Pan genome of the phytoplankton Emiliania underpins its global distribution View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2013-07

AUTHORS

Betsy A. Read, Jessica Kegel, Mary J. Klute, Alan Kuo, Stephane C. Lefebvre, Florian Maumus, Christoph Mayer, John Miller, Adam Monier, Asaf Salamov, Jeremy Young, Maria Aguilar, Jean-Michel Claverie, Stephan Frickenhaus, Karina Gonzalez, Emily K. Herman, Yao-Cheng Lin, Johnathan Napier, Hiroyuki Ogata, Analissa F. Sarno, Jeremy Shmutz, Declan Schroeder, Colomban de Vargas, Frederic Verret, Peter von Dassow, Klaus Valentin, Yves Van de Peer, Glen Wheeler, Emiliania huxleyi Annotation Consortium, Andrew E. Allen, Kay Bidle, Mark Borodovsky, Chris Bowler, Colin Brownlee, J. Mark Cock, Marek Elias, Vadim N. Gladyshev, Marco Groth, Chittibabu Guda, Ahmad Hadaegh, Maria Debora Iglesias-Rodriguez, Jerry Jenkins, Bethan M. Jones, Tracy Lawson, Florian Leese, Erika Lindquist, Alexei Lobanov, Alexandre Lomsadze, Shehre-Banoo Malik, Mary E. Marsh, Luke Mackinder, Thomas Mock, Bernd Mueller-Roeber, António Pagarete, Micaela Parker, Ian Probert, Hadi Quesneville, Christine Raines, Stefan A. Rensing, Diego Mauricio Riaño-Pachón, Sophie Richier, Sebastian Rokitta, Yoshihiro Shiraiwa, Darren M. Soanes, Mark van der Giezen, Thomas M. Wahlund, Bryony Williams, Willie Wilson, Gordon Wolfe, Louie L. Wurch, Joel B. Dacks, Charles F. Delwiche, Sonya T. Dyhrman, Gernot Glöckner, Uwe John, Thomas Richards, Alexandra Z. Worden, Xiaoyu Zhang, Igor V. Grigoriev

ABSTRACT

Coccolithophores have influenced the global climate for over 200 million years. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering them visible from space. Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions. More... »

PAGES

209

Journal

TITLE

Nature

ISSUE

7457

VOLUME

499

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nature12221

DOI

http://dx.doi.org/10.1038/nature12221

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1021818497

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/23760476


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