SAR11 bacteria linked to ocean anoxia and nitrogen loss View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-08-03

AUTHORS

Despina Tsementzi, Jieying Wu, Samuel Deutsch, Sangeeta Nath, Luis M Rodriguez-R, Andrew S. Burns, Piyush Ranjan, Neha Sarode, Rex R. Malmstrom, Cory C. Padilla, Benjamin K. Stone, Laura A. Bristow, Morten Larsen, Jennifer B. Glass, Bo Thamdrup, Tanja Woyke, Konstantinos T. Konstantinidis, Frank J. Stewart

ABSTRACT

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. These results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group. More... »

PAGES

179-183

References to SciGraph publications

  • 2010-09-27. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data in BMC BIOINFORMATICS
  • 2002-12. SAR11 clade dominates ocean surface bacterioplankton communities in NATURE
  • 2014-09-19. Seasonal dynamics of active SAR11 ecotypes in the oligotrophic Northwest Mediterranean Sea in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2011-06-14. Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade in SCIENTIFIC REPORTS
  • 2013-07-14. Insights into the phylogeny and coding potential of microbial dark matter in NATURE
  • 2004. The Dynamics of the Marine Nitrogen Cycle and its Influence on Atmospheric CO2 Variations in THE OCEAN CARBON CYCLE AND CLIMATE
  • 2014-11-17. Fast and sensitive protein alignment using DIAMOND in NATURE METHODS
  • 2013-03-07. High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2013-08-27. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment in NATURE COMMUNICATIONS
  • 2015-04-07. Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2014-11-28. Evolutionary origin of a streamlined marine bacterioplankton lineage in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2012-07-05. Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2013-04-27. The unique metabolism of SAR11 aquatic bacteria in JOURNAL OF MICROBIOLOGY
  • 2008-12-04. Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2013-09-12. Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2011-03-22. Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities in GENOME BIOLOGY
  • 2013-02-24. Nitrogen cycling driven by organic matter export in the South Pacific oxygen minimum zone in NATURE GEOSCIENCE
  • 2011-12-15. Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2008-06-26. Genomic patterns of recombination, clonal divergence and environment in marine microbial populations in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2014-01-23. Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • Journal

