Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-07

AUTHORS

G Albert Wu, Simon Prochnik, Jerry Jenkins, Jerome Salse, Uffe Hellsten, Florent Murat, Xavier Perrier, Manuel Ruiz, Simone Scalabrin, Javier Terol, Marco Aurélio Takita, Karine Labadie, Julie Poulain, Arnaud Couloux, Kamel Jabbari, Federica Cattonaro, Cristian Del Fabbro, Sara Pinosio, Andrea Zuccolo, Jarrod Chapman, Jane Grimwood, Francisco R Tadeo, Leandro H Estornell, Juan V Muñoz-Sanz, Victoria Ibanez, Amparo Herrero-Ortega, Pablo Aleza, Julián Pérez-Pérez, Daniel Ramón, Dominique Brunel, François Luro, Chunxian Chen, William G Farmerie, Brian Desany, Chinnappa Kodira, Mohammed Mohiuddin, Tim Harkins, Karin Fredrikson, Paul Burns, Alexandre Lomsadze, Mark Borodovsky, Giuseppe Reforgiato, Juliana Freitas-Astúa, Francis Quetier, Luis Navarro, Mikeal Roose, Patrick Wincker, Jeremy Schmutz, Michele Morgante, Marcos Antonio Machado, Manuel Talon, Olivier Jaillon, Patrick Ollitrault, Frederick Gmitter, Daniel Rokhsar

ABSTRACT

Cultivated citrus are selections from, or hybrids of, wild progenitor species whose identities and contributions to citrus domestication remain controversial. Here we sequence and compare citrus genomes--a high-quality reference haploid clementine genome and mandarin, pummelo, sweet-orange and sour-orange genomes--and show that cultivated types derive from two progenitor species. Although cultivated pummelos represent selections from one progenitor species, Citrus maxima, cultivated mandarins are introgressions of C. maxima into the ancestral mandarin species Citrus reticulata. The most widely cultivated citrus, sweet orange, is the offspring of previously admixed individuals, but sour orange is an F1 hybrid of pure C. maxima and C. reticulata parents, thus implying that wild mandarins were part of the early breeding germplasm. A Chinese wild 'mandarin' diverges substantially from C. reticulata, thus suggesting the possibility of other unrecognized wild citrus species. Understanding citrus phylogeny through genome analysis clarifies taxonomic relationships and facilitates sequence-directed genetic improvement. More... »

PAGES

656-662

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nbt.2906

DOI

http://dx.doi.org/10.1038/nbt.2906

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1029565933

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/24908277


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628 schema:name 454 Life Sciences, Roche, Branford, Connecticut, USA.
629 Present addresses: Life Technologies, Grand Island, New York, USA (T.H.) and US Department of Agriculture, Agricultural Research Service, Southeastern Fruit and Tree Nut Research Laboratory, Byron, Georgia, USA (C.C.).
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641 Département de Biologie, Université d'Evry, Evry, France.
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644 schema:name US Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
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647 schema:name Centro de Citricultura Sylvio Moreira, Instituto Agronômico (IAC), Cordeirópolis, Brazil.
648 Embrapa Cassava and Fruits, Cruz das Almas, Brazil.
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654 schema:name Division of Genetics, Genomics and Development, University of California, Berkeley, Berkeley, California, USA.
655 US Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
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658 schema:name Department of Agriculture and Environmental Sciences, University of Udine, Udine, Italy.
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661 https://www.grid.ac/institutes/grid.8183.2 schema:alternateName Centre de Coopération Internationale en Recherche Agronomique pour le Développement
662 schema:name Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), Montpellier, France.
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665 schema:name Commissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
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