Functional metagenomic profiling of nine biomes View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2008-04

AUTHORS

Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary Ann Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran Rodriguez Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca Vega Thurber, Linda Wegley, Bryan A. White, Forest Rohwer

ABSTRACT

Microbial activities shape the biogeochemistry of the planet and macroorganism health. Determining the metabolic processes performed by microbes is important both for understanding and for manipulating ecosystems (for example, disruption of key processes that lead to disease, conservation of environmental services, and so on). Describing microbial function is hampered by the inability to culture most microbes and by high levels of genomic plasticity. Metagenomic approaches analyse microbial communities to determine the metabolic processes that are important for growth and survival in any given environment. Here we conduct a metagenomic comparison of almost 15 million sequences from 45 distinct microbiomes and, for the first time, 42 distinct viromes and show that there are strongly discriminatory metabolic profiles across environments. Most of the functional diversity was maintained in all of the communities, but the relative occurrence of metabolisms varied, and the differences between metagenomes predicted the biogeochemical conditions of each environment. The magnitude of the microbial metabolic capabilities encoded by the viromes was extensive, suggesting that they serve as a repository for storing and sharing genes among their microbial hosts and influence global evolutionary and metabolic processes. More... »

PAGES

629

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/nature06810

DOI

http://dx.doi.org/10.1038/nature06810

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1047805213

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/18337718


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Animals", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Anthozoa", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Archaea", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Bacteria", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chemotaxis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Computational Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Culicidae", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Ecosystem", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Fishes", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Fresh Water", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gene Expression Profiling", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Archaeal", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Bacterial", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Viral", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Seawater", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Viruses", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Flinders University", 
          "id": "https://www.grid.ac/institutes/grid.1014.4", 
          "name": [
            "Department of Biology,", 
            "School of Biological Sciences, Flinders University, Adelaide, South Australia 5042, Australia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Dinsdale", 
        "givenName": "Elizabeth A.", 
        "id": "sg:person.01040724241.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040724241.02"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Argonne National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Department of Biology,", 
            "Center for Microbial Sciences,", 
            "Department of Computer Sciences, and,", 
            "Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois 60439, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Edwards", 
        "givenName": "Robert A.", 
        "id": "sg:person.01136331207.33", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01136331207.33"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Biology,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hall", 
        "givenName": "Dana", 
        "id": "sg:person.01004505617.97", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004505617.97"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "San Diego State University", 
          "id": "https://www.grid.ac/institutes/grid.263081.e", 
          "name": [
            "Department of Biology,", 
            "Computational Science Research Centre, San Diego State University, San Diego, California 92182, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Angly", 
        "givenName": "Florent", 
        "id": "sg:person.01070216007.87", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01070216007.87"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of South Florida", 
          "id": "https://www.grid.ac/institutes/grid.170693.a", 
          "name": [
            "University of South Florida, College of Marine Science, 140 7th Avenue South, St Petersburg, Florida 33701, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Breitbart", 
        "givenName": "Mya", 
        "id": "sg:person.01021303536.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021303536.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Animal Sciences, and,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Brulc", 
        "givenName": "Jennifer M.", 
        "id": "sg:person.01062533764.12", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01062533764.12"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Biology,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Furlan", 
        "givenName": "Mike", 
        "id": "sg:person.01362257306.84", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362257306.84"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Biology,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Desnues", 
        "givenName": "Christelle", 
        "id": "sg:person.01336527215.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336527215.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Biology,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Haynes", 
        "givenName": "Matthew", 
        "id": "sg:person.0636653206.93", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0636653206.93"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Biology,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Li", 
        "givenName": "Linlin", 
        "id": "sg:person.01313105165.66", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01313105165.66"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of South Florida", 
          "id": "https://www.grid.ac/institutes/grid.170693.a", 
          "name": [
            "University of South Florida, College of Marine Science, 140 7th Avenue South, St Petersburg, Florida 33701, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "McDaniel", 
        "givenName": "Lauren", 
        "id": "sg:person.01044565341.40", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01044565341.40"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Georgia", 
          "id": "https://www.grid.ac/institutes/grid.213876.9", 
          "name": [
            "Department of Marine Sciences, University of Georgia, Athens, 30602 Georgia, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Moran", 
        "givenName": "Mary Ann", 
        "id": "sg:person.01215610154.59", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01215610154.59"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "J. Craig Venter Institute", 
          "id": "https://www.grid.ac/institutes/grid.469946.0", 
          "name": [
            "The J. Craig Venter Institute, 9712 Medical Center Drive, Rockville, Maryland 20850, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nelson", 
        "givenName": "Karen E.", 
        "id": "sg:person.01213406210.22", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213406210.22"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Genome Institute of Singapore", 
          "id": "https://www.grid.ac/institutes/grid.418377.e", 
          "name": [
            "Genome Institute of Singapore, 60 Biopolis Street, 02-01, Genome, Singapore 138672, Singapore"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nilsson", 
        "givenName": "Christina", 
        "id": "sg:person.01227127141.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01227127141.38"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Argonne National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois 60439, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Olson", 
        "givenName": "Robert", 
        "id": "sg:person.01021612334.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021612334.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of South Florida", 
          "id": "https://www.grid.ac/institutes/grid.170693.a", 
          "name": [
            "University of South Florida, College of Marine Science, 140 7th Avenue South, St Petersburg, Florida 33701, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Paul", 
        "givenName": "John", 
        "id": "sg:person.014422704722.99", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014422704722.99"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "San Diego State University", 
          "id": "https://www.grid.ac/institutes/grid.263081.e", 
          "name": [
            "Department of Biology,", 
            "Computational Science Research Centre, San Diego State University, San Diego, California 92182, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Brito", 
        "givenName": "Beltran Rodriguez", 
        "id": "sg:person.0617751441.06", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617751441.06"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Genome Institute of Singapore", 
          "id": "https://www.grid.ac/institutes/grid.418377.e", 
          "name": [
            "Genome Institute of Singapore, 60 Biopolis Street, 02-01, Genome, Singapore 138672, Singapore"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ruan", 
        "givenName": "Yijun", 
        "id": "sg:person.013335137357.86", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013335137357.86"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, Santa Barbara", 
          "id": "https://www.grid.ac/institutes/grid.133342.4", 
          "name": [
            "Department of Earth Science, University of California Santa Barbara, Santa Barbara, California 93106, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Swan", 
        "givenName": "Brandon K.", 
        "id": "sg:person.01147435060.08", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01147435060.08"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Argonne National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois 60439, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Stevens", 
        "givenName": "Rick", 
        "id": "sg:person.0707416220.12", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707416220.12"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, Santa Barbara", 
          "id": "https://www.grid.ac/institutes/grid.133342.4", 
          "name": [
            "Department of Earth Science, University of California Santa Barbara, Santa Barbara, California 93106, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Valentine", 