    TITLE

    Nature

    ISSUE

    7615

    VOLUME

    536

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nature19068

    DOI

    http://dx.doi.org/10.1038/nature19068

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1048465291

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/27487207


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biochemistry and Cell Biology", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Microbiology", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Adaptation, Physiological", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Alphaproteobacteria", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Anaerobiosis", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Aquatic Organisms", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Denitrification", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Gene Expression Profiling", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genes, Bacterial", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genome, Bacterial", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Nitrate Reductases", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Nitrates", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Nitrites", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Nitrogen", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Oceans and Seas", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Oxidation-Reduction", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Oxygen", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phylogeny", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Seawater", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Single-Cell Analysis", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Transcription, Genetic", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "School of Civil and Environmental Engineering, Georgia Institute of Technology, Ford Environmental Science & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Civil and Environmental Engineering, Georgia Institute of Technology, Ford Environmental Science & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Tsementzi", 
            "givenName": "Despina", 
            "id": "sg:person.01314143171.99", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01314143171.99"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Wu", 
            "givenName": "Jieying", 
            "id": "sg:person.012437026345.51", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012437026345.51"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598", 
              "id": "http://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Deutsch", 
            "givenName": "Samuel", 
            "id": "sg:person.01265042244.14", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01265042244.14"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598", 
              "id": "http://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Nath", 
            "givenName": "Sangeeta", 
            "id": "sg:person.0750725166.01", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0750725166.01"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Rodriguez-R", 
            "givenName": "Luis M", 
            "id": "sg:person.01251075641.70", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01251075641.70"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Burns", 
            "givenName": "Andrew S.", 
            "id": "sg:person.0651521745.07", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0651521745.07"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Ranjan", 
            "givenName": "Piyush", 
            "id": "sg:person.01231166565.37", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01231166565.37"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Sarode", 
            "givenName": "Neha", 
            "id": "sg:person.01304270572.19", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01304270572.19"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598", 
              "id": "http://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Malmstrom", 
            "givenName": "Rex R.", 
            "id": "sg:person.01046703646.00", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01046703646.00"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Padilla", 
            "givenName": "Cory C.", 
            "id": "sg:person.0647045421.55", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0647045421.55"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Biology, Bowdoin College, 255 Maine St, Brunswick, ME 04011", 
              "id": "http://www.grid.ac/institutes/grid.253245.7", 
              "name": [
                "Department of Biology, Bowdoin College, 255 Maine St, Brunswick, ME 04011"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Stone", 
            "givenName": "Benjamin K.", 
            "id": "sg:person.011707561145.00", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011707561145.00"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Biochemistry Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany", 
              "id": "http://www.grid.ac/institutes/grid.419529.2", 
              "name": [
                "Biochemistry Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bristow", 
            "givenName": "Laura A.", 
            "id": "sg:person.0751537347.54", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0751537347.54"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Biology and Nordic Center for Earth Evolution (NordCEE), University of Southern Denmark, Odense, Denmark", 
              "id": "http://www.grid.ac/institutes/grid.10825.3e", 
              "name": [
                "Department of Biology and Nordic Center for Earth Evolution (NordCEE), University of Southern Denmark, Odense, Denmark"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Larsen", 
            "givenName": "Morten", 
            "id": "sg:person.0735266570.31", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0735266570.31"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Glass", 
            "givenName": "Jennifer B.", 
            "id": "sg:person.01046624765.28", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01046624765.28"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Biology and Nordic Center for Earth Evolution (NordCEE), University of Southern Denmark, Odense, Denmark", 
              "id": "http://www.grid.ac/institutes/grid.10825.3e", 
              "name": [
                "Department of Biology and Nordic Center for Earth Evolution (NordCEE), University of Southern Denmark, Odense, Denmark"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Thamdrup", 
            "givenName": "Bo", 
            "id": "sg:person.0702146201.01", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0702146201.01"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598", 
              "id": "http://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Woyke", 
            "givenName": "Tanja", 
            "id": "sg:person.01366555074.19", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01366555074.19"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Civil and Environmental Engineering, Georgia Institute of Technology, Ford Environmental Science & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
                "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Konstantinidis", 
            "givenName": "Konstantinos T.", 
            "id": "sg:person.0665165336.02", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0665165336.02"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332", 
              "id": "http://www.grid.ac/institutes/grid.213917.f", 
              "name": [
                "School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Stewart", 
            "givenName": "Frank J.", 
