Initial sequencing and comparative analysis of the mouse genome View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2002-12

AUTHORS

Asif T. Chinwalla, Lisa L. Cook, Kimberly D. Delehaunty, Ginger A. Fewell, Lucinda A. Fulton, Robert S. Fulton, Tina A. Graves, LaDeana W. Hillier, Elaine R. Mardis, John D. McPherson, Tracie L. Miner, William E. Nash, Joanne O. Nelson, Michael N. Nhan, Kymberlie H. Pepin, Craig S. Pohl, Tracy C. Ponce, Brian Schultz, Johanna Thompson, Evanne Trevaskis, Robert H. Waterston, Michael C. Wendl, Richard K. Wilson, Shiaw-Pyng Yang, Peter An, Eric Berry, Bruce Birren, Toby Bloom, Daniel G. Brown, Jonathan Butler, Mark Daly, Robert David, Justin Deri, Sheila Dodge, Karen Foley, Diane Gage, Sante Gnerre, Timothy Holzer, David B. Jaffe, Michael Kamal, Elinor K. Karlsson, Cristyn Kells, Andrew Kirby, Edward J. Kulbokas, Eric S. Lander, Tom Landers, J. P. Leger, Rosie Levine, Kerstin Lindblad-Toh, Evan Mauceli, John H. Mayer, Megan McCarthy, Jim Meldrim, Jim Meldrim, Jill P. Mesirov, Robert Nicol, Chad Nusbaum, Steven Seaman, Ted Sharpe, Andrew Sheridan, Jonathan B. Singer, Ralph Santos, Brian Spencer, Nicole Stange-Thomann, Jade P. Vinson, Claire M. Wade, Jamey Wierzbowski, Dudley Wyman, Michael C. Zody, Ewan Birney, Nick Goldman, Arkadiusz Kasprzyk, Emmanuel Mongin, Alistair G. Rust, Guy Slater, Arne Stabenau, Abel Ureta-Vidal, Simon Whelan, Rachel Ainscough, John Attwood, Jonathon Bailey, Karen Barlow, Stephan Beck, John Burton, Michele Clamp, Christopher Clee, Alan Coulson, James Cuff, Val Curwen, Tim Cutts, Joy Davies, Eduardo Eyras, Darren Grafham, Simon Gregory, Tim Hubbard, Adrienne Hunt, Matthew Jones, Ann Joy, Steven Leonard, Christine Lloyd, Lucy Matthews, Stuart McLaren, Kirsten McLay, Beverley Meredith, James C. Mullikin, Zemin Ning, Karen Oliver, Emma Overton-Larty, Robert Plumb, Simon Potter, Michael Quail, Jane Rogers, Carol Scott, Steve Searle, Ratna Shownkeen, Sarah Sims, Melanie Wall, Anthony P. West, David Willey, Sophie Williams, Josep F. Abril, Roderic Guigó, Genís Parra, Pankaj Agarwal, Richa Agarwala, Deanna M. Church, Wratko Hlavina, Donna R. Maglott, Victor Sapojnikov, Marina Alexandersson, Lior Pachter, Stylianos E. Antonarakis, Emmanouil T. Dermitzakis, Alexandre Reymond, Catherine Ucla, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela Hinrichs, Fan Hsu, Donna Karolchik, W. James Kent, Krishna M. Roskin, Matthias S. Schwartz, Charles Sugnet, Ryan J. Weber, Peer Bork, Ivica Letunic, Mikita Suyama, David Torrents, Evgeny M. Zdobnov, Marc Botcherby, Stephen D. Brown, Robert D. Campbell, Ian Jackson, Nicolas Bray, Olivier Couronne, Inna Dubchak, Alex Poliakov, Edward M. Rubin, Michael R. Brent, Paul Flicek, Evan Keibler, Ian Korf, S. Batalov, Carol