        "givenName": "David L.", 
        "id": "sg:person.0616303347.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0616303347.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Biology,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Thurber", 
        "givenName": "Rebecca Vega", 
        "id": "sg:person.01351411217.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01351411217.16"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Biology,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wegley", 
        "givenName": "Linda", 
        "id": "sg:person.0661532307.68", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0661532307.68"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Illinois at Urbana Champaign", 
          "id": "https://www.grid.ac/institutes/grid.35403.31", 
          "name": [
            "Department of Animal Sciences, and,", 
            "The Institute for Genomic Biology, University of Illinois, Urbana, Illinois 61801, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "White", 
        "givenName": "Bryan A.", 
        "id": "sg:person.01140156265.31", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01140156265.31"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of Biology,", 
            "Center for Microbial Sciences,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Rohwer", 
        "givenName": "Forest", 
        "id": "sg:person.0606340210.26", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606340210.26"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/nature04435", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000290333", 
          "https://doi.org/10.1038/nature04435"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature04435", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000290333", 
          "https://doi.org/10.1038/nature04435"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature04435", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000290333", 
          "https://doi.org/10.1038/nature04435"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.202488399", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000518725"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/tpbi.2002.1590", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001743889"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nrmicro1643", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1003287226", 
          "https://doi.org/10.1038/nrmicro1643"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nrmicro1643", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1003287226", 
          "https://doi.org/10.1038/nrmicro1643"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1120250", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1003341152"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1471-8286.2007.01696.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005400703"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-9-386", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006083026", 
          "https://doi.org/10.1186/1471-2105-9-386"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pbio.0040368", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008667169"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gki866", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009961531"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.00358-07", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013422473"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nrg1709", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017719492", 
          "https://doi.org/10.1038/nrg1709"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nrg1709", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017719492", 
          "https://doi.org/10.1038/nrg1709"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nrm1524", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017946773", 
          "https://doi.org/10.1038/nrm1524"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nrm1524", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017946773", 
          "https://doi.org/10.1038/nrm1524"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/4441022a", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018798093", 
          "https://doi.org/10.1038/4441022a"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/4441022a", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018798093", 
          "https://doi.org/10.1038/4441022a"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/4441022a", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018798093", 
          "https://doi.org/10.1038/4441022a"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2164-7-57", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020041008", 
          "https://doi.org/10.1186/1471-2164-7-57"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature03959", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021574562", 
          "https://doi.org/10.1038/nature03959"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature03959", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021574562", 
          "https://doi.org/10.1038/nature03959"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/424741b", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022675734", 
          "https://doi.org/10.1038/424741b"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/424741b", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022675734", 
          "https://doi.org/10.1038/424741b"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1462-2920.2007.01383.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023137141"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.gde.2005.09.006", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025951592"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.96.5.2192", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027482683"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jb.00592-06", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028649303"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkh065", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029580198"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkl889", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029901284"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/424741a", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031785841", 
          "https://doi.org/10.1038/424741a"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/424741a", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031785841", 
          "https://doi.org/10.1038/424741a"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jb.185.20.6220-6223.2003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031906359"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.03006-05", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034568952"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1122050", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035993150"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.aquaculture.2006.07.038", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036739528"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0168-9525(01)02447-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043209720"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.70.10.5842-5846.2004", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047135912"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.0611525104", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050913510"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0001584", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050937455"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.66.7.2943-2950.2000", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052724923"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.4319/lo.2000.45.2.0408", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053428058"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1010716", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062442412"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2144/000112019", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1069095203"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/1542485", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1069532635"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2008-04", 
    "datePublishedReg": "2008-04-01", 
    "description": "Microbial activities shape the biogeochemistry of the planet and macroorganism health. Determining the metabolic processes performed by microbes is important both for understanding and for manipulating ecosystems (for example, disruption of key processes that lead to disease, conservation of environmental services, and so on). Describing microbial function is hampered by the inability to culture most microbes and by high levels of genomic plasticity. Metagenomic approaches analyse microbial communities to determine the metabolic processes that are important for growth and survival in any given environment. Here we conduct a metagenomic comparison of almost 15 million sequences from 45 distinct microbiomes and, for the first time, 42 distinct viromes and show that there are strongly discriminatory metabolic profiles across environments. Most of the functional diversity was maintained in all of the communities, but the relative occurrence of metabolisms varied, and the differences between metagenomes predicted the biogeochemical conditions of each environment. The magnitude of the microbial metabolic capabilities encoded by the viromes was extensive, suggesting that they serve as a repository for storing and sharing genes among their microbial hosts and influence global evolutionary and metabolic processes.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1038/nature06810", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1018957", 
        "issn": [
          "0090-0028", 
          "1476-4687"
        ], 
        "name": "Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "7187", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "452"
      }
    ], 
    "name": "Functional metagenomic profiling of nine biomes", 
    "pagination": "629", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "e3bb4d57e8baa06ba4002dab64fabac94e325c7c73f55921e34c64f25faab55e"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "18337718"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "0410462"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/nature06810"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1047805213"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/nature06810", 
      "https://app.dimensions.ai/details/publication/pub.1047805213"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T21:25", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8687_00000426.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://www.nature.com/articles/nature06810"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/nature06810'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/nature06810'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/nature06810'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/nature06810'