            "id": "sg:person.01342110413.80", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01342110413.80"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1038/ismej.2013.144", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036869843", 
              "https://doi.org/10.1038/ismej.2013.144"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ncomms3120", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002664779", 
              "https://doi.org/10.1038/ncomms3120"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2014.227", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000756789", 
              "https://doi.org/10.1038/ismej.2014.227"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s12275-013-2671-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000339728", 
              "https://doi.org/10.1007/s12275-013-2671-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ngeo1739", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018356622", 
              "https://doi.org/10.1038/ngeo1739"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-11-485", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030070956", 
              "https://doi.org/10.1186/1471-2105-11-485"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2011.189", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011324081", 
              "https://doi.org/10.1038/ismej.2011.189"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2011-12-3-r26", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028666137", 
              "https://doi.org/10.1186/gb-2011-12-3-r26"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2013.32", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027527632", 
              "https://doi.org/10.1038/ismej.2013.32"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature01240", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002567996", 
              "https://doi.org/10.1038/nature01240"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2015.44", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048770248", 
              "https://doi.org/10.1038/ismej.2015.44"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-1-4020-2087-2_4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047268456", 
              "https://doi.org/10.1007/978-1-4020-2087-2_4"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2014.129", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033062711", 
              "https://doi.org/10.1038/ismej.2014.129"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2013.243", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015343058", 
              "https://doi.org/10.1038/ismej.2013.243"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2008.62", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035386450", 
              "https://doi.org/10.1038/ismej.2008.62"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2008.117", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005822312", 
              "https://doi.org/10.1038/ismej.2008.117"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature12352", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019299949", 
              "https://doi.org/10.1038/nature12352"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/srep00013", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042646065", 
              "https://doi.org/10.1038/srep00013"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nmeth.3176", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023901695", 
              "https://doi.org/10.1038/nmeth.3176"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ismej.2012.70", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031496340", 
              "https://doi.org/10.1038/ismej.2012.70"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2016-08-03", 
        "datePublishedReg": "2016-08-03", 
        "description": "Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. These results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group.", 
        "genre": "article", 
        "id": "sg:pub.10.1038/nature19068", 
        "inLanguage": "en", 
        "isAccessibleForFree": true, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.3948716", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.3582343", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.3001513", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.3789926", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1018957", 
            "issn": [
              "0028-0836", 
              "1476-4687"
            ], 
            "name": "Nature", 
            "publisher": "Springer Nature", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "7615", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "536"
          }
        ], 
        "keywords": [
          "SAR11 bacteria", 
          "oxygen minimum zone", 
          "largest oxygen minimum zones", 
          "respiratory nitrate reductase", 
          "nar genes", 
          "organismal groups", 
          "SAR11 lineages", 
          "ecological niches", 
          "genomic analysis", 
          "microbial cells", 
          "nitrate reductase", 
          "bioavailable nitrogen", 
          "biogeochemical cycling", 
          "anaerobic microbes", 
          "SAR11", 
          "single cells", 
          "bacteria", 
          "genes", 
          "anaerobic metabolism", 
          "minimum zone", 
          "nitrogen loss", 
          "nitrate reduction activity", 
          "anoxic zone", 
          "cells", 
          "lineages", 
          "transcription", 
          "microbes", 
          "niche", 
          "transcripts", 
          "protein", 
          "vital role", 
          "reductase", 
          "surface ocean", 
          "pathway", 
          "reduction activity", 
          "metabolism", 
          "adaptation", 
          "first step", 
          "anoxia", 
          "cycling", 
          "loss", 
          "role", 
          "nitrogen", 
          "activity", 
          "denitrification", 
          "Ocean", 
          "zone", 
          "constitute", 
          "oxygen", 
          "step", 
          "analysis", 
          "half", 
          "Earth", 
          "results", 
          "group", 
          "detection", 
          "life", 
          "N2 gas", 
          "gas", 
          "SAR11 clade constitute", 
          "clade constitute", 
          "oxygen-rich surface ocean", 
          "OMZ biogeochemical cycling", 
          "world's largest OMZ", 
          "uncharacterized SAR11 lineages", 
          "SAR11 nar genes", 
          "nitrite-producing first step", 
          "OMZ nar transcripts", 
          "nar transcripts", 
          "maximum nitrate reduction activity", 
          "ocean nitrogen loss", 
          "abundant organismal group"
        ], 
        "name": "SAR11 bacteria linked to ocean anoxia and nitrogen loss", 
        "pagination": "179-183", 
        "productId": [
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1048465291"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1038/nature19068"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "27487207"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1038/nature19068", 
          "https://app.dimensions.ai/details/publication/pub.1048465291"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2022-01-01T18:39", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-springernature-scigraph/baseset/20220101/entities/gbq_results/article/article_694.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "https://doi.org/10.1038/nature19068"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nature19068'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nature19068'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nature19068'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nature19068'


