Integrative genomics viewer View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Journal

TITLE

Nature Biotechnology

ISSUE

1

VOLUME

29

Related Patents

  • Agents Providing Controls And Standards For Immunoprecipitation Assays
  • Hla-G Transcripts And Isoforms And Their Uses
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Bisulfite-Free, Whole Genome Methylation Analysis
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • System And Method For Processing Variant Call Data
  • Cell Penetrating Transposase
  • A Method Of Targeting Patient-Specific Oncogenes In Extrachromosomal Dna To Treat Glioblastoma
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Molecular Signature
  • Biomarkers For Treatment Of Neoplastic Disorders Using Androgen-Targeted Therapies
  • Combination Of A Brd4 Inhibitor And An Antifolate For The Therapy Of Cancer
  • Compositions And Methods For Treating Patients Suffering From Glioma Or Leukemia
  • Biomarkers For Response To Rapamycin Analogs
  • Differential Methylation
  • Androgen Receptor Variant Inhibitors And Methods Of Using
  • Detecting The Brachyspina Mutation
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • In Vitro Method For Prognostic Evaluation Of The Chances Of Success Of Implantation And / Or Transplantation
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Virome Capture Sequencing Platform, Methods Of Designing And Constructing And Methods Of Using
  • Stable Rna Molecules
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Methods For Identifying Androgen Receptor Splice Variants In Subjects Having Castration Resistant Prostate Cancer
  • Methods For Programming Differentiated Cells Into Hematopoietic Stem Cells
  • Plant With Altered Content Of Steroidal Glycoalkaloids
  • Androgen Receptor Down-Regulating Agents And Uses Thereof
  • Isolated Cells Genetically Modified To Express A Disarm System Having An Anti-Phage Activity And Methods Of Producing Same
  • Distributed System Providing Dynamic Indexing And Visualization Of Genomic Data
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • New Gene Mutations For The Diagnosis Of Arthrogryposis Multiplex Congenita And Congenital Peripheral Neuropathies Disease
  • Methods And Systems For Calling Mutations
  • Method For Determining Presence Or Absence Of Risk Of Developing Cancer
  • Cellular Transport System For Transferring A Sulfonic Acid Construct Carrying A Cargo Into The Cytoplasm Of A Cell
  • Methods For Detection Of Donor-Derived Cell-Free Dna
  • Ezh2 Inhibitor-Induced Gene Expression
  • A Novel Isoform Of Anaplastic Lymphoma Kinase And Its Uses
  • Methods And Compositions For Characterizing Bladder Cancer
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Shared Neoantigens
  • T-Cells Modified To Overexpress Phf19
  • Compositions And Methods For Diagnosing, Evaluating And Treating Cancer
  • Methods For Lung Cancer Detection
  • Methods And Compositions For Determining Ploidy
  • Agents Providing Controls And Standards For Immuno-Precipitation Assays
  • Isoform Of Anaplastic Lymphoma Kinase And Its Uses
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Compositions And Methods For Treating Or Preventing Prostate Cancer And For Detecting Androgen Receptor Variants
  • Compositions And Methods For Personalized Neoplasia Vaccines
  • Bambam: Parallel Comparative Analysis Of High-Throughput Sequencing Data
  • Hla-G Transcripts And Isoforms And Their Uses
  • Plant With Altered Content Of Steroidal Alkaloids
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nbt.1754