 

This table displays all metadata directly associated to this object as RDF triples.

476 TRIPLES      21 PREDICATES      83 URIs      39 LITERALS      27 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/nature06810 schema:about N0b850fdd001f4c4a804ca701f7d32fb2
2 N21089c24e6804562803b0c828224b73f
3 N2fd6049c401b4a8eb538c6e15434392c
4 N54bd2b4c6e894d08967139103e3e19c8
5 N5f5caf5e0c564c13b8e9b215d6f04e12
6 N5faa6bb528b34c719611e399f548b29c
7 N704f63e20e4d482baf5f0174016af99b
8 N7d3e6bc1daf54049a1e62c10d7fde4d4
9 N7e3694658c5e41c49947c7da0d533aa4
10 N81578c45f74b4a5cb539e38da6b21182
11 N85556f4bb0d94ccab82da7f29b5e0e19
12 N942e330ec36446608e21ec160a93a393
13 Na4db33027eb648629987a1ab7867ec97
14 Nb0b5cca0243f4e0d85ba4e112cdbf466
15 Ncd6126836c9a4b93bb9e789d398eb164
16 Ncfd40a30a32a43bd8373311edd1e2ad2
17 Nd33f725863c648baad22bf08803c1cac
18 Nd47538a7d9724288b8d0d5334ce11896
19 anzsrc-for:06
20 anzsrc-for:0605
21 schema:author N7350ecfd8a444a1286457ec8eaea3ae2
22 schema:citation sg:pub.10.1038/424741a
23 sg:pub.10.1038/424741b
24 sg:pub.10.1038/4441022a
25 sg:pub.10.1038/nature03959
26 sg:pub.10.1038/nature04435
27 sg:pub.10.1038/nrg1709
28 sg:pub.10.1038/nrm1524
29 sg:pub.10.1038/nrmicro1643
30 sg:pub.10.1186/1471-2105-9-386
31 sg:pub.10.1186/1471-2164-7-57
32 https://doi.org/10.1006/tpbi.2002.1590
33 https://doi.org/10.1016/j.aquaculture.2006.07.038
34 https://doi.org/10.1016/j.gde.2005.09.006
35 https://doi.org/10.1016/s0168-9525(01)02447-7
36 https://doi.org/10.1073/pnas.0611525104
37 https://doi.org/10.1073/pnas.202488399
38 https://doi.org/10.1073/pnas.96.5.2192
39 https://doi.org/10.1093/nar/gkh065
40 https://doi.org/10.1093/nar/gki866
41 https://doi.org/10.1093/nar/gkl889
42 https://doi.org/10.1111/j.1462-2920.2007.01383.x
43 https://doi.org/10.1111/j.1471-8286.2007.01696.x
44 https://doi.org/10.1126/science.1010716
45 https://doi.org/10.1126/science.1120250
46 https://doi.org/10.1126/science.1122050
47 https://doi.org/10.1128/aem.00358-07
48 https://doi.org/10.1128/aem.03006-05
49 https://doi.org/10.1128/aem.66.7.2943-2950.2000
50 https://doi.org/10.1128/aem.70.10.5842-5846.2004
51 https://doi.org/10.1128/jb.00592-06
52 https://doi.org/10.1128/jb.185.20.6220-6223.2003
53 https://doi.org/10.1371/journal.pbio.0040368
54 https://doi.org/10.1371/journal.pone.0001584
55 https://doi.org/10.2144/000112019
56 https://doi.org/10.2307/1542485
57 https://doi.org/10.4319/lo.2000.45.2.0408
58 schema:datePublished 2008-04
59 schema:datePublishedReg 2008-04-01
60 schema:description Microbial activities shape the biogeochemistry of the planet and macroorganism health. Determining the metabolic processes performed by microbes is important both for understanding and for manipulating ecosystems (for example, disruption of key processes that lead to disease, conservation of environmental services, and so on). Describing microbial function is hampered by the inability to culture most microbes and by high levels of genomic plasticity. Metagenomic approaches analyse microbial communities to determine the metabolic processes that are important for growth and survival in any given environment. Here we conduct a metagenomic comparison of almost 15 million sequences from 45 distinct microbiomes and, for the first time, 42 distinct viromes and show that there are strongly discriminatory metabolic profiles across environments. Most of the functional diversity was maintained in all of the communities, but the relative occurrence of metabolisms varied, and the differences between metagenomes predicted the biogeochemical conditions of each environment. The magnitude of the microbial metabolic capabilities encoded by the viromes was extensive, suggesting that they serve as a repository for storing and sharing genes among their microbial hosts and influence global evolutionary and metabolic processes.
61 schema:genre research_article
62 schema:inLanguage en
63 schema:isAccessibleForFree false
64 schema:isPartOf N903f3b2350ec49b59928c86714423f99
65 Nda93eafac80b42e59b39f3b44b41f183
66 sg:journal.1018957
67 schema:name Functional metagenomic profiling of nine biomes
68 schema:pagination 629
69 schema:productId N0e674b43fd4047088bf0730635826f94
70 N531eaca7e23b4d54aa076950115be4db
71 N54a142a3890e4c90af2e2ab7e34189f6
72 N596947e5cdd24e5eb970c920e1df152e
73 N82bb788b17d44c75bb2bcda4c5d794de
74 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047805213
75 https://doi.org/10.1038/nature06810