     

    This table displays all metadata directly associated to this object as RDF triples.

    441 TRIPLES      22 PREDICATES      139 URIs      109 LITERALS      26 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1038/nature19068 schema:about N03f016db77e9431bb1dac68d809634ab
    2 N0aef6aa57c98490abed6750269d2e2b7
    3 N109bc2a95d8f4267be3d0a735af7f571
    4 N27a9bdc83c8b4169995385af72f20c5d
    5 N2a79f5c49855482686d5965e1ef4867e
    6 N33f5401e20d8446bb1d8537616ede4b4
    7 N43894c4e79ff438e95a08458bd42d324
    8 N478021aa02e246249b88b753f16d5b34
    9 N49716feb54ae4b3daa313bf3def575d1
    10 N503552b151334ecfa688883393287a7e
    11 N68aa50168bc34f81b82f231ec61f3174
    12 N94039c0239aa4b56ac58c67a665846b8
    13 Na8553409caf74212ae8f2d51a74da698
    14 Nb6b7d024ce1f4bf7b78279bd4d381f16
    15 Ncbcf7b5cda6545b4b5c77c8302cd8e4c
    16 Ncf5f882690dc4763b5569b07b3dee343
    17 Nea2fe9f6996d480e9098b47144af600d
    18 Ned4def42f799421ea7debe78f53e538a
    19 Nff8adbf135dd4c3792e754dfc205041e
    20 anzsrc-for:06
    21 anzsrc-for:0601
    22 anzsrc-for:0604
    23 anzsrc-for:0605
    24 schema:author N7436d068a32e41faa5dc96d58df26880
    25 schema:citation sg:pub.10.1007/978-1-4020-2087-2_4
    26 sg:pub.10.1007/s12275-013-2671-2
    27 sg:pub.10.1038/ismej.2008.117
    28 sg:pub.10.1038/ismej.2008.62
    29 sg:pub.10.1038/ismej.2011.189
    30 sg:pub.10.1038/ismej.2012.70
    31 sg:pub.10.1038/ismej.2013.144
    32 sg:pub.10.1038/ismej.2013.243
    33 sg:pub.10.1038/ismej.2013.32
    34 sg:pub.10.1038/ismej.2014.129
    35 sg:pub.10.1038/ismej.2014.227
    36 sg:pub.10.1038/ismej.2015.44
    37 sg:pub.10.1038/nature01240
    38 sg:pub.10.1038/nature12352
    39 sg:pub.10.1038/ncomms3120
    40 sg:pub.10.1038/ngeo1739
    41 sg:pub.10.1038/nmeth.3176
    42 sg:pub.10.1038/srep00013
    43 sg:pub.10.1186/1471-2105-11-485
    44 sg:pub.10.1186/gb-2011-12-3-r26
    45 schema:datePublished 2016-08-03
    46 schema:datePublishedReg 2016-08-03
    47 schema:description Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. These results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group.
    48 schema:genre article
    49 schema:inLanguage en
    50 schema:isAccessibleForFree true
    51 schema:isPartOf N7471fdd6ac2e47ce8bfb569df7c00e08
    52 N8fe7114328c64f0ba8ad5377bdde7938
    53 sg:journal.1018957
    54 schema:keywords Earth
    55 N2 gas
    56 OMZ biogeochemical cycling
    57 OMZ nar transcripts
    58 Ocean
    59 SAR11
    60 SAR11 bacteria
    61 SAR11 clade constitute
    62 SAR11 lineages
    63 SAR11 nar genes
    64 abundant organismal group
    65 activity
    66 adaptation
    67 anaerobic metabolism
    68 anaerobic microbes
    69 analysis
    70 anoxia
    71 anoxic zone
    72 bacteria
    73 bioavailable nitrogen
    74 biogeochemical cycling
    75 cells
    76 clade constitute
    77 constitute
    78 cycling
    79 denitrification
    80 detection
    81 ecological niches
    82 first step
    83 gas
    84 genes
    85 genomic analysis
    86 group
    87 half
    88 largest oxygen minimum zones
    89 life
    90 lineages
    91 loss
    92 maximum nitrate reduction activity
    93 metabolism
    94 microbes
    95 microbial cells
    96 minimum zone
    97 nar genes
    98 nar transcripts
    99 niche
    100 nitrate reductase
    101 nitrate reduction activity
    102 nitrite-producing first step
    103 nitrogen
    104 nitrogen loss
    105 ocean nitrogen loss
    106 organismal groups
    107 oxygen
    108 oxygen minimum zone
    109 oxygen-rich surface ocean
    110 pathway
    111 protein
    112 reductase
    113 reduction activity
    114 respiratory nitrate reductase
    115 results
    116 role
    117 single cells
    118 step
    119 surface ocean
    120 transcription
    121 transcripts
    122 uncharacterized SAR11 lineages
    123 vital role
    124 world's largest OMZ
    125 zone
    126 schema:name SAR11 bacteria linked to ocean anoxia and nitrogen loss
    127 schema:pagination 179-183
    128 schema:productId N76ebe7bbc40645079300f5199b5682a8
    129 Nb2553295889946cc9ec5202e0946ed8f
    130 Ndfcb5904c362456e8054dc2554480b78
    131 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048465291
    132 https://doi.org/10.1038/nature19068
    133 schema:sdDatePublished 2022-01-01T18:39
    134 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    135 schema:sdPublisher N55b2c9e7b9ec4b0d9d1172cf5c85e157