Bult, Wayne N. Frankel, Piero Carninci, Yoshihide Hayashizaki, Jun Kawai, Yasushi Okazaki, Simon Cawley, David Kulp, Raymond Wheeler, Francesca Chiaromonte, Francis S. Collins, Adam Felsenfeld, Mark Guyer, Jane Peterson, Kris Wetterstrand, Richard R. Copley, Richard Mott, Colin Dewey, Nicholas J. Dickens, Richard D. Emes, Leo Goodstadt, Chris P. Ponting, Eitan Winter, Diane M. Dunn, Andrew C. von Niederhausern, Robert B. Weiss, Sean R. Eddy, L. Steven Johnson, Thomas A. Jones, Laura Elnitski, Diana L. Kolbe, Pallavi Eswara, Webb Miller, Michael J. O'Connor, Scott Schwartz, Richard A. Gibbs, Donna M. Muzny, Gustavo Glusman, Arian Smit, Eric D. Green, Ross C. Hardison, Shan Yang, David Haussler, Axin Hua, Bruce A. Roe, Raju S. Kucherlapati, Kate T. Montgomery, Jia Li, Ming Li, Susan Lucas, Bin Ma, W. Richard McCombie, Michael Morgan, Pavel Pevzner, Glenn Tesler, Jörg Schultz, Douglas R. Smith, John Tromp, Kim C. Worley, Eric S. Lander, Josep F. Abril, Pankaj Agarwal, Marina Alexandersson, Stylianos E. Antonarakis, Robert Baertsch, Eric Berry, Ewan Birney, Peer Bork, Nicolas Bray, Michael R. Brent, Daniel G. Brown, Jonathan Butler, Carol Bult, Francesca Chiaromonte, Asif T. Chinwalla, Deanna M. Church, Michele Clamp, Francis S. Collins, Richard R. Copley, Olivier Couronne, Simon Cawley, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Emmanouil T. Dermitzakis, Colin Dewey, Nicholas J. Dickens, Mark Diekhans, Inna Dubchak, Sean R. Eddy, Laura Elnitski, Richard D. Emes, Pallavi Eswara, Eduardo Eyras, Adam Felsenfeld, Paul Flicek, Wayne N. Frankel, Lucinda A. Fulton, Terrence S. Furey, Sante Gnerre, Gustavo Glusman, Nick Goldman, Leo Goodstadt, Eric D. Green, Simon Gregory, Roderic Guigó, Ross C. Hardison, David Haussler, LaDeana W. Hillier, Angela Hinrichs, Wratko Hlavina, Fan Hsu, Tim Hubbard, David B. Jaffe, Michael Kamal, Donna Karolchik, Elinor K. Karlsson, Arkadiusz Kasprzyk, Evan Keibler, W. James Kent, Andrew Kirby, Diana L. Kolbe, Ian Korf, Edward J. Kulbokas, David Kulp, Eric S. Lander, Ivica Letunic, Ming Li, Kerstin Lindblad-Toh, Bin Ma, Donna R. Maglott, Evan Mauceli, Jill P. Mesirov, Webb Miller, Richard Mott, James C. Mullikin, Zemin Ning, Lior Pachter, Genís Parra, Pavel Pevzner, Alex Poliakov, Chris P. Ponting, Simon Potter, Alexandre Reymond, Krishna M. Roskin, Victor Sapojnikov, Jörg Schultz, Matthias S. Schwartz, Scott Schwartz, Steve Searle, Jonathan B. Singer, Guy Slater, Arian Smit, Arne Stabenau, Charles Sugnet, Mikita Suyama, Glenn Tesler, David Torrents, John Tromp, Catherine Ucla, Jade P. Vinson, Claire M. Wade, Ryan J. Weber, Raymond Wheeler, Eitan Winter, Shiaw-Pyng Yang, Evgeny M. Zdobnov, Robert H. Waterston, Simon Whelan, Kim C. Worley, Michael C. Zody

