Comprehensive molecular characterization of gastric adenocarcinoma View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-07-23

AUTHORS

Adam J. Bass, Vesteinn Thorsson, Ilya Shmulevich, Sheila M. Reynolds, Michael Miller, Brady Bernard, Toshinori Hinoue, Peter W. Laird, Christina Curtis, Hui Shen, Daniel J. Weisenberger, Nikolaus Schultz, Ronglai Shen, Nils Weinhold, David P. Kelsen, Reanne Bowlby, Andy Chu, Katayoon Kasaian, Andrew J. Mungall, A. Gordon Robertson, Payal Sipahimalani, Andrew Cherniack, Gad Getz, Yingchun Liu, Michael S. Noble, Chandra Pedamallu, Carrie Sougnez, Amaro Taylor-Weiner, Rehan Akbani, Ju-Seog Lee, Wenbin Liu, Gordon B. Mills, Da Yang, Wei Zhang, Angeliki Pantazi, Michael Parfenov, Margaret Gulley, M. Blanca Piazuelo, Barbara G. Schneider, Jihun Kim, Alex Boussioutas, Margi Sheth, John A. Demchok, Charles S. Rabkin, Joseph E. Willis, Sam Ng, Katherine Garman, David G. Beer, Arjun Pennathur, Benjamin J. Raphael, Hsin-Ta Wu, Robert Odze, Hark K. Kim, Jay Bowen, Kristen M. Leraas, Tara M. Lichtenberg, Stephanie Weaver, Michael McLellan, Maciej Wiznerowicz, Ryo Sakai, Gad Getz, Carrie Sougnez, Michael S. Lawrence, Kristian Cibulskis, Lee Lichtenstein, Sheila Fisher, Stacey B. Gabriel, Eric S. Lander, Li Ding, Beifang Niu, Adrian Ally, Miruna Balasundaram, Inanc Birol, Reanne Bowlby, Denise Brooks, Yaron S. N. Butterfield, Rebecca Carlsen, Andy Chu, Justin Chu, Eric Chuah, Hye-Jung E. Chun, Amanda Clarke, Noreen Dhalla, Ranabir Guin, Robert A. Holt, Steven J.M. Jones, Katayoon Kasaian, Darlene Lee, Haiyan A. Li, Emilia Lim, Yussanne Ma, Marco A. Marra, Michael Mayo, Richard A. Moore, Andrew J. Mungall, Karen L. Mungall, Ka Ming Nip, A. Gordon Robertson, Jacqueline E. Schein, Payal Sipahimalani, Angela Tam, Nina Thiessen, Rameen Beroukhim, Scott L. Carter, Andrew D. Cherniack, Juok Cho, Kristian Cibulskis, Daniel DiCara, Scott Frazer, Sheila Fisher, Stacey B. Gabriel, Nils Gehlenborg, David I. Heiman, Joonil Jung, Jaegil Kim, Eric S. Lander, Michael S. Lawrence, Lee Lichtenstein, Pei Lin, Matthew Meyerson, Akinyemi I. Ojesina, Chandra Sekhar Pedamallu, Gordon Saksena, Steven E. Schumacher, Carrie Sougnez, Petar Stojanov, Barbara Tabak, Amaro Taylor-Weiner, Doug Voet, Mara Rosenberg, Travis I. Zack, Hailei Zhang, Lihua Zou, Alexei Protopopov, Netty Santoso, Michael Parfenov, Semin Lee, Jianhua Zhang, Harshad S. Mahadeshwar, Jiabin Tang, Xiaojia Ren, Sahil Seth, Lixing Yang, Andrew W. Xu, Xingzhi Song, Angeliki Pantazi, Ruibin Xi, Christopher A. Bristow, Angela Hadjipanayis, Jonathan Seidman, Lynda Chin, Peter J. Park, Raju Kucherlapati, Rehan Akbani, Shiyun Ling, Wenbin Liu, Arvind Rao, John N. Weinstein, Sang-Bae Kim, Ju-Seog Lee, Yiling Lu, Gordon Mills, Peter W. Laird, Toshinori Hinoue, Daniel J. Weisenberger, Moiz S. Bootwalla, Phillip H. Lai, Hui Shen, Timothy Triche, David J. Van Den Berg, Stephen B. Baylin, James G. Herman, Gad Getz, Lynda Chin, Yingchun Liu, Bradley A. Murray, Michael S. Noble, B. Arman Askoy, Giovanni Ciriello, Gideon Dresdner, Jianjiong Gao, Benjamin Gross, Anders Jacobsen, William Lee, Ricardo Ramirez, Chris Sander, Nikolaus Schultz, Yasin Senbabaoglu, Rileen Sinha, S. Onur Sumer, Yichao Sun, Nils Weinhold, Vésteinn Thorsson, Brady Bernard, Lisa Iype, Roger W. Kramer, Richard Kreisberg, Michael Miller, Sheila M. Reynolds, Hector Rovira, Natalie Tasman, Ilya