    136 schema:url https://doi.org/10.1038/nature19068
    137 sgo:license sg:explorer/license/
    138 sgo:sdDataset articles
    139 rdf:type schema:ScholarlyArticle
    140 N03f016db77e9431bb1dac68d809634ab schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    141 schema:name Phylogeny
    142 rdf:type schema:DefinedTerm
    143 N0799ebb9ef294e6884921b3475a39ae6 rdf:first sg:person.012437026345.51
    144 rdf:rest N27d6d39227ea4d1a83bb792fb3fcb4c1
    145 N0ab99066617b4686ad0a25b9ac0c375c rdf:first sg:person.0751537347.54
    146 rdf:rest Nce0159d04c384979a654f54aab9db0c7
    147 N0aef6aa57c98490abed6750269d2e2b7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    148 schema:name Single-Cell Analysis
    149 rdf:type schema:DefinedTerm
    150 N109bc2a95d8f4267be3d0a735af7f571 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    151 schema:name Genome, Bacterial
    152 rdf:type schema:DefinedTerm
    153 N1b681ee5ef3f440395456dba16d629e6 rdf:first sg:person.0750725166.01
    154 rdf:rest Nf0dca6be4ee9460fa74df8489bf502c7
    155 N27a9bdc83c8b4169995385af72f20c5d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    156 schema:name Seawater
    157 rdf:type schema:DefinedTerm
    158 N27d6d39227ea4d1a83bb792fb3fcb4c1 rdf:first sg:person.01265042244.14
    159 rdf:rest N1b681ee5ef3f440395456dba16d629e6
    160 N2a79f5c49855482686d5965e1ef4867e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    161 schema:name Transcription, Genetic
    162 rdf:type schema:DefinedTerm
    163 N2da001cf31c244f6aee929872aa34668 rdf:first sg:person.01046624765.28
    164 rdf:rest N4250e86a520b459fb8b3a9e170136d84
    165 N33f5401e20d8446bb1d8537616ede4b4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    166 schema:name Oxidation-Reduction
    167 rdf:type schema:DefinedTerm
    168 N382602d8ee4f4773b1941aca89ad5cb4 rdf:first sg:person.0647045421.55
    169 rdf:rest N7a75ca499b5c4067a974eb09d7cc89c9
    170 N4250e86a520b459fb8b3a9e170136d84 rdf:first sg:person.0702146201.01
    171 rdf:rest Nfc61b6a50b504ef890c9139d49dec5c6
    172 N43894c4e79ff438e95a08458bd42d324 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    173 schema:name Adaptation, Physiological
    174 rdf:type schema:DefinedTerm
    175 N478021aa02e246249b88b753f16d5b34 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    176 schema:name Denitrification
    177 rdf:type schema:DefinedTerm
    178 N49716feb54ae4b3daa313bf3def575d1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    179 schema:name Gene Expression Profiling
    180 rdf:type schema:DefinedTerm
    181 N503552b151334ecfa688883393287a7e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    182 schema:name Genes, Bacterial
    183 rdf:type schema:DefinedTerm
    184 N55b2c9e7b9ec4b0d9d1172cf5c85e157 schema:name Springer Nature - SN SciGraph project
    185 rdf:type schema:Organization
    186 N582dddc4b8704745acb749fe58df2a0c rdf:first sg:person.01046703646.00
    187 rdf:rest N382602d8ee4f4773b1941aca89ad5cb4
    188 N68aa50168bc34f81b82f231ec61f3174 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    189 schema:name Anaerobiosis
    190 rdf:type schema:DefinedTerm
    191 N6b27e4d3f1e94ce68a43406ed5e7fb27 rdf:first sg:person.01304270572.19
    192 rdf:rest N582dddc4b8704745acb749fe58df2a0c
    193 N7436d068a32e41faa5dc96d58df26880 rdf:first sg:person.01314143171.99
    194 rdf:rest N0799ebb9ef294e6884921b3475a39ae6
    195 N7471fdd6ac2e47ce8bfb569df7c00e08 schema:volumeNumber 536
    196 rdf:type schema:PublicationVolume
    197 N76ebe7bbc40645079300f5199b5682a8 schema:name doi
    198 schema:value 10.1038/nature19068
    199 rdf:type schema:PropertyValue
    200 N7a75ca499b5c4067a974eb09d7cc89c9 rdf:first sg:person.011707561145.00
    201 rdf:rest N0ab99066617b4686ad0a25b9ac0c375c
    202 N7b1b304c85be4e63959ddbc3a8e0821d rdf:first sg:person.01342110413.80
    203 rdf:rest rdf:nil
    204 N8fe7114328c64f0ba8ad5377bdde7938 schema:issueNumber 7615
    205 rdf:type schema:PublicationIssue
    206 N94039c0239aa4b56ac58c67a665846b8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    207 schema:name Oxygen
    208 rdf:type schema:DefinedTerm
    209 Na8553409caf74212ae8f2d51a74da698 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    210 schema:name Nitrates
    211 rdf:type schema:DefinedTerm
    212 Nb2553295889946cc9ec5202e0946ed8f schema:name dimensions_id
    213 schema:value pub.1048465291
