Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2013-08-25

AUTHORS

Morgan G I Langille, Jesse Zaneveld, J Gregory Caporaso, Daniel McDonald, Dan Knights, Joshua A Reyes, Jose C Clemente, Deron E Burkepile, Rebecca L Vega Thurber, Rob Knight, Robert G Beiko, Curtis Huttenhower

ABSTRACT

The functional composition of microbial community samples from several environments is predicted based on 16S ribosomal RNA gene sequencing data.

PAGES

814-821

References to SciGraph publications

  • 2010-04-11. QIIME allows analysis of high-throughput community sequencing data in NATURE METHODS
  • 2011-10-30. Ecology drives a global network of gene exchange connecting the human microbiome in NATURE
  • 2012-09-26. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment in GENOME BIOLOGY
  • 2011-12-01. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2012-06-07. Unlocking the potential of metagenomics through replicated experimental design in NATURE BIOTECHNOLOGY
  • 2012-06-14. Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples in GENOME BIOLOGY
  • 2008-09-19. The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes in BMC BIOINFORMATICS
  • 2012-06-13. Structure, function and diversity of the healthy human microbiome in NATURE
  • 2012-11-01. Lateral gene transfer of an ABC transporter complex between major constituents of the human gut microbiome in BMC MICROBIOLOGY
  • 2012-08-02. Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2010-05-05. Direct sequencing of the human microbiome readily reveals community differences in GENOME BIOLOGY
  • 2012-03-13. The human microbiome: at the interface of health and disease in NATURE REVIEWS GENETICS
  • 2012-07-26. Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2012-12-13. Phylogenetic conservatism of functional traits in microorganisms in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2010-02-25. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 1999-01. Genome phylogeny based on gene content in NATURE GENETICS
  • Journal

    TITLE

    Nature Biotechnology

    ISSUE

    9

    VOLUME

    31

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nbt.2676

    DOI

    http://dx.doi.org/10.1038/nbt.2676

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1034019934

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/23975157


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