    DOI

    http://dx.doi.org/10.1038/nbt.1754

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1019307928

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/21221095


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "author": [
          {
            "affiliation": {
              "alternateName": "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA", 
              "id": "http://www.grid.ac/institutes/grid.66859.34", 
              "name": [
                "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Robinson", 
            "givenName": "James T", 
            "id": "sg:person.01277446770.81", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01277446770.81"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA", 
              "id": "http://www.grid.ac/institutes/grid.66859.34", 
              "name": [
                "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Thorvaldsd\u00f3ttir", 
            "givenName": "Helga", 
            "id": "sg:person.01163220370.60", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01163220370.60"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA", 
              "id": "http://www.grid.ac/institutes/grid.66859.34", 
              "name": [
                "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Winckler", 
            "givenName": "Wendy", 
            "id": "sg:person.01346637410.20", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01346637410.20"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA", 
              "id": "http://www.grid.ac/institutes/grid.116068.8", 
              "name": [
                "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA", 
                "Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Guttman", 
            "givenName": "Mitchell", 
            "id": "sg:person.013620551417.54", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013620551417.54"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA", 
              "id": "http://www.grid.ac/institutes/grid.38142.3c", 
              "name": [
                "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA", 
                "Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA", 
                "Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Lander", 
            "givenName": "Eric S", 
            "id": "sg:person.01260666165.62", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01260666165.62"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA", 
              "id": "http://www.grid.ac/institutes/grid.66859.34", 
              "name": [
                "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Getz", 
            "givenName": "Gad", 
            "id": "sg:person.01316313531.32", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01316313531.32"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA", 
              "id": "http://www.grid.ac/institutes/grid.66859.34", 
              "name": [
                "Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Mesirov", 
            "givenName": "Jill P", 
            "id": "sg:person.0766253043.80", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0766253043.80"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1038/nmeth.1422", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031865155", 
              "https://doi.org/10.1038/nmeth.1422"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature09534", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010608717", 
              "https://doi.org/10.1038/nature09534"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature07385", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039570773", 
              "https://doi.org/10.1038/nature07385"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature07672", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051133532", 
              "https://doi.org/10.1038/nature07672"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2011-01-01", 
        "datePublishedReg": "2011-01-01", 
        "genre": "article", 
        "id": "sg:pub.10.1038/nbt.1754", 
        "inLanguage": "en", 
        "isAccessibleForFree": true, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.2699326", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.2605152", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.2518773", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1115214", 
            "issn": [
              "1087-0156", 
              "1546-1696"
            ], 
            "name": "Nature Biotechnology", 
            "publisher": "Springer Nature", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "29"
          }
        ], 
        "keywords": [
          "Integrative Genomics Viewer", 
          "viewers"
        ], 
        "name": "Integrative genomics viewer", 
        "pagination": "24-26", 
        "productId": [
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1019307928"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1038/nbt.1754"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "21221095"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1038/nbt.1754", 
          "https://app.dimensions.ai/details/publication/pub.1019307928"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2022-05-20T07:26", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/article/article_526.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "https://doi.org/10.1038/nbt.1754"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nbt.1754'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nbt.1754'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nbt.1754'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nbt.1754'


     

    This table displays all metadata directly associated to this object as RDF triples.