76 schema:sdDatePublished 2019-04-10T21:25
77 schema:sdLicense https://scigraph.springernature.com/explorer/license/
78 schema:sdPublisher N1eba5f5a83dd430087bd6aaddbfd5769
79 schema:url https://www.nature.com/articles/nature06810
80 sgo:license sg:explorer/license/
81 sgo:sdDataset articles
82 rdf:type schema:ScholarlyArticle
83 N0861a70e06154612a240da871f804963 rdf:first sg:person.013335137357.86
84 rdf:rest Nb590bd00eec64ed9b15608df903c8bed
85 N0b850fdd001f4c4a804ca701f7d32fb2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
86 schema:name Fresh Water
87 rdf:type schema:DefinedTerm
88 N0e674b43fd4047088bf0730635826f94 schema:name readcube_id
89 schema:value e3bb4d57e8baa06ba4002dab64fabac94e325c7c73f55921e34c64f25faab55e
90 rdf:type schema:PropertyValue
91 N11843e51bc0449529d23de45e6ee044e rdf:first sg:person.0636653206.93
92 rdf:rest N6a5007448e5f4bedad984cdb37b81aa8
93 N11f4b59db49c4e888067016a3b64adae schema:name Department of Biology,
94 rdf:type schema:Organization
95 N1753eb3e5cc44b8aa1b73460337646d7 rdf:first sg:person.01140156265.31
96 rdf:rest N399ebff6e2704cf3b77ed05ec2b21d53
97 N1eba5f5a83dd430087bd6aaddbfd5769 schema:name Springer Nature - SN SciGraph project
98 rdf:type schema:Organization
99 N21089c24e6804562803b0c828224b73f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
100 schema:name Ecosystem
101 rdf:type schema:DefinedTerm
102 N2cff05d045fc4920b765b55891b5d6b6 rdf:first sg:person.01213406210.22
103 rdf:rest N45f85ff9870c48db9bcdbe7461a52c19
104 N2fd6049c401b4a8eb538c6e15434392c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
105 schema:name Culicidae
106 rdf:type schema:DefinedTerm
107 N348dbd16568748289b6da060951258ac rdf:first sg:person.01070216007.87
108 rdf:rest N4295e77a41aa43a0ae732b6a1c80f2f9
109 N399ebff6e2704cf3b77ed05ec2b21d53 rdf:first sg:person.0606340210.26
110 rdf:rest rdf:nil
111 N40a2a8b059b54e2aa0c4111e22a78c21 schema:name Department of Biology,
112 rdf:type schema:Organization
113 N4295e77a41aa43a0ae732b6a1c80f2f9 rdf:first sg:person.01021303536.04
114 rdf:rest Nc1bb7ffc652f4a0d8d32e5790b6675bd
115 N45f85ff9870c48db9bcdbe7461a52c19 rdf:first sg:person.01227127141.38
116 rdf:rest Na73d90e1541c418fa93b5af670fe95e4
117 N531eaca7e23b4d54aa076950115be4db schema:name doi
118 schema:value 10.1038/nature06810
119 rdf:type schema:PropertyValue
120 N54a142a3890e4c90af2e2ab7e34189f6 schema:name dimensions_id
121 schema:value pub.1047805213
122 rdf:type schema:PropertyValue
123 N54bd2b4c6e894d08967139103e3e19c8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
124 schema:name Computational Biology
125 rdf:type schema:DefinedTerm
126 N596947e5cdd24e5eb970c920e1df152e schema:name nlm_unique_id
127 schema:value 0410462
128 rdf:type schema:PropertyValue
129 N5c6d461e71e34da9a95f9d95e14b1d71 rdf:first sg:person.01336527215.04
130 rdf:rest N11843e51bc0449529d23de45e6ee044e
131 N5f5caf5e0c564c13b8e9b215d6f04e12 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
132 schema:name Genome, Archaeal
133 rdf:type schema:DefinedTerm
134 N5faa6bb528b34c719611e399f548b29c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
135 schema:name Chemotaxis
136 rdf:type schema:DefinedTerm
137 N6a5007448e5f4bedad984cdb37b81aa8 rdf:first sg:person.01313105165.66
138 rdf:rest N6c733b0ff9ab435b8dbee18dc31576f4
139 N6c733b0ff9ab435b8dbee18dc31576f4 rdf:first sg:person.01044565341.40
140 rdf:rest Nc185d824ab8741bfbbcfdd4203148c0f
141 N704f63e20e4d482baf5f0174016af99b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
142 schema:name Genome, Bacterial
143 rdf:type schema:DefinedTerm
144 N7350ecfd8a444a1286457ec8eaea3ae2 rdf:first sg:person.01040724241.02
145 rdf:rest Neeb33e1cc90249178d0add29edd5ded9
146 N7a8e5b7887e2497c91210e766ce7cc3c rdf:first sg:person.0661532307.68
147 rdf:rest N1753eb3e5cc44b8aa1b73460337646d7
148 N7d3e6bc1daf54049a1e62c10d7fde4d4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
149 schema:name Fishes
150 rdf:type schema:DefinedTerm
151 N7e3694658c5e41c49947c7da0d533aa4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
152 schema:name Gene Expression Profiling
153 rdf:type schema:DefinedTerm
154 N81578c45f74b4a5cb539e38da6b21182 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
155 schema:name Bacteria
156 rdf:type schema:DefinedTerm
157 N81c6f82ff0f4488d963ee550fee3c215 schema:name Center for Microbial Sciences,
158 Department of Biology,
159 rdf:type schema:Organization
