Ontology type: schema:ScholarlyArticle
2013-03
AUTHORSYasuhide Inokuma, Shota Yoshioka, Junko Ariyoshi, Tatsuhiko Arai, Yuki Hitora, Kentaro Takada, Shigeki Matsunaga, Kari Rissanen, Makoto Fujita
ABSTRACTX-ray single-crystal diffraction (SCD) analysis has the intrinsic limitation that the target molecules must be obtained as single crystals. Here we report a protocol for SCD analysis that does not require the crystallization of the sample. In our method, tiny crystals of porous complexes are soaked in a solution of the target, such that the complexes can absorb the target molecules. Crystallographic analysis clearly determines the absorbed guest structures along with the host frameworks. Because the SCD analysis is carried out on only one tiny crystal of the complex, the required sample mass is of the nanogram-microgram order. We demonstrate that as little as about 80 nanograms of a sample is enough for the SCD analysis. In combination with high-performance liquid chromatography, our protocol allows the direct characterization of multiple fractions, establishing a prototypical means of liquid chromatography SCD analysis. Furthermore, we unambiguously determined the structure of a scarce marine natural product using only 5 micrograms of the compound. More... »
PAGES461
http://scigraph.springernature.com/pub.10.1038/nature11990
DOIhttp://dx.doi.org/10.1038/nature11990
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1025229186
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/23538828
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0303",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Macromolecular and Materials Chemistry",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/03",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Chemical Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Absorption",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Alkynes",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Analytic Sample Preparation Methods",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Biological Products",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Crystallization",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Crystallography, X-Ray",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Fatty Alcohols",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Microchemistry",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Nanotechnology",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Porifera",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Porosity",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "University of Tokyo",
"id": "https://www.grid.ac/institutes/grid.26999.3d",
"name": [
"Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan"
],
"type": "Organization"
},
"familyName": "Inokuma",
"givenName": "Yasuhide",
"id": "sg:person.0744511146.86",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0744511146.86"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Tokyo",
"id": "https://www.grid.ac/institutes/grid.26999.3d",
"name": [
"Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan"
],
"type": "Organization"
},
"familyName": "Yoshioka",
"givenName": "Shota",
"id": "sg:person.0716604574.11",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0716604574.11"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Tokyo",
"id": "https://www.grid.ac/institutes/grid.26999.3d",
"name": [
"Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan"
],
"type": "Organization"
},
"familyName": "Ariyoshi",
"givenName": "Junko",
"id": "sg:person.0764717774.04",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0764717774.04"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Tokyo",
"id": "https://www.grid.ac/institutes/grid.26999.3d",
"name": [
"Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan"
],
"type": "Organization"
},
"familyName": "Arai",
"givenName": "Tatsuhiko",
"id": "sg:person.01033033174.02",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01033033174.02"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Tokyo",
"id": "https://www.grid.ac/institutes/grid.26999.3d",
"name": [
"Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Science, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan"
],
"type": "Organization"
},
"familyName": "Hitora",
"givenName": "Yuki",
"id": "sg:person.01101146374.01",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01101146374.01"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Tokyo",
"id": "https://www.grid.ac/institutes/grid.26999.3d",
"name": [
"Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Science, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan"
],
"type": "Organization"
},
"familyName": "Takada",
"givenName": "Kentaro",
"id": "sg:person.01147261574.02",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01147261574.02"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Tokyo",
"id": "https://www.grid.ac/institutes/grid.26999.3d",
"name": [
"Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Science, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan"
],
"type": "Organization"
},
"familyName": "Matsunaga",
"givenName": "Shigeki",
"id": "sg:person.01136071707.26",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01136071707.26"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Jyv\u00e4skyl\u00e4",
"id": "https://www.grid.ac/institutes/grid.9681.6",
"name": [
"Department of Chemistry, NanoScience Center, University of Jyv\u00e4skyl\u00e4, PO Box 35, 40014 Jyv\u00e4skyl\u00e4, Finland"
],
"type": "Organization"
},
"familyName": "Rissanen",
"givenName": "Kari",
"id": "sg:person.01234776006.79",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01234776006.79"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Tokyo",
"id": "https://www.grid.ac/institutes/grid.26999.3d",
"name": [
"Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan"
],
"type": "Organization"
},
"familyName": "Fujita",
"givenName": "Makoto",
"id": "sg:person.01224107340.67",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01224107340.67"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1021/ja908794n",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004812980"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja908794n",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004812980"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nchem.742",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005006147",
"https://doi.org/10.1038/nchem.742"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1039/b618320b",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011478070"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/168271a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014736150",
"https://doi.org/10.1038/168271a0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0108767399004262",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018048437"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/bmc.718",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018267881"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.199717251",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018874595"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/chir.10287",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018951312"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.196603851",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019777137"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.200805340",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020897323"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.200805340",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020897323"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja046478a",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024495997"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja046478a",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024495997"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature01650",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027719504",
