Minimum Information about a Biosynthetic Gene cluster View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2015-08-18

AUTHORS

Marnix H Medema, Renzo Kottmann, Pelin Yilmaz, Matthew Cummings, John B Biggins, Kai Blin, Irene de Bruijn, Yit Heng Chooi, Jan Claesen, R Cameron Coates, Pablo Cruz-Morales, Srikanth Duddela, Stephanie Düsterhus, Daniel J Edwards, David P Fewer, Neha Garg, Christoph Geiger, Juan Pablo Gomez-Escribano, Anja Greule, Michalis Hadjithomas, Anthony S Haines, Eric J N Helfrich, Matthew L Hillwig, Keishi Ishida, Adam C Jones, Carla S Jones, Katrin Jungmann, Carsten Kegler, Hyun Uk Kim, Peter Kötter, Daniel Krug, Joleen Masschelein, Alexey V Melnik, Simone M Mantovani, Emily A Monroe, Marcus Moore, Nathan Moss, Hans-Wilhelm Nützmann, Guohui Pan, Amrita Pati, Daniel Petras, F Jerry Reen, Federico Rosconi, Zhe Rui, Zhenhua Tian, Nicholas J Tobias, Yuta Tsunematsu, Philipp Wiemann, Elizabeth Wyckoff, Xiaohui Yan, Grace Yim, Fengan Yu, Yunchang Xie, Bertrand Aigle, Alexander K Apel, Carl J Balibar, Emily P Balskus, Francisco Barona-Gómez, Andreas Bechthold, Helge B Bode, Rainer Borriss, Sean F Brady, Axel A Brakhage, Patrick Caffrey, Yi-Qiang Cheng, Jon Clardy, Russell J Cox, René De Mot, Stefano Donadio, Mohamed S Donia, Wilfred A van der Donk, Pieter C Dorrestein, Sean Doyle, Arnold J M Driessen, Monika Ehling-Schulz, Karl-Dieter Entian, Michael A Fischbach, Lena Gerwick, William H Gerwick, Harald Gross, Bertolt Gust, Christian Hertweck, Monica Höfte, Susan E Jensen, Jianhua Ju, Leonard Katz, Leonard Kaysser, Jonathan L Klassen, Nancy P Keller, Jan Kormanec, Oscar P Kuipers, Tomohisa Kuzuyama, Nikos C Kyrpides, Hyung-Jin Kwon, Sylvie Lautru, Rob Lavigne, Chia Y Lee, Bai Linquan, Xinyu Liu, Wen Liu, Andriy Luzhetskyy, Taifo Mahmud, Yvonne Mast, Carmen Méndez, Mikko Metsä-Ketelä, Jason Micklefield, Douglas A Mitchell, Bradley S Moore, Leonilde M Moreira, Rolf Müller, Brett A Neilan, Markus Nett, Jens Nielsen, Fergal O'Gara, Hideaki Oikawa, Anne Osbourn, Marcia S Osburne, Bohdan Ostash, Shelley M Payne, Jean-Luc Pernodet, Miroslav Petricek, Jörn Piel, Olivier Ploux, Jos M Raaijmakers, José A Salas, Esther K Schmitt, Barry Scott, Ryan F Seipke, Ben Shen, David H Sherman, Kaarina Sivonen, Michael J Smanski, Margherita Sosio, Evi Stegmann, Roderich D Süssmuth, Kapil Tahlan, Christopher M Thomas, Yi Tang, Andrew W Truman, Muriel Viaud, Jonathan D Walton, Christopher T Walsh, Tilmann Weber, Gilles P van Wezel, Barrie Wilkinson, Joanne M Willey, Wolfgang Wohlleben, Gerard D Wright, Nadine Ziemert, Changsheng Zhang, Sergey B Zotchev, Rainer Breitling, Eriko Takano, Frank Oliver Glöckner

ABSTRACT

A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard. More... »