160 N82548df553044af7a8b968dd7497f305 schema:name Department of Biology,
161 rdf:type schema:Organization
162 N82764b2888f24f7e8d8481a1a6b7f8c0 schema:name Department of Animal Sciences, and,
163 rdf:type schema:Organization
164 N82bb788b17d44c75bb2bcda4c5d794de schema:name pubmed_id
165 schema:value 18337718
166 rdf:type schema:PropertyValue
167 N85556f4bb0d94ccab82da7f29b5e0e19 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
168 schema:name Viruses
169 rdf:type schema:DefinedTerm
170 N879b7bc6d0164ed0b9221c90348dd85e rdf:first sg:person.01351411217.16
171 rdf:rest N7a8e5b7887e2497c91210e766ce7cc3c
172 N8e130827fbbe4c57a741fbb618a01460 rdf:first sg:person.0616303347.04
173 rdf:rest N879b7bc6d0164ed0b9221c90348dd85e
174 N903f3b2350ec49b59928c86714423f99 schema:volumeNumber 452
175 rdf:type schema:PublicationVolume
176 N942e330ec36446608e21ec160a93a393 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
177 schema:name Microbiology
178 rdf:type schema:DefinedTerm
179 N9b1d5eccb41847c9ab6c0d5d1659eee2 rdf:first sg:person.01362257306.84
180 rdf:rest N5c6d461e71e34da9a95f9d95e14b1d71
181 Na4db33027eb648629987a1ab7867ec97 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
182 schema:name Seawater
183 rdf:type schema:DefinedTerm
184 Na73d90e1541c418fa93b5af670fe95e4 rdf:first sg:person.01021612334.04
185 rdf:rest Nd091178b835e43459b1c9b927d8cc381
186 Naa923087482b4317a0d257469c8f4aa1 schema:name Department of Biology,
187 rdf:type schema:Organization
188 Naf2314f2790a43939c13f3cc649f681a schema:name Department of Biology,
189 rdf:type schema:Organization
190 Nb0b5cca0243f4e0d85ba4e112cdbf466 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
191 schema:name Animals
192 rdf:type schema:DefinedTerm
193 Nb1ee8f9d3b10400885a3957e08dc6f94 rdf:first sg:person.0617751441.06
194 rdf:rest N0861a70e06154612a240da871f804963
195 Nb43abed4dfcf41d6b22b9fa120d3ff2a schema:name Department of Biology,
196 rdf:type schema:Organization
197 Nb590bd00eec64ed9b15608df903c8bed rdf:first sg:person.01147435060.08
198 rdf:rest Nf8ec3d39d87c4a1785e3c5d57ad9a16b
199 Nc185d824ab8741bfbbcfdd4203148c0f rdf:first sg:person.01215610154.59
200 rdf:rest N2cff05d045fc4920b765b55891b5d6b6
201 Nc1bb7ffc652f4a0d8d32e5790b6675bd rdf:first sg:person.01062533764.12
202 rdf:rest N9b1d5eccb41847c9ab6c0d5d1659eee2
203 Ncd6126836c9a4b93bb9e789d398eb164 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
204 schema:name Anthozoa
205 rdf:type schema:DefinedTerm
206 Ncfd40a30a32a43bd8373311edd1e2ad2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
207 schema:name Archaea
208 rdf:type schema:DefinedTerm
209 Nd091178b835e43459b1c9b927d8cc381 rdf:first sg:person.014422704722.99
210 rdf:rest Nb1ee8f9d3b10400885a3957e08dc6f94
211 Nd33f725863c648baad22bf08803c1cac schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
212 schema:name Genome, Viral
213 rdf:type schema:DefinedTerm
214 Nd47538a7d9724288b8d0d5334ce11896 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
215 schema:name Genomics
216 rdf:type schema:DefinedTerm
217 Nd5203da475a94f73a579a834f168fa73 rdf:first sg:person.01004505617.97
218 rdf:rest N348dbd16568748289b6da060951258ac
219 Nda93eafac80b42e59b39f3b44b41f183 schema:issueNumber 7187
220 rdf:type schema:PublicationIssue
221 Neeb33e1cc90249178d0add29edd5ded9 rdf:first sg:person.01136331207.33
222 rdf:rest Nd5203da475a94f73a579a834f168fa73
223 Needb128b4e7049e78b0193df7ce8849d schema:name Department of Biology,
224 rdf:type schema:Organization
225 Nf8ec3d39d87c4a1785e3c5d57ad9a16b rdf:first sg:person.0707416220.12
226 rdf:rest N8e130827fbbe4c57a741fbb618a01460
227 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
228 schema:name Biological Sciences
229 rdf:type schema:DefinedTerm
230 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
231 schema:name Microbiology
232 rdf:type schema:DefinedTerm
233 sg:journal.1018957 schema:issn 0090-0028
234 1476-4687
235 schema:name Nature
236 rdf:type schema:Periodical
237 sg:person.01004505617.97 schema:affiliation N40a2a8b059b54e2aa0c4111e22a78c21
238 schema:familyName Hall
239 schema:givenName Dana
240 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004505617.97
241 rdf:type schema:Person
242 sg:person.01021303536.04 schema:affiliation https://www.grid.ac/institutes/grid.170693.a
243 schema:familyName Breitbart
244 schema:givenName Mya
245 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021303536.04
246 rdf:type schema:Person
