gut, Marie-Therese Bihoreau, Doris Lechner, Mario Foglio, Ivo G. Gut, Konstantin Skryabin, Egor Prokhortchouk, Anne Cambon-Thomsen, Johan Rung, Guillaume Bourque, Paul Brennan, Jörg Tost, Rosamonde E. Banks, Alvis Brazma, G. Mark Lathrop

ABSTRACT

The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different European countries with contrasting disease incidence to explore the underlying genomic architecture of RCC. Our findings support previous reports on frequent aberrations in the epigenetic machinery and PI3K/mTOR signalling, and uncover novel pathways and genes affected by recurrent mutations and abnormal transcriptome patterns including focal adhesion, components of extracellular matrix (ECM) and genes encoding FAT cadherins. Furthermore, a large majority of patients from Romania have an unexpected high frequency of A:T>T:A transversions, consistent with exposure to aristolochic acid (AA). These results show that the processes underlying ccRCC tumorigenesis may vary in different populations and suggest that AA may be an important ccRCC carcinogen in Romania, a finding with major public health implications. More... »

PAGES

5135

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/ncomms6135

DOI

http://dx.doi.org/10.1038/ncomms6135

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1001274259

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/25351205


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