ABSTRACT

The sequence of the mouse genome is a key informational tool for understanding the contents of the human genome and a key experimental tool for biomedical research. Here, we report the results of an international collaboration to produce a high-quality draft sequence of the mouse genome. We also present an initial comparative analysis of the mouse and human genomes, describing some of the insights that can be gleaned from the two sequences. We discuss topics including the analysis of the evolutionary forces shaping the size, structure and sequence of the genomes; the conservation of large-scale synteny across most of the genomes; the much lower extent of sequence orthology covering less than half of the genomes; the proportions of the genomes under selection; the number of protein-coding genes; the expansion of gene families related to reproduction and immunity; the evolution of proteins; and the identification of intraspecies polymorphism. More... »

PAGES

520-562

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  • Journal

    TITLE

    Nature

    ISSUE

    6915

    VOLUME

    420

    Author Affiliations

  • Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Avenue, Campus Box 8501, 63108, St Louis, Missouri, USA
  • Whitehead Institute/MIT Center for Genome Research, 320 Charles Street, 02141, Cambridge, Massachusetts, USA
  • School of Computer Science, University of Waterloo, N2L 3G1, Waterloo, Ontario, Canada
  • Department of Biology, Massachusetts Institute of Technology, 02138, Cambridge, Massachusetts, USA
  • European Bioinformatics Institute, Wellcome Trust Genome Campus, CB10 1SD, Cambridge, Hinxton, UK
  • Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, CB10 1SA, Cambridge, Hinxton, UK
  • Research Group in Biomedical Informatics, Institut Municipal d'Investigacio, Medica/Universitat Pompeu Fabra, Centre de Regulacio Genomica, Barcelona, Catalonia, Spain
  • Bioinformatics, GlaxoSmithKline, UW2230, 709 Swedeland Road, 19406, King of Prussia, Pennsylvania, USA
  • National Center for Biotechnology Information, National Institutes of Health, 20892, Bethesda, Maryland, USA
  • Department of Mathematics, University of California at Berkeley, 970 Evans Hall, 94720, Berkeley, California, USA
  • Division of Medical Genetics, University of Geneva Medical School, 1 rue Michel-Servet, CH-1211, Geneva, Switzerland
  • Center for Biomolecular Science and Engineering, University of California, 95064, Santa Cruz, California, USA
  • EMBL, Meyerhofstrasse 1, 69117, Heidelberg, Germany
  • UK MRC Mouse Sequencing Consortium, MRC Mammalian Genetics Unit, OX11 0RD, Harwell, UK
  • Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 84-171, 94720, Berkeley, California, USA
  • Department of Computer Science, Washington University, Box 1045, 63130, St Louis, Missouri, USA
  • The Jackson Laboratory, 600 Main Street, 04609, Bar Harbor, Maine, USA
  • Laboratory for Genome Exploration, RIKEN Genomic Sciences Center, Yokohama Institute, 1-7-22 Suchiro-cho, 230-0045, Tsurumi-ku, Yokohama, Kanagawa, Japan
  • Affymetrix Inc., 94608, Emeryville, California, USA
  • Departments of Statistics and Health Evaluation Sciences, The Pennsylvania State University, 16802, University Park, Pennsylvania, USA
  • National Human Genome Research Institute, National Institutes of Health, 31 Center Drive, Room 4B09, 20892, Bethesda, Maryland, USA
  • Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, OX3 7BN, Oxford, UK
  • Department of Electrical Engineering, University of California, Berkeley, 231 Cory Hall, 94720, Berkeley, California, USA
  • Department of Human Anatomy and Genetics, MRC Functional Genetics Unit, University of Oxford, South Parks Road, OX1 3QX, Oxford, UK
  • Department of Human Genetics, University of Utah, 84112, Salt Lake City, Utah, USA
  • Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, 63110, St Louis, Missouri, USA
  • Departments of Biochemistry and Molecular Biology and Computer Science and Engineering, The Pennsylvania State University, 16802, University Park, Pennsylvania, USA
  • Department of Computer Science and Engineering, The Pennsylvania State University, 16802, University Park, Pennsylvania, USA
  • Baylor College of Medicine, Human Genome Sequencing Center, One Baylor Plaza, MSC-226, 77030, Houston, Texas, USA
  • The Institute for Systems Biology, 1441 North 34th Street, 98103, Seattle, Washington, USA
  • National Human Genome Research Institute, National Institutes of Health, 50 South Drive, Building 50, Room 5523, 20892, Bethesda, Maryland, USA
  • Department of Biochemistry and Molecular Biology, The Pennsylvania State University, 16802, University Park, Pennsylvania, USA
  • Howard Hughes Medical Institute, University of California, 95064, Santa Cruz, California, USA
  • Department of Chemistry and Biochemistry, University of Oklahoma Advanced Center for Genome Technology, University of Oklahoma, 620 Parrington Oval, Room 311, 73019, Oklahoma, Norman, USA
  • Departments of Genetics and Medicine and Harvard-Partners Center for Genetics and Genomics, Harvard Medical School, 02115, Boston, Massachusetts, USA
  • Department of Statistics, The Pennsylvania State University, 16802, University Park, Pennsylvania, USA
  • Department of Computer Science, University of California, 93106, Santa Barbara, California, USA
  • US DOE Joint Genome Institute, 2800 Mitchell Drive, 94598, Walnut Creek, California, USA
  • Department of Computer Science, University of Western Ontario, N6A 5B7, London, Ontario, Canada
  • Cold Spring Harbor Laboratory, 1 Bungtown Road, PO Box 100, 11724, Cold Spring Harbor, New York, USA
  • Wellcome Trust, 183 Euston Road, NW1 2BE, London, UK
  • Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Drive, 92093-0114, La Jolla, California, USA
  • Max Planck Institute for Molecular Genetics, Ihnestrasse 73, 14195, Berlin, Germany
  • Genome Therapeutics Corporation, 100 Beaver Street, 02453, Waltham, Massachusetts, USA
  • Bioinformatics Solutions Inc., 145 Columbia Street W, N2L 3L2, Waterloo, Ontario, Canada
  • Department of Molecular and Human Genetics, Baylor College of Medicine, Mailstop BCM226, Room 1419.01, One Baylor Plaza, 77030, Houston, Texas, USA
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/nature01262

    DOI

    http://dx.doi.org/10.1038/nature01262

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1039854529

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/12466850


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