Shmulevich, Santa Cruz Sam Ng, David Haussler, Josh M. Stuart, Rehan Akbani, Shiyun Ling, Wenbin Liu, Arvind Rao, John N. Weinstein, Roeland G.W. Verhaak, Gordon B. Mills, Mark D. M. Leiserson, Benjamin J. Raphael, Hsin-Ta Wu, Barry S. Taylor, Aaron D. Black, Jay Bowen, Julie Ann Carney, Julie M. Gastier-Foster, Carmen Helsel, Kristen M. Leraas, Tara M. Lichtenberg, Cynthia McAllister, Nilsa C. Ramirez, Teresa R. Tabler, Lisa Wise, Erik Zmuda, Robert Penny, Daniel Crain, Johanna Gardner, Kevin Lau, Erin Curely, David Mallery, Scott Morris, Joseph Paulauskis, Troy Shelton, Candace Shelton, Mark Sherman, Christopher Benz, Jae-Hyuk Lee, Konstantin Fedosenko, Georgy Manikhas, Olga Potapova, Olga Voronina, Smitry Belyaev, Oleg Dolzhansky, W. Kimryn Rathmell, Jakub Brzezinski, Matthew Ibbs, Konstanty Korski, Witold Kycler, Radoslaw ŁaŸniak, Ewa Leporowska, Andrzej Mackiewicz, Dawid Murawa, Pawel Murawa, Arkadiusz Spychała, Wiktoria M. Suchorska, Honorata Tatka, Marek Teresiak, Maciej Wiznerowicz, Raafat Abdel-Misih, Joseph Bennett, Jennifer Brown, Mary Iacocca, Brenda Rabeno, Sun-Young Kwon, Robert Penny, Johanna Gardner, Ariane Kemkes, David Mallery, Scott Morris, Troy Shelton, Candace Shelton, Erin Curley, Iakovina Alexopoulou, Jay Engel, John Bartlett, Monique Albert, Do-Youn Park, Rajiv Dhir, James Luketich, Rodney Landreneau, Yelena Y. Janjigian, David P. Kelsen, Eunjung Cho, Marc Ladanyi, Laura Tang, Shannon J. McCall, Young S. Park, Jae-Ho Cheong, Jaffer Ajani, M. Constanza Camargo, Shelley Alonso, Brenda Ayala, Mark A. Jensen, Todd Pihl, Rohini Raman, Jessica Walton, Yunhu Wan, John A. Demchok, Greg Eley, Kenna R. Mills Shaw, Margi Sheth, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean Claude Zenklusen, Tanja Davidsen, Carolyn M. Hutter, Heidi J. Sofia, Robert Burton, Sudha Chudamani, Jia Liu

ABSTRACT

Gastric cancer is a leading cause of cancer deaths, but analysis of its molecular and clinical characteristics has been complicated by histological and aetiological heterogeneity. Here we describe a comprehensive molecular evaluation of 295 primary gastric adenocarcinomas as part of The Cancer Genome Atlas (TCGA) project. We propose a molecular classification dividing gastric cancer into four subtypes: tumours positive for Epstein-Barr virus, which display recurrent PIK3CA mutations, extreme DNA hypermethylation, and amplification of JAK2, CD274 (also known as PD-L1) and PDCD1LG2 (also known as PD-L2); microsatellite unstable tumours, which show elevated mutation rates, including mutations of genes encoding targetable oncogenic signalling proteins; genomically stable tumours, which are enriched for the diffuse histological variant and mutations of RHOA or fusions involving RHO-family GTPase-activating proteins; and tumours with chromosomal instability, which show marked aneuploidy and focal amplification of receptor tyrosine kinases. Identification of these subtypes provides a roadmap for patient stratification and trials of targeted therapies. More... »

PAGES

202

Journal

TITLE

Nature

ISSUE

7517

VOLUME

513

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nature13480

DOI

http://dx.doi.org/10.1038/nature13480

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1035707124

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/25079317


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