Genome sequence of the Brown Norway rat yields insights into mammalian evolution View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2004-04

AUTHORS

Richard A. Gibbs, George M. Weinstock, Michael L. Metzker, Donna M. Muzny, Erica J. Sodergren, Steven Scherer, Graham Scott, David Steffen, Kim C. Worley, Paula E. Burch, Geoffrey Okwuonu, Sandra Hines, Lora Lewis, Christine DeRamo, Oliver Delgado, Shannon Dugan-Rocha, George Miner, Margaret Morgan, Alicia Hawes, Rachel Gill, Celera Robert A. Holt, Mark D. Adams, Peter G. Amanatides, Holly Baden-Tillson, Mary Barnstead, Soo Chin, Cheryl A. Evans, Steve Ferriera, Carl Fosler, Anna Glodek, Zhiping Gu, Don Jennings, Cheryl L. Kraft, Trixie Nguyen, Cynthia M. Pfannkoch, Cynthia Sitter, Granger G. Sutton, J. Craig Venter, Trevor Woodage, , , , Pieter J. de Jong, Kazutoyo Osoegawa, Baoli Zhu, Marco Marra, Jacqueline Schein, Ian Bosdet, Chris Fjell, Steven Jones, Martin Krzywinski, Carrie Mathewson, Asim Siddiqui, Natasja Wye, , Shaying Zhao, Claire M. Fraser, Jyoti Shetty, Sofiya Shatsman, Keita Geer, Yixin Chen, Sofyia Abramzon, William C. Nierman, Richard A. Gibbs, George M. Weinstock, Paul H. Havlak, Rui Chen, K. James Durbin, Amy Egan, Yanru Ren, Xing-Zhi Song, Bingshan Li, Yue Liu, Xiang Qin, Simon Cawley, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Jane Peterson, Mark Guyer, Adam Felsenfeld, Susan Old, Stephen Mockrin, Francis Collins

ABSTRACT

The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine and drug development, having made inestimable contributions to human health. We report here the genome sequence of the Brown Norway (BN) rat strain. The sequence represents a high-quality ‘draft’ covering over 90% of the genome. The BN rat sequence is the third complete mammalian genome to be deciphered, and three-way comparisons with the human and mouse genomes resolve details of mammalian evolution. This first comprehensive analysis includes genes and proteins and their relation to human disease, repeated sequences, comparative genome-wide studies of mammalian orthologous chromosomal regions and rearrangement breakpoints, reconstruction of ancestral karyotypes and the events leading to existing species, rates of variation, and lineage-specific and lineage-independent evolutionary events such as expansion of gene families, orthology relations and protein evolution. More... »

PAGES

493-521

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  • Journal

    TITLE

    Nature

    ISSUE

    6982

    VOLUME

    428

    Author Affiliations

  • Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, 77030, Houston, Texas, USA
  • Celera, 45 West Gude Drive, 20850, Rockville, Maryland, USA
  • Department of Genetics and the Center for Computational Genomics, Case Western Reserve University, School of Medicine, 10900 Euclid Avenue, 44106, Cleveland, Ohio, USA
  • DSM Pharmaceuticals Inc., 5900 NW Greenville Blvd, 27834, Greenville, North Carolina, USA
  • The Institute for Biological Energy Alternatives (IBEA), 1901 Research Blvd, 20850, Rockville, Maryland, USA
  • Intronn, Inc., 910 Clopper Road, South Building, 20878, Gaithersburg, Maryland, USA
  • The Center for the Advancement of Genomics (TCAG), 1901 Research Blvd, Suite 600, 20850, Rockville, Maryland, USA
  • Avalon Pharmaceuticals, 20358 SenecaMeadows Parkway, 20876, Germantown, Maryland, USA
  • Basic Immunology Branch, Division of Allergy, Immunology and Transplantation, National Institute of Allergy and Infectious Diseases (NIAID), NIH, DHHS, 6610 Rockledge Blvd, Room 3005, 20892-7612, Bethesda, Maryland, USA
  • DynPort Vaccine Company, LLC, 64 Thomas Jefferson Drive, 21702, Frederick, Maryland, USA
  • BACPAC Resources, Children's Hospital Oakland Research Institute, 747 52nd Street, 94609, Oakland, California, USA
  • British Columbia Cancer Agency, Canada's Michael Smith Genome Sciences Centre, 600 W 10th Avenue, V5Z 4E6, Vancouver, British Columbia, Canada
  • The Institute for Genomic Research, 9712 Medical Center Dr., 20850, Rockville, Maryland, USA
  • Affymetrix, 6550 Vallejo St, Suite 100, 94608, Emeryville, California, USA
  • US National Institutes of Health, National Human Genome Research Institute, 31 Center Drive, 20892, Bethesda, Maryland, USA
  • US National Institutes of Health, National Heart, Lung, and Blood Institute, 20892, Bethesda, Maryland, USA
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nature02426

    DOI

    http://dx.doi.org/10.1038/nature02426

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1048338096

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/15057822


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