    214 rdf:type schema:PropertyValue
    215 Nb6ab2979013b47b9a397aa52b2c1493f rdf:first sg:person.0651521745.07
    216 rdf:rest Nbd04bbb58be24845b2fdc41fd4ceb1b5
    217 Nb6b7d024ce1f4bf7b78279bd4d381f16 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    218 schema:name Alphaproteobacteria
    219 rdf:type schema:DefinedTerm
    220 Nbd04bbb58be24845b2fdc41fd4ceb1b5 rdf:first sg:person.01231166565.37
    221 rdf:rest N6b27e4d3f1e94ce68a43406ed5e7fb27
    222 Ncbcf7b5cda6545b4b5c77c8302cd8e4c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    223 schema:name Oceans and Seas
    224 rdf:type schema:DefinedTerm
    225 Nce0159d04c384979a654f54aab9db0c7 rdf:first sg:person.0735266570.31
    226 rdf:rest N2da001cf31c244f6aee929872aa34668
    227 Ncf5f882690dc4763b5569b07b3dee343 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    228 schema:name Aquatic Organisms
    229 rdf:type schema:DefinedTerm
    230 Nd2e789eb6a2847f8865d6b1feb672cce rdf:first sg:person.0665165336.02
    231 rdf:rest N7b1b304c85be4e63959ddbc3a8e0821d
    232 Ndfcb5904c362456e8054dc2554480b78 schema:name pubmed_id
    233 schema:value 27487207
    234 rdf:type schema:PropertyValue
    235 Nea2fe9f6996d480e9098b47144af600d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    236 schema:name Nitrate Reductases
    237 rdf:type schema:DefinedTerm
    238 Ned4def42f799421ea7debe78f53e538a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    239 schema:name Nitrogen
    240 rdf:type schema:DefinedTerm
    241 Nf0dca6be4ee9460fa74df8489bf502c7 rdf:first sg:person.01251075641.70
    242 rdf:rest Nb6ab2979013b47b9a397aa52b2c1493f
    243 Nfc61b6a50b504ef890c9139d49dec5c6 rdf:first sg:person.01366555074.19
    244 rdf:rest Nd2e789eb6a2847f8865d6b1feb672cce
    245 Nff8adbf135dd4c3792e754dfc205041e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    246 schema:name Nitrites
    247 rdf:type schema:DefinedTerm
    248 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    249 schema:name Biological Sciences
    250 rdf:type schema:DefinedTerm
    251 anzsrc-for:0601 schema:inDefinedTermSet anzsrc-for:
    252 schema:name Biochemistry and Cell Biology
    253 rdf:type schema:DefinedTerm
    254 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    255 schema:name Genetics
    256 rdf:type schema:DefinedTerm
    257 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
    258 schema:name Microbiology
    259 rdf:type schema:DefinedTerm
    260 sg:grant.3001513 http://pending.schema.org/fundedItem sg:pub.10.1038/nature19068
    261 rdf:type schema:MonetaryGrant
    262 sg:grant.3582343 http://pending.schema.org/fundedItem sg:pub.10.1038/nature19068
    263 rdf:type schema:MonetaryGrant
    264 sg:grant.3789926 http://pending.schema.org/fundedItem sg:pub.10.1038/nature19068
    265 rdf:type schema:MonetaryGrant
    266 sg:grant.3948716 http://pending.schema.org/fundedItem sg:pub.10.1038/nature19068
    267 rdf:type schema:MonetaryGrant
    268 sg:journal.1018957 schema:issn 0028-0836
    269 1476-4687
    270 schema:name Nature
    271 schema:publisher Springer Nature
    272 rdf:type schema:Periodical
    273 sg:person.01046624765.28 schema:affiliation grid-institutes:grid.213917.f
    274 schema:familyName Glass
    275 schema:givenName Jennifer B.
    276 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01046624765.28
    277 rdf:type schema:Person
    278 sg:person.01046703646.00 schema:affiliation grid-institutes:grid.451309.a
    279 schema:familyName Malmstrom
    280 schema:givenName Rex R.
    281 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01046703646.00
    282 rdf:type schema:Person
    283 sg:person.011707561145.00 schema:affiliation grid-institutes:grid.253245.7
    284 schema:familyName Stone
    285 schema:givenName Benjamin K.
    286 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011707561145.00
    287 rdf:type schema:Person
    288 sg:person.01231166565.37 schema:affiliation grid-institutes:grid.213917.f
    289 schema:familyName Ranjan
    290 schema:givenName Piyush
    291 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01231166565.37
    292 rdf:type schema:Person
    293 sg:person.012437026345.51 schema:affiliation grid-institutes:grid.213917.f
    294 schema:familyName Wu
    295 schema:givenName Jieying
    296 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012437026345.51
    297 rdf:type schema:Person