247 sg:person.01021612334.04 schema:affiliation https://www.grid.ac/institutes/grid.187073.a
248 schema:familyName Olson
249 schema:givenName Robert
250 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021612334.04
251 rdf:type schema:Person
252 sg:person.01040724241.02 schema:affiliation https://www.grid.ac/institutes/grid.1014.4
253 schema:familyName Dinsdale
254 schema:givenName Elizabeth A.
255 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040724241.02
256 rdf:type schema:Person
257 sg:person.01044565341.40 schema:affiliation https://www.grid.ac/institutes/grid.170693.a
258 schema:familyName McDaniel
259 schema:givenName Lauren
260 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01044565341.40
261 rdf:type schema:Person
262 sg:person.01062533764.12 schema:affiliation N82764b2888f24f7e8d8481a1a6b7f8c0
263 schema:familyName Brulc
264 schema:givenName Jennifer M.
265 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01062533764.12
266 rdf:type schema:Person
267 sg:person.01070216007.87 schema:affiliation https://www.grid.ac/institutes/grid.263081.e
268 schema:familyName Angly
269 schema:givenName Florent
270 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01070216007.87
271 rdf:type schema:Person
272 sg:person.01136331207.33 schema:affiliation https://www.grid.ac/institutes/grid.187073.a
273 schema:familyName Edwards
274 schema:givenName Robert A.
275 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01136331207.33
276 rdf:type schema:Person
277 sg:person.01140156265.31 schema:affiliation https://www.grid.ac/institutes/grid.35403.31
278 schema:familyName White
279 schema:givenName Bryan A.
280 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01140156265.31
281 rdf:type schema:Person
282 sg:person.01147435060.08 schema:affiliation https://www.grid.ac/institutes/grid.133342.4
283 schema:familyName Swan
284 schema:givenName Brandon K.
285 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01147435060.08
286 rdf:type schema:Person
287 sg:person.01213406210.22 schema:affiliation https://www.grid.ac/institutes/grid.469946.0
288 schema:familyName Nelson
289 schema:givenName Karen E.
290 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213406210.22
291 rdf:type schema:Person
292 sg:person.01215610154.59 schema:affiliation https://www.grid.ac/institutes/grid.213876.9
293 schema:familyName Moran
294 schema:givenName Mary Ann
295 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01215610154.59
296 rdf:type schema:Person
297 sg:person.01227127141.38 schema:affiliation https://www.grid.ac/institutes/grid.418377.e
298 schema:familyName Nilsson
299 schema:givenName Christina
300 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01227127141.38
301 rdf:type schema:Person
302 sg:person.01313105165.66 schema:affiliation N11f4b59db49c4e888067016a3b64adae
303 schema:familyName Li
304 schema:givenName Linlin
305 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01313105165.66
306 rdf:type schema:Person
307 sg:person.013335137357.86 schema:affiliation https://www.grid.ac/institutes/grid.418377.e
308 schema:familyName Ruan
309 schema:givenName Yijun
310 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013335137357.86
311 rdf:type schema:Person
312 sg:person.01336527215.04 schema:affiliation Naa923087482b4317a0d257469c8f4aa1
313 schema:familyName Desnues
314 schema:givenName Christelle
315 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336527215.04
316 rdf:type schema:Person
317 sg:person.01351411217.16 schema:affiliation Naf2314f2790a43939c13f3cc649f681a
318 schema:familyName Thurber
319 schema:givenName Rebecca Vega
320 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01351411217.16
321 rdf:type schema:Person
322 sg:person.01362257306.84 schema:affiliation Nb43abed4dfcf41d6b22b9fa120d3ff2a
323 schema:familyName Furlan
324 schema:givenName Mike
325 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362257306.84
326 rdf:type schema:Person
327 sg:person.014422704722.99 schema:affiliation https://www.grid.ac/institutes/grid.170693.a
328 schema:familyName Paul
329 schema:givenName John
330 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014422704722.99
331 rdf:type schema:Person
332 sg:person.0606340210.26 schema:affiliation N81c6f82ff0f4488d963ee550fee3c215
333 schema:familyName Rohwer
334 schema:givenName Forest
335 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606340210.26
336 rdf:type schema:Person
337 sg:person.0616303347.04 schema:affiliation https://www.grid.ac/institutes/grid.133342.4
