The minimum information about a genome sequence (MIGS) specification View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2008-05-08

AUTHORS

Dawn Field, George Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J Allen, Samuel V Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Claude dePamphilis, Robert Edwards, Nadeem Faruque, Robert Feldman, Jack Gilbert, Paul Gilna, Frank Oliver Glöckner, Philip Goldstein, Robert Guralnick, Dan Haft, David Hancock, Henning Hermjakob, Christiane Hertz-Fowler, Phil Hugenholtz, Ian Joint, Leonid Kagan, Matthew Kane, Jessie Kennedy, George Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos Kyrpides, Jim Leebens-Mack, Suzanna E Lewis, Kelvin Li, Allyson L Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer Martiny, Barbara Methe, Ilene Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita Proctor, Owen White, Susanna-Assunta Sansone, Andrew Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah Turner, David Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth Wilson, Anil Wipat

ABSTRACT

With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international working bodies. To tackle the issues surrounding the development of better descriptions of genomic investigations, we have formed the Genomic Standards Consortium (GSC). Here, we introduce the minimum information about a genome sequence (MIGS) specification with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange. As part of its wider goals, the GSC also supports improving the 'transparency' of the information contained in existing genomic databases. More... »

PAGES

541-547

Journal

TITLE

Nature Biotechnology

ISSUE

5

VOLUME

26

Author Affiliations

  • Natural Environmental Research Council Centre for Ecology and Hydrology, OX1 3SR, Oxford, UK
  • Michigan State University, 48824, East Lansing, Michigan, USA
  • NERC Environmental Bioinformatics Centre, Oxford Centre for Ecology and Hydrology, Oxford, OX1 3SR, UK
  • J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, 20850, Rockville, Maryland, USA
  • European Molecular Biology Laboratory (EMBL) Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, CB10 1SD, Hinxton, Cambridge, UK
  • National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, 20894, Bethesda, Maryland, USA
  • Sanger Institute, Wellcome Trust Genome Campus, CB10 1SA, Hinxton, Cambridge, UK
  • Plymouth Marine Laboratory, Prospect Place, PL1 3DH, Plymouth, UK
  • Institute for Genome Sciences and Department of Epidemiology and Preventive Medicine, University of Maryland School of Medicine, 20 Penn Street, 21201, Baltimore, Maryland, USA
  • Department of Biology, University of York Box 373, YO10 5YW, York, UK
  • Department of Earth Sciences, National Institute of Environmental eScience, University of Cambridge, Downing Street, CB2 3EQ, Cambridge, UK
  • US Department of Energy (DOE) Joint Genome Institute, 2800 Mitchell Drive, 94598, Walnut Creek, California, USA
  • Department of Applied Mathematics and Computer Science, Ghent University, Krijgslaan 281 S9, B-9000, Ghent, Belgium
  • BCCM/LMG Bacteria Collection, Ghent University, K.L. Ledeganckstraat 35, B-9000, Ghent, Belgium
  • Penn State University, 208 Mueller Laboratory, University Park, 16802, Pennsylvania, USA
  • Mathematics and Computer Science Division, Argonne National Laboratory, 60439, Argonne, Illinois, USA
  • SymBio Corporation, 1455 Adams Drive, Menlo Park, 94025, California, USA
  • California Institute for Telecommunications and Information Technology (Calit2), a University of California San Diego (UCSD)/University of California Irvine partnership, 9500 Gilman Drive, 92093, La Jolla, California, USA
  • Microbial Genomics Group, Max Planck Institute for Marine Microbiology and Jacobs University Bremen, 28359, Bremen, Germany
  • Department of Ecology and Evolutionary Biology and University of Colorado Natural History Museum, 218 UCB, University of Colorado, 80309, Boulder, Colorado, USA
  • Microbial Ecology Program, DOE Joint Genome Institute, 2800 Mitchell Drive, Building 400-404, 94598, Walnut Creek, California, USA
  • The National Science Foundation, 4201 Wilson Boulevard, 22230, Arlington, Virginia, USA
  • School of Computing, Napier University, Merchiston Campus, 10 Colington Road Edinburgh, EH10 5DT, Scotland, UK
  • Department of Terrestrial Microbial Ecology, Netherlands Institute of Ecology, Centre for Terrestrial Ecology, PO Box 40, 6666, Heteren, ZG, Netherlands
  • Seattle Children's Hospital Research Institute, 1900 9th Avenue, 98101, Seattle, Washington, USA
  • Genome Biology Program, DOE Joint Genome Institute, 2800 Mitchell Drive, Building 400-404, 94598, Walnut Creek, California, USA
  • Department of Plant Biology, University of Georgia, 30602-7271, Athens, Georgia, USA
  • Department of Molecular and Cell Biology, University of California, 539 Life Sciences Addition, 94720-3200, Berkeley, California, USA
  • Centre for Integrative Systems Biology of Ageing and Nutrition (CISBAN), Henry Wellcome Laboratory for Biogerontology Research, Newcastle University, Newcastle General Hospital, Newcastle upon Tyne, NE4 6BE, UK
  • School of Computing Science, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK
  • Computational Research Division, Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, 94720, Berkeley, California, USA
  • Department of Ecology and Evolutionary Biology, University of California, 455 Steinhaus Hall, 92697, Irvine, California, USA
  • Weatherall Institute of Molecular Medicine and University of Oxford Department of Paediatrics, Molecular Infectious Diseases Group, John Radcliffe Hospital, OX3 9DU, Headington, Oxford, UK
  • Department of Biology, Howard University, 415 College Street, NW, 20059, DC, Washington, USA
  • SIMBIOS Centre, University of Abertay Dundee, DD1 1HG, Dundee, UK
  • School of Computer Science, University of Manchester, M13 9PL, Manchester, UK
  • Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, 411-8540, Mishima, Shizuoka, Japan
  • Center for Biological Sequence Analysis, The Technical University of Denmark, Lyngby, DK-2800 Kgs., Lyngby, Denmark
  • Department of Molecular Biology, University of Wyoming, 82071, Laramie, Wyoming, USA
  • Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, 14th Floor Blockley Hall, 423 Guardian Drive, 19104, Philadelphia, Pennsylvania, USA
  • Department of Biology, LTER Network Office, University of New Mexico, 87171, Albuquerque, New Mexico, USA
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nbt1360

    DOI

    http://dx.doi.org/10.1038/nbt1360

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1038439506

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/18464787


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