Immunochip SNP array identifies novel genetic variants conferring susceptibility to candidaemia View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-12

AUTHORS

Vinod Kumar, Shih-Chin Cheng, Melissa D. Johnson, Sanne P Smeekens, Agnieszka Wojtowicz, Evangelos Giamarellos-Bourboulis, Juha Karjalainen, Lude Franke, Sebo Withoff, Theo S Plantinga, Frank L. van de Veerdonk, Jos W.M. van der Meer, Leo A.B. Joosten, Harry Sokol, Hermann Bauer, Bernhard G. Herrmann, Pierre-Yves Bochud, Oscar Marchetti, John R. Perfect, Ramnik J. Xavier, Bart Jan Kullberg, Cisca Wijmenga, Mihai G. Netea

ABSTRACT

Candidaemia is the fourth most common cause of bloodstream infection, with a high mortality rate of up to 40%. Identification of host genetic factors that confer susceptibility to candidaemia may aid in designing adjunctive immunotherapeutic strategies. Here we hypothesize that variation in immune genes may predispose to candidaemia. We analyse 118,989 single-nucleotide polymorphisms (SNPs) across 186 loci known to be associated with immune-mediated diseases in the largest candidaemia cohort to date of 217 patients of European ancestry and a group of 11,920 controls. We validate the significant associations by comparison with a disease-matched control group. We observe significant association between candidaemia and SNPs in the CD58 (P = 1.97 × 10(-11); odds ratio (OR) = 4.68), LCE4A-C1orf68 (P = 1.98 × 10(-10); OR = 4.25) and TAGAP (P = 1.84 × 10(-8); OR = 2.96) loci. Individuals carrying two or more risk alleles have an increased risk for candidaemia of 19.4-fold compared with individuals carrying no risk allele. We identify three novel genetic risk factors for candidaemia, which we subsequently validate for their role in antifungal host defence. More... »

PAGES

4675

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/ncomms5675

    DOI

    http://dx.doi.org/10.1038/ncomms5675

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1033868473

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/25197941


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