    298 sg:person.01251075641.70 schema:affiliation grid-institutes:grid.213917.f
    299 schema:familyName Rodriguez-R
    300 schema:givenName Luis M
    301 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01251075641.70
    302 rdf:type schema:Person
    303 sg:person.01265042244.14 schema:affiliation grid-institutes:grid.451309.a
    304 schema:familyName Deutsch
    305 schema:givenName Samuel
    306 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01265042244.14
    307 rdf:type schema:Person
    308 sg:person.01304270572.19 schema:affiliation grid-institutes:grid.213917.f
    309 schema:familyName Sarode
    310 schema:givenName Neha
    311 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01304270572.19
    312 rdf:type schema:Person
    313 sg:person.01314143171.99 schema:affiliation grid-institutes:grid.213917.f
    314 schema:familyName Tsementzi
    315 schema:givenName Despina
    316 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01314143171.99
    317 rdf:type schema:Person
    318 sg:person.01342110413.80 schema:affiliation grid-institutes:grid.213917.f
    319 schema:familyName Stewart
    320 schema:givenName Frank J.
    321 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01342110413.80
    322 rdf:type schema:Person
    323 sg:person.01366555074.19 schema:affiliation grid-institutes:grid.451309.a
    324 schema:familyName Woyke
    325 schema:givenName Tanja
    326 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01366555074.19
    327 rdf:type schema:Person
    328 sg:person.0647045421.55 schema:affiliation grid-institutes:grid.213917.f
    329 schema:familyName Padilla
    330 schema:givenName Cory C.
    331 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0647045421.55
    332 rdf:type schema:Person
    333 sg:person.0651521745.07 schema:affiliation grid-institutes:grid.213917.f
    334 schema:familyName Burns
    335 schema:givenName Andrew S.
    336 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0651521745.07
    337 rdf:type schema:Person
    338 sg:person.0665165336.02 schema:affiliation grid-institutes:grid.213917.f
    339 schema:familyName Konstantinidis
    340 schema:givenName Konstantinos T.
    341 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0665165336.02
    342 rdf:type schema:Person
    343 sg:person.0702146201.01 schema:affiliation grid-institutes:grid.10825.3e
    344 schema:familyName Thamdrup
    345 schema:givenName Bo
    346 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0702146201.01
    347 rdf:type schema:Person
    348 sg:person.0735266570.31 schema:affiliation grid-institutes:grid.10825.3e
    349 schema:familyName Larsen
    350 schema:givenName Morten
    351 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0735266570.31
    352 rdf:type schema:Person
    353 sg:person.0750725166.01 schema:affiliation grid-institutes:grid.451309.a
    354 schema:familyName Nath
    355 schema:givenName Sangeeta
    356 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0750725166.01
    357 rdf:type schema:Person
    358 sg:person.0751537347.54 schema:affiliation grid-institutes:grid.419529.2
    359 schema:familyName Bristow
    360 schema:givenName Laura A.
    361 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0751537347.54
    362 rdf:type schema:Person
    363 sg:pub.10.1007/978-1-4020-2087-2_4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047268456
    364 https://doi.org/10.1007/978-1-4020-2087-2_4
    365 rdf:type schema:CreativeWork
    366 sg:pub.10.1007/s12275-013-2671-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000339728
    367 https://doi.org/10.1007/s12275-013-2671-2
    368 rdf:type schema:CreativeWork
    369 sg:pub.10.1038/ismej.2008.117 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005822312
    370 https://doi.org/10.1038/ismej.2008.117
    371 rdf:type schema:CreativeWork
    372 sg:pub.10.1038/ismej.2008.62 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035386450
    373 https://doi.org/10.1038/ismej.2008.62
    374 rdf:type schema:CreativeWork
    375 sg:pub.10.1038/ismej.2011.189 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011324081
    376 https://doi.org/10.1038/ismej.2011.189
    377 rdf:type schema:CreativeWork
    378 sg:pub.10.1038/ismej.2012.70 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031496340
    379 https://doi.org/10.1038/ismej.2012.70
    380 rdf:type schema:CreativeWork
