Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-03-29

AUTHORS

Qiao Fan, Virginie J. M. Verhoeven, Robert Wojciechowski, Veluchamy A. Barathi, Pirro G. Hysi, Jeremy A. Guggenheim, René Höhn, Veronique Vitart, Anthony P. Khawaja, Kenji Yamashiro, S Mohsen Hosseini, Terho Lehtimäki, Yi Lu, Toomas Haller, Jing Xie, Cécile Delcourt, Mario Pirastu, Juho Wedenoja, Puya Gharahkhani, Cristina Venturini, Masahiro Miyake, Alex W. Hewitt, Xiaobo Guo, Johanna Mazur, Jenifer E. Huffman, Katie M. Williams, Ozren Polasek, Harry Campbell, Igor Rudan, Zoran Vatavuk, James F. Wilson, Peter K. Joshi, George McMahon, Beate St Pourcain, David M. Evans, Claire L. Simpson, Tae-Hwi Schwantes-An, Robert P. Igo, Alireza Mirshahi, Audrey Cougnard-Gregoire, Céline Bellenguez, Maria Blettner, Olli Raitakari, Mika Kähönen, Ilkka Seppälä, Tanja Zeller, Thomas Meitinger, Janina S. Ried, Christian Gieger, Laura Portas, Elisabeth M. van Leeuwen, Najaf Amin, André G. Uitterlinden, Fernando Rivadeneira, Albert Hofman, Johannes R. Vingerling, Ya Xing Wang, Xu Wang, Eileen Tai-Hui Boh, M. Kamran Ikram, Charumathi Sabanayagam, Preeti Gupta, Vincent Tan, Lei Zhou, Candice E. H. Ho, Wan’e Lim, Roger W. Beuerman, Rosalynn Siantar, E-Shyong Tai, Eranga Vithana, Evelin Mihailov, Chiea-Chuen Khor, Caroline Hayward, Robert N. Luben, Paul J. Foster, Barbara E. K. Klein, Ronald Klein, Hoi-Suen Wong, Paul Mitchell, Andres Metspalu, Tin Aung, Terri L. Young, Mingguang He, Olavi Pärssinen, Cornelia M. van Duijn, Jie Jin Wang, Cathy Williams, Jost B. Jonas, Yik-Ying Teo, David A. Mackey, Konrad Oexle, Nagahisa Yoshimura, Andrew D. Paterson, Norbert Pfeiffer, Tien-Yin Wong, Paul N. Baird, Dwight Stambolian, Joan E. Bailey Wilson, Ching-Yu Cheng, Christopher J. Hammond, Caroline C. W. Klaver, Seang-Mei Saw, Consortium for Refractive Error and Myopia, Jugnoo S. Rahi, Jean-François Korobelnik, John P. Kemp, Nicholas J. Timpson, George Davey Smith, Jamie E. Craig, Kathryn P. Burdon, Rhys D. Fogarty, Sudha K. Iyengar, Emily Chew, Sarayut Janmahasatian, Nicholas G. Martin, Stuart MacGregor, Liang Xu, Maria Schache, Vinay Nangia, Songhomitra Panda-Jonas, Alan F. Wright, Jeremy R. Fondran, Jonathan H. Lass, Sheng Feng, Jing Hua Zhao, Kay-Tee Khaw, Nick J. Wareham, Taina Rantanen, Jaakko Kaprio, Chi Pui Pang, Li Jia Chen, Pancy O. Tam, Vishal Jhanji, Alvin L. Young, Angela Döring, Leslie J. Raffel, Mary-Frances Cotch, Xiaohui Li, Shea Ping Yip, Maurice K.H. Yap, Ginevra Biino, Simona Vaccargiu, Maurizio Fossarello, Brian Fleck, Seyhan Yazar, Jan Willem L. Tideman, Milly Tedja, Margaret M. Deangelis, Margaux Morrison, Lindsay Farrer, Xiangtian Zhou, Wei Chen, Nobuhisa Mizuki, Akira Meguro, Kari Matti Mäkelä

ABSTRACT

Myopia is the most common human eye disorder and it results from complex genetic and environmental causes. The rapidly increasing prevalence of myopia poses a major public health challenge. Here, the CREAM consortium performs a joint meta-analysis to test single-nucleotide polymorphism (SNP) main effects and SNP × education interaction effects on refractive error in 40,036 adults from 25 studies of European ancestry and 10,315 adults from 9 studies of Asian ancestry. In European ancestry individuals, we identify six novel loci (FAM150B-ACP1, LINC00340, FBN1, DIS3L-MAP2K1, ARID2-SNAT1 and SLC14A2) associated with refractive error. In Asian populations, three genome-wide significant loci AREG, GABRR1 and PDE10A also exhibit strong interactions with education (P<8.5 × 10(-5)), whereas the interactions are less evident in Europeans. The discovery of these loci represents an important advance in understanding how gene and environment interactions contribute to the heterogeneity of myopia. More... »

PAGES

11008

Journal

TITLE

Nature Communications

ISSUE

N/A

VOLUME

7

Author Affiliations

  • Duke NUS Graduate Medical School
  • Erasmus University Medical Center
  • Johns Hopkins University
  • National University Health System
  • King's College London
  • Cardiff University
  • University Children’s Hospital Bern
  • University of Edinburgh
  • University of Cambridge
  • Kyoto University
  • University of Tampere
  • QIMR Berghofer Medical Research Institute
  • University of Tartu
  • University of Melbourne
  • Délégation Aquitaine, Poitou-Charentes
  • National Research Council
  • Helsinki University Central Hospital
  • University College London
  • University of Tasmania
  • Sun Yat-sen University
  • University Medical Center of the Johannes Gutenberg University Mainz
  • University of Split
  • Sisters of Charity Hospital
  • University of Bristol
  • Max Planck Institute for Psycholinguistics
  • University of Queensland
  • University of Tennessee Health Science Center
  • National Human Genome Research Institute
  • Case Western Reserve University
  • Université Lille 2 Droit et Santé
  • Turku University Hospital
  • University Medical Center Hamburg-Eppendorf
  • Wageningen University & Research
  • Capital Medical University
  • Singapore National Eye Center
  • Tan Tock Seng Hospital
  • National University of Singapore
  • Genome Institute of Singapore
  • National Institute for Health Research
  • University of Wisconsin–Madison
  • University of Sydney
  • University of Jyväskylä
  • Heidelberg University
  • University of Pennsylvania
  • University of Bordeaux
  • Flinders University
  • National Eye Institute
  • Suraj Eye Institute
  • Institute of Metabolic Science
  • National Institute for Health and Welfare
  • Chinese University of Hong Kong
  • Helmholtz Zentrum München
  • Cedars-Sinai Medical Center
  • University of California Los Angeles
  • Hong Kong Polytechnic University
  • Istituto di Genetica Molecolare
  • Princess Alexandra Eye Pavilion
  • University of Utah
  • Boston University
  • Wenzhou Medical College
  • Yokohama City University
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/ncomms11008

    DOI

    http://dx.doi.org/10.1038/ncomms11008

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1005797783

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/27020472


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