338 schema:familyName Valentine
339 schema:givenName David L.
340 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0616303347.04
341 rdf:type schema:Person
342 sg:person.0617751441.06 schema:affiliation https://www.grid.ac/institutes/grid.263081.e
343 schema:familyName Brito
344 schema:givenName Beltran Rodriguez
345 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617751441.06
346 rdf:type schema:Person
347 sg:person.0636653206.93 schema:affiliation N82548df553044af7a8b968dd7497f305
348 schema:familyName Haynes
349 schema:givenName Matthew
350 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0636653206.93
351 rdf:type schema:Person
352 sg:person.0661532307.68 schema:affiliation Needb128b4e7049e78b0193df7ce8849d
353 schema:familyName Wegley
354 schema:givenName Linda
355 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0661532307.68
356 rdf:type schema:Person
357 sg:person.0707416220.12 schema:affiliation https://www.grid.ac/institutes/grid.187073.a
358 schema:familyName Stevens
359 schema:givenName Rick
360 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707416220.12
361 rdf:type schema:Person
362 sg:pub.10.1038/424741a schema:sameAs https://app.dimensions.ai/details/publication/pub.1031785841
363 https://doi.org/10.1038/424741a
364 rdf:type schema:CreativeWork
365 sg:pub.10.1038/424741b schema:sameAs https://app.dimensions.ai/details/publication/pub.1022675734
366 https://doi.org/10.1038/424741b
367 rdf:type schema:CreativeWork
368 sg:pub.10.1038/4441022a schema:sameAs https://app.dimensions.ai/details/publication/pub.1018798093
369 https://doi.org/10.1038/4441022a
370 rdf:type schema:CreativeWork
371 sg:pub.10.1038/nature03959 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021574562
372 https://doi.org/10.1038/nature03959
373 rdf:type schema:CreativeWork
374 sg:pub.10.1038/nature04435 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000290333
375 https://doi.org/10.1038/nature04435
376 rdf:type schema:CreativeWork
377 sg:pub.10.1038/nrg1709 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017719492
378 https://doi.org/10.1038/nrg1709
379 rdf:type schema:CreativeWork
380 sg:pub.10.1038/nrm1524 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017946773
381 https://doi.org/10.1038/nrm1524
382 rdf:type schema:CreativeWork
383 sg:pub.10.1038/nrmicro1643 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003287226
384 https://doi.org/10.1038/nrmicro1643
385 rdf:type schema:CreativeWork
386 sg:pub.10.1186/1471-2105-9-386 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006083026
387 https://doi.org/10.1186/1471-2105-9-386
388 rdf:type schema:CreativeWork
389 sg:pub.10.1186/1471-2164-7-57 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020041008
390 https://doi.org/10.1186/1471-2164-7-57
391 rdf:type schema:CreativeWork
392 https://doi.org/10.1006/tpbi.2002.1590 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001743889
393 rdf:type schema:CreativeWork
394 https://doi.org/10.1016/j.aquaculture.2006.07.038 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036739528
395 rdf:type schema:CreativeWork
396 https://doi.org/10.1016/j.gde.2005.09.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025951592
397 rdf:type schema:CreativeWork
398 https://doi.org/10.1016/s0168-9525(01)02447-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043209720
399 rdf:type schema:CreativeWork
400 https://doi.org/10.1073/pnas.0611525104 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050913510
401 rdf:type schema:CreativeWork
402 https://doi.org/10.1073/pnas.202488399 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000518725
403 rdf:type schema:CreativeWork
404 https://doi.org/10.1073/pnas.96.5.2192 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027482683
405 rdf:type schema:CreativeWork
406 https://doi.org/10.1093/nar/gkh065 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029580198
407 rdf:type schema:CreativeWork
408 https://doi.org/10.1093/nar/gki866 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009961531
409 rdf:type schema:CreativeWork
410 https://doi.org/10.1093/nar/gkl889 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029901284
411 rdf:type schema:CreativeWork
412 https://doi.org/10.1111/j.1462-2920.2007.01383.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1023137141
413 rdf:type schema:CreativeWork
