The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-12

AUTHORS

Xinxia Peng, Jessica Alföldi, Kevin Gori, Amie J Eisfeld, Scott R Tyler, Jennifer Tisoncik-Go, David Brawand, G Lynn Law, Nives Skunca, Masato Hatta, David J Gasper, Sara M Kelly, Jean Chang, Matthew J Thomas, Jeremy Johnson, Aaron M Berlin, Marcia Lara, Pamela Russell, Ross Swofford, Jason Turner-Maier, Sarah Young, Thibaut Hourlier, Bronwen Aken, Steve Searle, Xingshen Sun, Yaling Yi, M Suresh, Terrence M Tumpey, Adam Siepel, Samantha M Wisely, Christophe Dessimoz, Yoshihiro Kawaoka, Bruce W Birren, Kerstin Lindblad-Toh, Federica Di Palma, John F Engelhardt, Robert E Palermo, Michael G Katze

ABSTRACT

The domestic ferret (Mustela putorius furo) is an important animal model for multiple human respiratory diseases. It is considered the 'gold standard' for modeling human influenza virus infection and transmission. Here we describe the 2.41 Gb draft genome assembly of the domestic ferret, constituting 2.28 Gb of sequence plus gaps. We annotated 19,910 protein-coding genes on this assembly using RNA-seq data from 21 ferret tissues. We characterized the ferret host response to two influenza virus infections by RNA-seq analysis of 42 ferret samples from influenza time-course data and showed distinct signatures in ferret trachea and lung tissues specific to 1918 or 2009 human pandemic influenza virus infections. Using microarray data from 16 ferret samples reflecting cystic fibrosis disease progression, we showed that transcriptional changes in the CFTR-knockout ferret lung reflect pathways of early disease that cannot be readily studied in human infants with cystic fibrosis disease. More... »

PAGES

1250-1255

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nbt.3079

DOI

http://dx.doi.org/10.1038/nbt.3079

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1007480512

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/25402615


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