Bacterial phylogeny structures soil resistomes across habitats View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-05-21

AUTHORS

Kevin J. Forsberg, Sanket Patel, Molly K. Gibson, Christian L. Lauber, Rob Knight, Noah Fierer, Gautam Dantas

ABSTRACT

Functional metagenomic selections for resistance to 18 antibiotics in 18 different soils reveal that bacterial community composition is the primary determinant of soil antibiotic resistance gene content.

PAGES

612-616

References to SciGraph publications

  • 2013-08-25. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences in NATURE BIOTECHNOLOGY
  • 2006-08-07. UniFrac – An online tool for comparing microbial community diversity in a phylogenetic context in BMC BIOINFORMATICS
  • 2011-10-30. Ecology drives a global network of gene exchange connecting the human microbiome in NATURE
  • 2008-10-09. Functional metagenomics reveals diverse β-lactamases in a remote Alaskan soil in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2010-03-01. Call of the wild: antibiotic resistance genes in natural environments in NATURE REVIEWS MICROBIOLOGY
  • 2011-08-31. Antibiotic resistance is ancient in NATURE
  • 2012-02-02. Structure, fluctuation and magnitude of a natural grassland soil metagenome in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2000-08-17. Molecular mechanisms that confer antibacterial drug resistance in NATURE
  • 2011-12-01. Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2010-04-11. QIIME allows analysis of high-throughput community sequencing data in NATURE METHODS
  • 2010-09-09. UniFrac: an effective distance metric for microbial community comparison in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2011-01-31. RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles in BMC BIOINFORMATICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nature13377

    DOI

    http://dx.doi.org/10.1038/nature13377

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/24847883


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