414 https://doi.org/10.1111/j.1471-8286.2007.01696.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1005400703
415 rdf:type schema:CreativeWork
416 https://doi.org/10.1126/science.1010716 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062442412
417 rdf:type schema:CreativeWork
418 https://doi.org/10.1126/science.1120250 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003341152
419 rdf:type schema:CreativeWork
420 https://doi.org/10.1126/science.1122050 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035993150
421 rdf:type schema:CreativeWork
422 https://doi.org/10.1128/aem.00358-07 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013422473
423 rdf:type schema:CreativeWork
424 https://doi.org/10.1128/aem.03006-05 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034568952
425 rdf:type schema:CreativeWork
426 https://doi.org/10.1128/aem.66.7.2943-2950.2000 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052724923
427 rdf:type schema:CreativeWork
428 https://doi.org/10.1128/aem.70.10.5842-5846.2004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047135912
429 rdf:type schema:CreativeWork
430 https://doi.org/10.1128/jb.00592-06 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028649303
431 rdf:type schema:CreativeWork
432 https://doi.org/10.1128/jb.185.20.6220-6223.2003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031906359
433 rdf:type schema:CreativeWork
434 https://doi.org/10.1371/journal.pbio.0040368 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008667169
435 rdf:type schema:CreativeWork
436 https://doi.org/10.1371/journal.pone.0001584 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050937455
437 rdf:type schema:CreativeWork
438 https://doi.org/10.2144/000112019 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069095203
439 rdf:type schema:CreativeWork
440 https://doi.org/10.2307/1542485 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069532635
441 rdf:type schema:CreativeWork
442 https://doi.org/10.4319/lo.2000.45.2.0408 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053428058
443 rdf:type schema:CreativeWork
444 https://www.grid.ac/institutes/grid.1014.4 schema:alternateName Flinders University
445 schema:name Department of Biology,
446 School of Biological Sciences, Flinders University, Adelaide, South Australia 5042, Australia
447 rdf:type schema:Organization
448 https://www.grid.ac/institutes/grid.133342.4 schema:alternateName University of California, Santa Barbara
449 schema:name Department of Earth Science, University of California Santa Barbara, Santa Barbara, California 93106, USA
450 rdf:type schema:Organization
451 https://www.grid.ac/institutes/grid.170693.a schema:alternateName University of South Florida
452 schema:name University of South Florida, College of Marine Science, 140 7th Avenue South, St Petersburg, Florida 33701, USA
453 rdf:type schema:Organization
454 https://www.grid.ac/institutes/grid.187073.a schema:alternateName Argonne National Laboratory
455 schema:name Center for Microbial Sciences,
456 Department of Biology,
457 Department of Computer Sciences, and,
458 Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
459 rdf:type schema:Organization
460 https://www.grid.ac/institutes/grid.213876.9 schema:alternateName University of Georgia
461 schema:name Department of Marine Sciences, University of Georgia, Athens, 30602 Georgia, USA
462 rdf:type schema:Organization
463 https://www.grid.ac/institutes/grid.263081.e schema:alternateName San Diego State University
464 schema:name Computational Science Research Centre, San Diego State University, San Diego, California 92182, USA
465 Department of Biology,
466 rdf:type schema:Organization
467 https://www.grid.ac/institutes/grid.35403.31 schema:alternateName University of Illinois at Urbana Champaign
468 schema:name Department of Animal Sciences, and,
469 The Institute for Genomic Biology, University of Illinois, Urbana, Illinois 61801, USA
470 rdf:type schema:Organization
471 https://www.grid.ac/institutes/grid.418377.e schema:alternateName Genome Institute of Singapore
472 schema:name Genome Institute of Singapore, 60 Biopolis Street, 02-01, Genome, Singapore 138672, Singapore
473 rdf:type schema:Organization
474 https://www.grid.ac/institutes/grid.469946.0 schema:alternateName J. Craig Venter Institute
475 schema:name The J. Craig Venter Institute, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
476 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...