"https://doi.org/10.1038/nature01650"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature01650",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027719504",
"https://doi.org/10.1038/nature01650"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/s0108767307043930",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027786902"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.200300610",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027885687"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/1521-3773(20020916)41:18<3392::aid-anie3392>3.0.co;2-v",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031525267"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/anie.200700999",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033828136"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/378469a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034276321",
"https://doi.org/10.1038/378469a0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.lfs.2009.02.028",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037267143"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1039/b802426j",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037490321"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1039/b802426j",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037490321"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tet.2011.04.085",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041135579"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/(sici)1521-3773(19980619)37:11<1460::aid-anie1460>3.0.co;2-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045969711"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ccr.2007.07.022",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050143442"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2116/analsci.7.183",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052107560"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nchem.1031",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052565742",
"https://doi.org/10.1038/nchem.1031"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ar100023y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053229956"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ar100023y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053229956"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1039/b604925g",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053392997"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1039/c39800000495",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053480973"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/cr000665j",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1054046340"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/cr000665j",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1054046340"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja00082a055",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055705307"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja01609a076",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055812112"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja042420k",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055835578"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja042420k",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055835578"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja209290t",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055851262"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja209290t",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055851262"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/jf102730b",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055908639"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/jf102730b",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055908639"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/np200271n",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1056231616"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/np200271n",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1056231616"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1078481",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062447130"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1175441",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062460261"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1175441",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062460261"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.5860/choice.47-5024",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1073438341"
],
"type": "CreativeWork"
}
],
"datePublished": "2013-03",
"datePublishedReg": "2013-03-01",
"description": "X-ray single-crystal diffraction (SCD) analysis has the intrinsic limitation that the target molecules must be obtained as single crystals. Here we report a protocol for SCD analysis that does not require the crystallization of the sample. In our method, tiny crystals of porous complexes are soaked in a solution of the target, such that the complexes can absorb the target molecules. Crystallographic analysis clearly determines the absorbed guest structures along with the host frameworks. Because the SCD analysis is carried out on only one tiny crystal of the complex, the required sample mass is of the nanogram-microgram order. We demonstrate that as little as about 80\u2009nanograms of a sample is enough for the SCD analysis. In combination with high-performance liquid chromatography, our protocol allows the direct characterization of multiple fractions, establishing a prototypical means of liquid chromatography SCD analysis. Furthermore, we unambiguously determined the structure of a scarce marine natural product using only 5\u2009micrograms of the compound.",
"genre": "research_article",
"id": "sg:pub.10.1038/nature11990",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.6067221",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.5788852",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1018957",
"issn": [
"0090-0028",
"1476-4687"
],
"name": "Nature",
"type": "Periodical"
},
{
"issueNumber": "7442",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "495"
}
],
"name": "X-ray analysis on the nanogram to microgram scale using porous complexes",
"pagination": "461",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"783131d21fb88d1a358bb3608ee7429bb17f0caef3baf2585030910fd1bfdd39"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"23538828"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"0410462"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/nature11990"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1025229186"
]
}
],
"sameAs": [
"https://doi.org/10.1038/nature11990",
"https://app.dimensions.ai/details/publication/pub.1025229186"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T19:45",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8681_00000424.jsonl",
"type": "ScholarlyArticle",
"url": "https://www.nature.com/articles/nature11990"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nature11990'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nature11990'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nature11990'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nature11990'
This table displays all metadata directly associated to this object as RDF triples.
297 TRIPLES
21 PREDICATES
78 URIs
33 LITERALS
21 BLANK NODES