    381 sg:pub.10.1038/ismej.2013.144 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036869843
    382 https://doi.org/10.1038/ismej.2013.144
    383 rdf:type schema:CreativeWork
    384 sg:pub.10.1038/ismej.2013.243 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015343058
    385 https://doi.org/10.1038/ismej.2013.243
    386 rdf:type schema:CreativeWork
    387 sg:pub.10.1038/ismej.2013.32 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027527632
    388 https://doi.org/10.1038/ismej.2013.32
    389 rdf:type schema:CreativeWork
    390 sg:pub.10.1038/ismej.2014.129 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033062711
    391 https://doi.org/10.1038/ismej.2014.129
    392 rdf:type schema:CreativeWork
    393 sg:pub.10.1038/ismej.2014.227 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000756789
    394 https://doi.org/10.1038/ismej.2014.227
    395 rdf:type schema:CreativeWork
    396 sg:pub.10.1038/ismej.2015.44 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048770248
    397 https://doi.org/10.1038/ismej.2015.44
    398 rdf:type schema:CreativeWork
    399 sg:pub.10.1038/nature01240 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002567996
    400 https://doi.org/10.1038/nature01240
    401 rdf:type schema:CreativeWork
    402 sg:pub.10.1038/nature12352 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019299949
    403 https://doi.org/10.1038/nature12352
    404 rdf:type schema:CreativeWork
    405 sg:pub.10.1038/ncomms3120 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002664779
    406 https://doi.org/10.1038/ncomms3120
    407 rdf:type schema:CreativeWork
    408 sg:pub.10.1038/ngeo1739 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018356622
    409 https://doi.org/10.1038/ngeo1739
    410 rdf:type schema:CreativeWork
    411 sg:pub.10.1038/nmeth.3176 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023901695
    412 https://doi.org/10.1038/nmeth.3176
    413 rdf:type schema:CreativeWork
    414 sg:pub.10.1038/srep00013 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042646065
    415 https://doi.org/10.1038/srep00013
    416 rdf:type schema:CreativeWork
    417 sg:pub.10.1186/1471-2105-11-485 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030070956
    418 https://doi.org/10.1186/1471-2105-11-485
    419 rdf:type schema:CreativeWork
    420 sg:pub.10.1186/gb-2011-12-3-r26 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028666137
    421 https://doi.org/10.1186/gb-2011-12-3-r26
    422 rdf:type schema:CreativeWork
    423 grid-institutes:grid.10825.3e schema:alternateName Department of Biology and Nordic Center for Earth Evolution (NordCEE), University of Southern Denmark, Odense, Denmark
    424 schema:name Department of Biology and Nordic Center for Earth Evolution (NordCEE), University of Southern Denmark, Odense, Denmark
    425 rdf:type schema:Organization
    426 grid-institutes:grid.213917.f schema:alternateName School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332
    427 School of Civil and Environmental Engineering, Georgia Institute of Technology, Ford Environmental Science & Technology Building, 311 Ferst Drive, Atlanta, GA 30332
    428 School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332
    429 schema:name School of Biology, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332
    430 School of Civil and Environmental Engineering, Georgia Institute of Technology, Ford Environmental Science & Technology Building, 311 Ferst Drive, Atlanta, GA 30332
    431 School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Ford Environmental Sciences & Technology Building, 311 Ferst Drive, Atlanta, GA 30332
    432 rdf:type schema:Organization
    433 grid-institutes:grid.253245.7 schema:alternateName Department of Biology, Bowdoin College, 255 Maine St, Brunswick, ME 04011
    434 schema:name Department of Biology, Bowdoin College, 255 Maine St, Brunswick, ME 04011
    435 rdf:type schema:Organization
    436 grid-institutes:grid.419529.2 schema:alternateName Biochemistry Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany
    437 schema:name Biochemistry Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany
    438 rdf:type schema:Organization
    439 grid-institutes:grid.451309.a schema:alternateName Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598
    440 schema:name Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598
    441 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...