Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2002-12

AUTHORS

Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, N Osato, R Saito, H Suzuki, I Yamanaka, H Kiyosawa, K Yagi, Y Tomaru, Y Hasegawa, A Nogami, C Schönbach, T Gojobori, R Baldarelli, D P Hill, C Bult, D A Hume, J Quackenbush, L M Schriml, A Kanapin, H Matsuda, S Batalov, K W Beisel, J A Blake, D Bradt, V Brusic, C Chothia, L E Corbani, S Cousins, E Dalla, T A Dragani, C F Fletcher, A Forrest, K S Frazer, T Gaasterland, M Gariboldi, C Gissi, A Godzik, J Gough, S Grimmond, S Gustincich, N Hirokawa, I J Jackson, E D Jarvis, A Kanai, H Kawaji, Y Kawasawa, R M Kedzierski, B L King, A Konagaya, I V Kurochkin, Y Lee, B Lenhard, P A Lyons, D R Maglott, L Maltais, L Marchionni, L McKenzie, H Miki, T Nagashima, K Numata, T Okido, W J Pavan, G Pertea, G Pesole, N Petrovsky, R Pillai, J U Pontius, D Qi, S Ramachandran, T Ravasi, J C Reed, D J Reed, J Reid, B Z Ring, M Ringwald, A Sandelin, C Schneider, C A M Semple, M Setou, K Shimada, R Sultana, Y Takenaka, M S Taylor, R D Teasdale, M Tomita, R Verardo, L Wagner, C Wahlestedt, Y Wang, Y Watanabe, C Wells, L G Wilming, A Wynshaw-Boris, M Yanagisawa, I Yang, L Yang, Z Yuan, M Zavolan, Y Zhu, A Zimmer, P Carninci, N Hayatsu, T Hirozane-Kishikawa, H Konno, M Nakamura, N Sakazume, K Sato, T Shiraki, K Waki, J Kawai, K Aizawa, T Arakawa, S Fukuda, A Hara, W Hashizume, K Imotani, Y Ishii, M Itoh, I Kagawa, A Miyazaki, K Sakai, D Sasaki, K Shibata, A Shinagawa, A Yasunishi, M Yoshino, R Waterston, E S Lander, J Rogers, E Birney, Y Hayashizaki

ABSTRACT

Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify all full-length mRNA transcripts from the mouse, and to ensure that each is represented in a physical collection of clones. Here we report the manual annotation of 60,770 full-length mouse complementary DNA sequences. These are clustered into 33,409 'transcriptional units', contributing 90.1% of a newly established mouse transcriptome database. Of these transcriptional units, 4,258 are new protein-coding and 11,665 are new non-coding messages, indicating that non-coding RNA is a major component of the transcriptome. 41% of all transcriptional units showed evidence of alternative splicing. In protein-coding transcripts, 79% of splice variations altered the protein product. Whole-transcriptome analyses resulted in the identification of 2,431 sense-antisense pairs. The present work, completely supported by physical clones, provides the most comprehensive survey of a mammalian transcriptome so far, and is a valuable resource for functional genomics. More... »

PAGES

563

Journal

TITLE

Nature

ISSUE

6915

VOLUME

420

Author Affiliations

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nature01266

    DOI

    http://dx.doi.org/10.1038/nature01266

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1045627219

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/12466851


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