    128 TRIPLES      20 PREDICATES      29 URIs      19 LITERALS      7 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1038/nbt.1754 schema:author N139940a00bc94adda60a1d570026a1ce
    2 schema:citation sg:pub.10.1038/nature07385
    3 sg:pub.10.1038/nature07672
    4 sg:pub.10.1038/nature09534
    5 sg:pub.10.1038/nmeth.1422
    6 schema:datePublished 2011-01-01
    7 schema:datePublishedReg 2011-01-01
    8 schema:genre article
    9 schema:inLanguage en
    10 schema:isAccessibleForFree true
    11 schema:isPartOf N409047f7f51643c9a9750d8e036c593c
    12 Nfdd94d941f984d91a707512d10b88ecf
    13 sg:journal.1115214
    14 schema:keywords Integrative Genomics Viewer
    15 viewers
    16 schema:name Integrative genomics viewer
    17 schema:pagination 24-26
    18 schema:productId N681aab88c10b44dbbdf4cba8fe92316c
    19 N777675a4694c4683b4cb9bb415d9a216
    20 Ncbf5606d95fd495eb45830c95c4cb7ef
    21 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019307928
    22 https://doi.org/10.1038/nbt.1754
    23 schema:sdDatePublished 2022-05-20T07:26
    24 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    25 schema:sdPublisher Nf5c20f1aaeb1476f950e76986d934fb9
    26 schema:url https://doi.org/10.1038/nbt.1754
    27 sgo:license sg:explorer/license/
    28 sgo:sdDataset articles
    29 rdf:type schema:ScholarlyArticle
    30 N139940a00bc94adda60a1d570026a1ce rdf:first sg:person.01277446770.81
    31 rdf:rest Nef59ca5ffa254e97989d94c3252a6620
    32 N27f70635ad1c44deabac5dc1d8d237d3 rdf:first sg:person.013620551417.54
    33 rdf:rest Nc7e025184fc24d598a85d99255db45f2
    34 N3e25241cc4304172b4210c64db0999e7 rdf:first sg:person.01346637410.20
    35 rdf:rest N27f70635ad1c44deabac5dc1d8d237d3
    36 N409047f7f51643c9a9750d8e036c593c schema:issueNumber 1
    37 rdf:type schema:PublicationIssue
    38 N681aab88c10b44dbbdf4cba8fe92316c schema:name doi
    39 schema:value 10.1038/nbt.1754
    40 rdf:type schema:PropertyValue
    41 N777675a4694c4683b4cb9bb415d9a216 schema:name dimensions_id
    42 schema:value pub.1019307928
    43 rdf:type schema:PropertyValue
    44 Na89d0508bb9348b3825b21844b8591a6 rdf:first sg:person.0766253043.80
    45 rdf:rest rdf:nil
    46 Nc7e025184fc24d598a85d99255db45f2 rdf:first sg:person.01260666165.62
    47 rdf:rest Nd4f6844262d7405b86365b97b0b91d49
    48 Ncbf5606d95fd495eb45830c95c4cb7ef schema:name pubmed_id
    49 schema:value 21221095
    50 rdf:type schema:PropertyValue
    51 Nd4f6844262d7405b86365b97b0b91d49 rdf:first sg:person.01316313531.32
    52 rdf:rest Na89d0508bb9348b3825b21844b8591a6
    53 Nef59ca5ffa254e97989d94c3252a6620 rdf:first sg:person.01163220370.60
    54 rdf:rest N3e25241cc4304172b4210c64db0999e7
    55 Nf5c20f1aaeb1476f950e76986d934fb9 schema:name Springer Nature - SN SciGraph project
    56 rdf:type schema:Organization
    57 Nfdd94d941f984d91a707512d10b88ecf schema:volumeNumber 29
    58 rdf:type schema:PublicationVolume
    59 sg:grant.2518773 http://pending.schema.org/fundedItem sg:pub.10.1038/nbt.1754
    60 rdf:type schema:MonetaryGrant
    61 sg:grant.2605152 http://pending.schema.org/fundedItem sg:pub.10.1038/nbt.1754
    62 rdf:type schema:MonetaryGrant
    63 sg:grant.2699326 http://pending.schema.org/fundedItem sg:pub.10.1038/nbt.1754
    64 rdf:type schema:MonetaryGrant
    65 sg:journal.1115214 schema:issn 1087-0156
    66 1546-1696
    67 schema:name Nature Biotechnology
    68 schema:publisher Springer Nature
    69 rdf:type schema:Periodical
    70 sg:person.01163220370.60 schema:affiliation grid-institutes:grid.66859.34
    71 schema:familyName Thorvaldsdóttir
    72 schema:givenName Helga
    73 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01163220370.60
    74 rdf:type schema:Person
    75 sg:person.01260666165.62 schema:affiliation grid-institutes:grid.38142.3c
    76 schema:familyName Lander
    77 schema:givenName Eric S
    78 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01260666165.62
    79 rdf:type schema:Person
    80 sg:person.01277446770.81 schema:affiliation grid-institutes:grid.66859.34
    81 schema:familyName Robinson
    82 schema:givenName James T
    83 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01277446770.81
    84 rdf:type schema:Person
    85 sg:person.01316313531.32 schema:affiliation grid-institutes:grid.66859.34
    86 schema:familyName Getz
    87 schema:givenName Gad
    88 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01316313531.32
    89 rdf:type schema:Person
    90 sg:person.01346637410.20 schema:affiliation grid-institutes:grid.66859.34
    91 schema:familyName Winckler
    92 schema:givenName Wendy
    93 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01346637410.20
    94 rdf:type schema:Person
    95 sg:person.013620551417.54 schema:affiliation grid-institutes:grid.116068.8
    96 schema:familyName Guttman
    97 schema:givenName Mitchell
    98 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013620551417.54
    99 rdf:type schema:Person
    100 sg:person.0766253043.80 schema:affiliation grid-institutes:grid.66859.34
    101 schema:familyName Mesirov
    102 schema:givenName Jill P
    103 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0766253043.80
    104 rdf:type schema:Person
    105 sg:pub.10.1038/nature07385 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039570773
    106 https://doi.org/10.1038/nature07385
    107 rdf:type schema:CreativeWork
    108 sg:pub.10.1038/nature07672 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051133532
    109 https://doi.org/10.1038/nature07672
    110 rdf:type schema:CreativeWork
    111 sg:pub.10.1038/nature09534 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010608717
    112 https://doi.org/10.1038/nature09534
    113 rdf:type schema:CreativeWork
    114 sg:pub.10.1038/nmeth.1422 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031865155
    115 https://doi.org/10.1038/nmeth.1422
    116 rdf:type schema:CreativeWork
    117 grid-institutes:grid.116068.8 schema:alternateName Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA
    118 schema:name Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA
    119 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA
    120 rdf:type schema:Organization
    121 grid-institutes:grid.38142.3c schema:alternateName Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA
    122 schema:name Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA
    123 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA
    124 Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA
    125 rdf:type schema:Organization
    126 grid-institutes:grid.66859.34 schema:alternateName Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA
    127 schema:name Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA
    128 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...