Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-12

AUTHORS

Sonja I. Berndt, Nicola J. Camp, Christine F. Skibola, Joseph Vijai, Zhaoming Wang, Jian Gu, Alexandra Nieters, Rachel S. Kelly, Karin E. Smedby, Alain Monnereau, Wendy Cozen, Angela Cox, Sophia S. Wang, Qing Lan, Lauren R. Teras, Moara Machado, Meredith Yeager, Angela R. Brooks-Wilson, Patricia Hartge, Mark P. Purdue, Brenda M. Birmann, Claire M. Vajdic, Pierluigi Cocco, Yawei Zhang, Graham G. Giles, Anne Zeleniuch-Jacquotte, Charles Lawrence, Rebecca Montalvan, Laurie Burdett, Amy Hutchinson, Yuanqing Ye, Timothy G. Call, Tait D. Shanafelt, Anne J. Novak, Neil E. Kay, Mark Liebow, Julie M. Cunningham, Cristine Allmer, Henrik Hjalgrim, Hans-Olov Adami, Mads Melbye, Bengt Glimelius, Ellen T. Chang, Martha Glenn, Karen Curtin, Lisa A. Cannon-Albright, W Ryan Diver, Brian K. Link, George J. Weiner, Lucia Conde, Paige M. Bracci, Jacques Riby, Donna K. Arnett, Degui Zhi, Justin M. Leach, Elizabeth A. Holly, Rebecca D. Jackson, Lesley F. Tinker, Yolanda Benavente, Núria Sala, Delphine Casabonne, Nikolaus Becker, Paolo Boffetta, Paul Brennan, Lenka Foretova, Marc Maynadie, James McKay, Anthony Staines, Kari G. Chaffee, Sara J. Achenbach, Celine M. Vachon, Lynn R. Goldin, Sara S. Strom, Jose F. Leis, J. Brice Weinberg, Neil E. Caporaso, Aaron D. Norman, Anneclaire J. De Roos, Lindsay M. Morton, Richard K. Severson, Elio Riboli, Paolo Vineis, Rudolph Kaaks, Giovanna Masala, Elisabete Weiderpass, María- Dolores Chirlaque, Roel C. H. Vermeulen, Ruth C. Travis, Melissa C. Southey, Roger L. Milne, Demetrius Albanes, Jarmo Virtamo, Stephanie Weinstein, Jacqueline Clavel, Tongzhang Zheng, Theodore R. Holford, Danylo J. Villano, Ann Maria, John J. Spinelli, Randy D. Gascoyne, Joseph M. Connors, Kimberly A. Bertrand, Edward Giovannucci, Peter Kraft, Anne Kricker, Jenny Turner, Maria Grazia Ennas, Giovanni M. Ferri, Lucia Miligi, Liming Liang, Baoshan Ma, Jinyan Huang, Simon Crouch, Ju-Hyun Park, Nilanjan Chatterjee, Kari E. North, John A. Snowden, Josh Wright, Joseph F. Fraumeni, Kenneth Offit, Xifeng Wu, Silvia de Sanjose, James R. Cerhan, Stephen J. Chanock, Nathaniel Rothman, Susan L. Slager

ABSTRACT

Chronic lymphocytic leukemia (CLL) is a common lymphoid malignancy with strong heritability. To further understand the genetic susceptibility for CLL and identify common loci associated with risk, we conducted a meta-analysis of four genome-wide association studies (GWAS) composed of 3,100 cases and 7,667 controls with follow-up replication in 1,958 cases and 5,530 controls. Here we report three new loci at 3p24.1 (rs9880772, EOMES, P=2.55 × 10(-11)), 6p25.2 (rs73718779, SERPINB6, P=1.97 × 10(-8)) and 3q28 (rs9815073, LPP, P=3.62 × 10(-8)), as well as a new independent SNP at the known 2q13 locus (rs9308731, BCL2L11, P=1.00 × 10(-11)) in the combined analysis. We find suggestive evidence (P<5 × 10(-7)) for two additional new loci at 4q24 (rs10028805, BANK1, P=7.19 × 10(-8)) and 3p22.2 (rs1274963, CSRNP1, P=2.12 × 10(-7)). Pathway analyses of new and known CLL loci consistently show a strong role for apoptosis, providing further evidence for the importance of this biological pathway in CLL susceptibility. More... »

PAGES

10933

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  • Journal

    TITLE

    Nature Communications

    ISSUE

    1

    VOLUME

    7

    Author Affiliations

  • National Cancer Institute
  • University of Utah
  • University of California, Berkeley
  • Memorial Sloan Kettering Cancer Center
  • The University of Texas MD Anderson Cancer Center
  • University Medical Center Freiburg
  • Imperial College London
  • Institut Bergonié
  • University of Southern California
  • University of Sheffield
  • City Of Hope National Medical Center
  • American Cancer Society
  • Universidade Federal de Minas Gerais
  • Simon Fraser University
  • Brigham and Women's Hospital
  • UNSW Australia
  • University of Cagliari
  • Yale University
  • University of Melbourne
  • New York University Langone Medical Center
  • Westat (United States)
  • Mayo Clinic
  • Statens Serum Institut
  • Karolinska Institute
  • Stanford University
  • Uppsala University
  • Huntsman Cancer Institute
  • George E. Wahlen Department of VA Medical Center
  • University of Iowa
  • University of California, San Francisco
  • University of Alabama at Birmingham
  • The Ohio State University
  • Fred Hutchinson Cancer Research Center
  • Instituto de Salud Carlos III
  • German Cancer Research Center
  • Icahn School of Medicine at Mount Sinai
  • International Agency For Research On Cancer
  • Centre Hospitalier Regional Universitaire De Dijon
  • Dublin City University
  • Mayo Clinic
  • Duke University
  • Drexel University
  • Wayne State University
  • Human Genetics Foundation
  • Istituto per lo Studio e la Prevenzione Oncologica
  • Folkhälsans Forskningscentrum
  • University Medical Center Utrecht
  • University of Oxford
  • National Institute for Health and Welfare
  • Paris Descartes University
  • University of British Columbia
  • Harvard University
  • University of Sydney
  • Douglass Hanly Moir Pathology
  • University of Bari Aldo Moro
  • Italian Association for Cancer Research
  • Dalian Maritime University
  • University of York
  • Dongguk University
  • University of North Carolina at Chapel Hill
  • Royal Hallamshire Hospital
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/ncomms10933

    DOI

    http://dx.doi.org/10.1038/ncomms10933

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1026617157

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/26956414


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