De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-10

AUTHORS

Ying-hui Li, Guangyu Zhou, Jianxin Ma, Wenkai Jiang, Long-guo Jin, Zhouhao Zhang, Yong Guo, Jinbo Zhang, Yi Sui, Liangtao Zheng, Shan-shan Zhang, Qiyang Zuo, Xue-hui Shi, Yan-fei Li, Wan-ke Zhang, Yiyao Hu, Guanyi Kong, Hui-long Hong, Bing Tan, Jian Song, Zhang-xiong Liu, Yaoshen Wang, Hang Ruan, Carol K L Yeung, Jian Liu, Hailong Wang, Li-juan Zhang, Rong-xia Guan, Ke-jing Wang, Wen-bin Li, Shou-yi Chen, Ru-zhen Chang, Zhi Jiang, Scott A Jackson, Ruiqiang Li, Li-juan Qiu

ABSTRACT

Wild relatives of crops are an important source of genetic diversity for agriculture, but their gene repertoire remains largely unexplored. We report the establishment and analysis of a pan-genome of Glycine soja, the wild relative of cultivated soybean Glycine max, by sequencing and de novo assembly of seven phylogenetically and geographically representative accessions. Intergenomic comparisons identified lineage-specific genes and genes with copy number variation or large-effect mutations, some of which show evidence of positive selection and may contribute to variation of agronomic traits such as biotic resistance, seed composition, flowering and maturity time, organ size and final biomass. Approximately 80% of the pan-genome was present in all seven accessions (core), whereas the rest was dispensable and exhibited greater variation than the core genome, perhaps reflecting a role in adaptation to diverse environments. This work will facilitate the harnessing of untapped genetic diversity from wild soybean for enhancement of elite cultivars. More... »

PAGES

1045-1052

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nbt.2979

    DOI

    http://dx.doi.org/10.1038/nbt.2979

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1000204777

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/25218520


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