Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-08-09

AUTHORS

Mingxun Wang, Jeremy J Carver, Vanessa V Phelan, Laura M Sanchez, Neha Garg, Yao Peng, Don Duy Nguyen, Jeramie Watrous, Clifford A Kapono, Tal Luzzatto-Knaan, Carla Porto, Amina Bouslimani, Alexey V Melnik, Michael J Meehan, Wei-Ting Liu, Max Crüsemann, Paul D Boudreau, Eduardo Esquenazi, Mario Sandoval-Calderón, Roland D Kersten, Laura A Pace, Robert A Quinn, Katherine R Duncan, Cheng-Chih Hsu, Dimitrios J Floros, Ronnie G Gavilan, Karin Kleigrewe, Trent Northen, Rachel J Dutton, Delphine Parrot, Erin E Carlson, Bertrand Aigle, Charlotte F Michelsen, Lars Jelsbak, Christian Sohlenkamp, Pavel Pevzner, Anna Edlund, Jeffrey McLean, Jörn Piel, Brian T Murphy, Lena Gerwick, Chih-Chuang Liaw, Yu-Liang Yang, Hans-Ulrich Humpf, Maria Maansson, Robert A Keyzers, Amy C Sims, Andrew R Johnson, Ashley M Sidebottom, Brian E Sedio, Andreas Klitgaard, Charles B Larson, Cristopher A Boya P, Daniel Torres-Mendoza, David J Gonzalez, Denise B Silva, Lucas M Marques, Daniel P Demarque, Egle Pociute, Ellis C O'Neill, Enora Briand, Eric J N Helfrich, Eve A Granatosky, Evgenia Glukhov, Florian Ryffel, Hailey Houson, Hosein Mohimani, Jenan J Kharbush, Yi Zeng, Julia A Vorholt, Kenji L Kurita, Pep Charusanti, Kerry L McPhail, Kristian Fog Nielsen, Lisa Vuong, Maryam Elfeki, Matthew F Traxler, Niclas Engene, Nobuhiro Koyama, Oliver B Vining, Ralph Baric, Ricardo R Silva, Samantha J Mascuch, Sophie Tomasi, Stefan Jenkins, Venkat Macherla, Thomas Hoffman, Vinayak Agarwal, Philip G Williams, Jingqui Dai, Ram Neupane, Joshua Gurr, Andrés M C Rodríguez, Anne Lamsa, Chen Zhang, Kathleen Dorrestein, Brendan M Duggan, Jehad Almaliti, Pierre-Marie Allard, Prasad Phapale, Louis-Felix Nothias, Theodore Alexandrov, Marc Litaudon, Jean-Luc Wolfender, Jennifer E Kyle, Thomas O Metz, Tyler Peryea, Dac-Trung Nguyen, Danielle VanLeer, Paul Shinn, Ajit Jadhav, Rolf Müller, Katrina M Waters, Wenyuan Shi, Xueting Liu, Lixin Zhang, Rob Knight, Paul R Jensen, Bernhard Ø Palsson, Kit Pogliano, Roger G Linington, Marcelino Gutiérrez, Norberto P Lopes, William H Gerwick, Bradley S Moore, Pieter C Dorrestein, Nuno Bandeira

ABSTRACT

GNPS is an open-access community-curated analysis platform for sharing natural product mass spectrometry data that enables continuous, automatic reanalysis of deposited 'living' data sets.

PAGES

828-837

References to SciGraph publications

Journal

TITLE

Nature Biotechnology

ISSUE

8

VOLUME

34

Author Affiliations

  • Center for Computational Mass Spectrometry, UC San Diego, La Jolla, California, USA
  • Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, California, USA
  • Department of Chemistry and Biochemistry, UC San Diego, La Jolla, California, USA
  • Department of Microbiology and Immunology, Stanford University, Palo Alto, California, USA
  • Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, California, USA
  • Sirenas Marine Discovery, San Diego, California, USA
  • Centro de Ciencias Genómicas, Universidad Nacional Autonoma de Mexico, Cuernavaca, Mexico
  • Salk Institute, Salk Institute, La Jolla, California, USA
  • Biology Department, San Diego State University, San Diego, California, USA
  • Center for Drug Discovery and Biodiversity, INDICASAT, City of Knowledge, Panama
  • Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California, USA
  • FAS Center for Systems Biology, Harvard, Cambridge, Massachusetts, USA
  • Produits naturels – Synthèses – Chimie Médicinale, University of Rennes 1, Rennes Cedex, France
  • Department of Chemistry, University of Minnesota, Minneapolis, Minnesota, USA
  • Dynamique des Génomes et Adaptation Microbienne, University of Lorraine, Vandœuvre-lès-Nancy, France
  • Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark
  • Computer Science and Engineering, University of California (UC) San Diego, La Jolla, California, USA
  • School of Dentistry, UC Los Angeles, Los Angeles, California, USA
  • Institute of Microbiology, ETH Zurich, Zurich, Switzerland
  • Department of Medicinal Chemistry and Pharmacognosy, University of Illinois Chicago, Chicago, Illinois, USA
  • Department of Marine Biotechnology and Resources, National Sun Yat-sen University, Kaohsiung, Taiwan
  • Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
  • Institute of Food Chemistry, University of Münster, Münster, Germany
  • School of Chemical & Physical Sciences, and Centre for Biodiscovery, Victoria University of Wellington, Wellington, New Zealand
  • Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina Chapel Hill, Chapel Hill, North Carolina, USA
  • Department of Chemistry, Indiana University, Bloomington, Indiana, USA
  • Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, California, USA
  • Centro de Ciencias Biologicas e da Saude, Universidade Federal de Mato Grosso do Sul, Campo Grande, Brazil
  • School of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo, São Paulo, Brazil
  • UMR CNRS 6553 ECOBIO, University of Rennes 1, Rennes Cedex, France
  • Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, USA
  • PBSci-Chemistry & Biochemistry Department, UC Santa Cruz, Santa Cruz, California, USA
  • Department of Bioengineering, UC San Diego, La Jolla, California, USA
  • Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, Oregon, USA
  • Department of Plant and Microbial Biology, UC Berkeley, Berkeley, California, USA
  • Department of Biological Sciences, Florida International University, Miami, Florida, USA
  • Department of Pharmaceutical Biotechnology, Helmholtz Institute for Pharmaceutical Research Saarland, Saarbrücken, Germany
  • Center for Oceans and Human Health, Scripps Institute of Oceanography, UC San Diego, La Jolla, California, USA
  • Department of Chemistry, University of Hawaii at Manoa, Honolulu, Hawaii, USA
  • Division of Biological Sciences, UC San Diego, La Jolla, California, USA
  • Department of Nanoengineering, UC San Diego, La Jolla, California, USA
  • School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland
  • Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany
  • Institut de Chimie des Substances Naturelles, CNRS-ICSN, UPR 2301, Labex CEBA, University of Paris-Saclay, Gif-sur-Yvette, France
  • Biological Sciences, Pacific Northwest National Laboratory, Richland, Washington, USA
  • National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA
  • Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
  • Department of Pediatrics, UC San Diego, La Jolla, California, USA
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nbt.3597

    DOI

    http://dx.doi.org/10.1038/nbt.3597

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1045197127

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/27504778


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