PAGES

625-631

Journal

TITLE

Nature Chemical Biology

ISSUE

9

VOLUME

11

Author Affiliations

  • Present address: Bioinformatics Group, Wageningen University, Wageningen, the Netherlands.
  • Microbial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Bremen, Germany
  • Manchester Centre for Synthetic Biology of Fine and Speciality Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, Manchester, UK
  • Laboratory of Genetically Encoded Small Molecules, Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA
  • Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Hørsholm, Denmark
  • Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, the Netherlands
  • School of Chemistry and Biochemistry, University of Western Australia, Perth, Western Australia, Australia
  • California Institute for Quantitative Biosciences, University of California San Francisco, San Francisco, California, USA
  • Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA
  • Evolution of Metabolic Diversity Laboratory, Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (Cinvestav-IPN), Irapuato, Guanajuato, México
  • Helmholtz Centre for Infection Research and Department of Pharmaceutical Biotechnology, Helmholtz Institute for Pharmaceutical Research, Saarland University, Saarbrücken, Germany
  • Institute for Molecular Biosciences, Goethe University, Frankfurt am Main, Germany
  • Department of Chemistry and Biochemistry, California State University, Chico, California, USA
  • Microbiology and Biotechnology Division, Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland
  • Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, USA
  • Department of Molecular Microbiology, John Innes Centre, Norwich Research Park, Norwich, UK
  • Department of Pharmaceutical Biology and Biotechnology, Albert-Ludwigs-University of Freiburg, Freiburg, Germany
  • School of Biosciences, University of Birmingham, Birmingham, UK
  • Institute of Microbiology, Eidgenössische Technische Hochschule (ETH) Zürich, Zürich, Switzerland
  • Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
  • Leibniz Institute for Natural Product Research and Infection Biology (HKI), Jena, Germany
  • Gordon and Betty Moore Foundation, Palo Alto, California, USA
  • Sustainable Studies Program, Roosevelt University Chicago, Illinois, USA
  • Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe Universität Frankfurt, Fachbereich Biowissenschaften, Frankfurt, Germany
  • BioInformatics Research Center, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
  • Laboratory of Food Microbiology, KU Leuven, Heverlee, Belgium
  • Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA
  • Department of Biology, William Paterson University, Wayne, New Jersey, USA
  • Department of Biology, Memorial University of Newfoundland, St. John's, Newfoundland, Canada
  • Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich, UK
  • Department of Chemistry, The Scripps Research Institute, Jupiter, Florida, USA
  • Institut für Chemie, Technische Universität Berlin, Berlin, Germany
  • BIOMERIT Research Centre, School of Microbiology, University College Cork–National University of Ireland, Cork, Ireland
  • Departamento de Bioquímica y Genómica Microbianas, IBCE, Montevideo, Uruguay
  • Department of Chemical and Biomolecular Engineering, University of California Berkeley, Berkeley, California, USA
  • State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, China
  • Department of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, Japan
  • Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, Wisconsin, USA
  • Institute for Cellular and Molecular Biology, The University of Texas, Austin, Texas, USA
  • Department of Biochemistry and Biomedical Sciences, The M.G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada
  • Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, USA
  • Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Key Laboratory of Marine Materia Medica, RNAM Center for Marine Microbiology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
  • Dynamique des Génomes et Adaptation Microbienne, Université de Lorraine and Institut National de la Recherche Agronomique (INRA), Unité Mixte de Recherche (UMR) 1128, Vandœuvre-lès-Nancy, France
  • German Centre for Infection Research (DZIF), Partner Site Tübingen, Tübingen, Germany
  • Infectious Disease Research, Merck Research Laboratories, Kenilworth, New Jersey, USA
  • Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts, USA
  • Buchmann Institute for Molecular Life Sciences (BMLS), Goethe Universität Frankfurt, Frankfurt, Germany
  • Fachbereich Phytomedizin, Albrecht Thaer Institut, Humboldt Universität Berlin, Berlin, Germany
  • UCD School of Biomolecular and Biomedical Science, University College Dublin, Dublin, Ireland
  • UNT System College of Pharmacy, University of North Texas Health Science Center, Fort Worth, Texas, USA
  • Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA
  • School of Chemistry, University of Bristol, Bristol, UK
  • Centre of Microbial and Plant Genetics, Faculty of Bioscience Engineering, University of Leuven, Heverlee, Belgium
  • Naicons Srl, Milano, Italy
  • Department of Molecular Biology, Princeton University, Princeton, New Jersey, USA
  • Howard Hughes Medical Institute, USA
  • Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, California, USA
  • Department of Biology, Maynooth University, Maynooth, County Kildare, Ireland
  • Department of Molecular Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen, Groningen, the Netherlands
  • Department of Pathobiology, Functional Microbiology, Institute of Microbiology, University of Veterinary Medicine Vienna, Vienna, Austria
  • Friedrich Schiller University, Jena, Germany
  • Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
  • Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada
  • Synthetic Biology Engineering Research Center (SynBERC), University of California Emeryville, Emeryville, California, USA
  • Department of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA
  • Department of Bacteriology, University of Wisconsin–Madison, Madison, Wisconsin, USA
  • Institute of Molecular Biology, Slovak Academy of Sciences, Bratislava, Slovak Republic
  • Department of Molecular Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, the Netherlands
  • Biotechnology Research Center, The University of Tokyo, Tokyo, Japan
  • Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia
  • Division of Bioscience and Bioinformatics, Myongji University, Yongin-si, Gyeonggi-Do, South Korea
  • Institute of Integrative Biology of the Cell (I2BC), Commissariat à l'Energie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Orsay, France
  • Laboratory of Gene Technology, KU Leuven, Heverlee, Belgium
  • Department of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA
  • School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, China
  • Department of Pharmaceutical Sciences, Oregon State University, Corvallis, Oregon, USA
  • Microbiology/Biotechnology, Interfaculty Institute of Microbiology and Infection Medicine, Faculty of Science, University of Tübingen, Tübingen, Germany
  • Instituto Universitario de Oncología del Principado de Asturias (I.U.O.P.A), Universidad de Oviedo, Oviedo, Spain
  • Department of Biochemistry, University of Turku, Turku, Finland
  • School of Chemistry, University of Manchester, Manchester, UK
  • Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, USA
  • Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Lisboa, Portugal
  • School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia
  • Department of Chemical and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
  • Curtin University, School of Biomedical Sciences, Perth, Western Australia, Australia
  • Division of Chemistry, Graduate School of Science, Hokkaido University, Sapporo, Japan
  • Department of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA
  • Department of Genetics and Biotechnology, Ivan Franko National University of Lviv, Lviv, Ukraine
  • Institute of Microbiology, Academy of Sciences of the Czech Republic (ASCR), Prague, Czech Republic
  • Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, Université Paris Diderot, Paris, France
  • Departamento de Biología Funcional, Universidad de Oviedo, Oviedo, Spain
  • Novartis Institutes for BioMedical Research, Novartis Campus, Basel, Switzerland
  • Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand
  • Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK
  • Molecular Therapeutics and Natural Products Library Initiative, The Scripps Research Institute, Jupiter, Florida, USA
  • BioTechnology Institute, University of Minnesota–Twin Cities, Saint Paul, Minnesota, USA
  • Department of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, California, USA
  • Unité BIOlogie et GEstion des Risques en agriculture (BIOGER), Institut National de la Recherche Agronomique (INRA), Grignon, France
  • Department of Energy Great Lakes Bioenergy Research Center and Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan, USA
  • Chemistry, Engineering & Medicine for Human Health (ChEM-H) Institute, Stanford University, Stanford, California, USA
  • Molecular Biotechnology, Institute of Biology, Leiden University, Leiden, the Netherlands
  • Hofstra North Shore–Long Island Jewish School of Medicine, Hempstead, New York, USA
  • Department of Biotechnology, Norwegian University of Science and Technology, Trondheim, Norway
  • Jacobs University Bremen gGmbH, Bremen, Germany
  • From Grant

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nchembio.1890

    DOI

    http://dx.doi.org/10.1038/nchembio.1890

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/26284661


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