Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2015-05

AUTHORS

Marilyn C Cornelis, Enda M Byrne, Tõnu Esko, Michael A Nalls, Andrea Ganna, Nina Paynter, Keri L Monda, Najaf Amin, Krista Fischer, Frida Renstrom, Julius S Ngwa, Ville Huikari, Alana Cavadino, Ilja M Nolte, Alexander Teumer, Kai Yu, Pedro Marques-Vidal, Rajesh Rawal, Ani Manichaikul, Mary K Wojczynski, Jacqueline M Vink, Jing Hua Zhao, George Burlutsky, Jari Lahti, Vera Mikkilä, Rozenn N Lemaitre, Joel Eriksson, Solomon K Musani, Toshiko Tanaka, Frank Geller, Jian'an Luan, Jennie Hui, Reedik Mägi, Maria Dimitriou, Melissa E Garcia, Weang-Kee Ho, Margaret J Wright, Lynda M Rose, Patrik Ke Magnusson, Nancy L Pedersen, David Couper, Ben A Oostra, Albert Hofman, Mohammad Arfan Ikram, Henning W Tiemeier, Andre G Uitterlinden, Frank Ja van Rooij, Inês Barroso, Ingegerd Johansson, Luting Xue, Marika Kaakinen, Lili Milani, Chris Power, Harold Snieder, Ronald P Stolk, Sebastian E Baumeister, Reiner Biffar, Fangyi Gu, François Bastardot, Zoltán Kutalik, David R Jacobs, Nita G Forouhi, Evelin Mihailov, Lars Lind, Cecilia Lindgren, Karl Michaëlsson, Andrew Morris, Majken Jensen, Kay-Tee Khaw, Robert N Luben, Jie Jin Wang, Satu Männistö, Mia-Maria Perälä, Mika Kähönen, Terho Lehtimäki, Jorma Viikari, Dariush Mozaffarian, Kenneth Mukamal, Bruce M Psaty, Angela Döring, Andrew C Heath, Grant W Montgomery, Norbert Dahmen, Teresa Carithers, Katherine L Tucker, Luigi Ferrucci, Heather A Boyd, Mads Melbye, Jorien L Treur, Dan Mellström, Jouke Jan Hottenga, Inga Prokopenko, Anke Tönjes, Panos Deloukas, Stavroula Kanoni, Mattias Lorentzon, Denise K Houston, Yongmei Liu, John Danesh, Asif Rasheed, Marc A Mason, Alan B Zonderman, Lude Franke, Bruce S Kristal, Juha Karjalainen, Danielle R Reed, Harm-Jan Westra, Michele K Evans, Danish Saleheen, Tamara B Harris, George Dedoussis, Gary Curhan, Michael Stumvoll, John Beilby, Louis R Pasquale, Bjarke Feenstra, Stefania Bandinelli, Jose M Ordovas, Andrew T Chan, Ulrike Peters, Claes Ohlsson, Christian Gieger, Nicholas G Martin, Melanie Waldenberger, David S Siscovick, Olli Raitakari, Johan G Eriksson, Paul Mitchell, David J Hunter, Peter Kraft, Eric B Rimm, Dorret I Boomsma, Ingrid B Borecki, Ruth Jf Loos, Nicholas J Wareham, Peter Vollenweider, Neil Caporaso, Hans Jörgen Grabe, Marian L Neuhouser, Bruce Hr Wolffenbuttel, Frank B Hu, Elina Hyppönen, Marjo-Riitta Järvelin, L Adrienne Cupples, Paul W Franks, Paul M Ridker, Cornelia M van Duijn, Gerardo Heiss, Andres Metspalu, Kari E North, Erik Ingelsson, Jennifer A Nettleton, Rob M van Dam, Daniel I Chasman

ABSTRACT

Coffee, a major dietary source of caffeine, is among the most widely consumed beverages in the world and has received considerable attention regarding health risks and benefits. We conducted a genome-wide (GW) meta-analysis of predominately regular-type coffee consumption (cups per day) among up to 91,462 coffee consumers of European ancestry with top single-nucleotide polymorphisms (SNPs) followed-up in ~30 062 and 7964 coffee consumers of European and African-American ancestry, respectively. Studies from both stages were combined in a trans-ethnic meta-analysis. Confirmed loci were examined for putative functional and biological relevance. Eight loci, including six novel loci, met GW significance (log10Bayes factor (BF)>5.64) with per-allele effect sizes of 0.03-0.14 cups per day. Six are located in or near genes potentially involved in pharmacokinetics (ABCG2, AHR, POR and CYP1A2) and pharmacodynamics (BDNF and SLC6A4) of caffeine. Two map to GCKR and MLXIPL genes related to metabolic traits but lacking known roles in coffee consumption. Enhancer and promoter histone marks populate the regions of many confirmed loci and several potential regulatory SNPs are highly correlated with the lead SNP of each. SNP alleles near GCKR, MLXIPL, BDNF and CYP1A2 that were associated with higher coffee consumption have previously been associated with smoking initiation, higher adiposity and fasting insulin and glucose but lower blood pressure and favorable lipid, inflammatory and liver enzyme profiles (P<5 × 10(-8)).Our genetic findings among European and African-American adults reinforce the role of caffeine in mediating habitual coffee consumption and may point to molecular mechanisms underlying inter-individual variability in pharmacological and health effects of coffee. More... »

PAGES

647

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  • Journal

    TITLE

    Molecular Psychiatry

    ISSUE

    5

    VOLUME

    20

    Author Affiliations

  • Harvard University
  • University of Queensland
  • Broad Institute
  • National Institutes of Health
  • Karolinska Institute
  • University of North Carolina at Chapel Hill
  • Erasmus University Medical Center
  • University of Tartu
  • Lund University
  • Boston University
  • University of Oulu
  • University College London
  • University Medical Center Groningen
  • University of Greifswald
  • National Cancer Institute
  • Institute of Social and Preventive Medicine
  • Helmholtz Zentrum München
  • University of Virginia
  • Washington University in St. Louis
  • VU University Amsterdam
  • University of Cambridge
  • University of Sydney
  • Folkhälsans Forskningscentrum
  • Turku University Hospital
  • University of Washington
  • University of Gothenburg
  • University of Mississippi Medical Center
  • National Institute on Aging
  • Statens Serum Institut
  • University of Western Australia
  • Harokopio University
  • National Institute of Arthritis and Musculoskeletal and Skin Diseases
  • QIMR Berghofer Medical Research Institute
  • Umeå University
  • Imperial College London
  • University of Lausanne
  • Swiss Institute of Bioinformatics
  • University of Minnesota
  • Uppsala University
  • Wellcome Centre for Human Genetics
  • National Institute for Health and Welfare
  • Tampere University Hospital
  • University of Tampere
  • Beth Israel Deaconess Medical Center
  • Group Health Cooperative
  • Johannes Gutenberg University of Mainz
  • University of Mississippi
  • University of Massachusetts Lowell
  • Leipzig University
  • King Abdulaziz University
  • Queen Mary University of London
  • Wake Forest University
  • Center for Non-Communicable Diseases
  • Monell Chemical Senses Center
  • Massachusetts Eye and Ear Infirmary
  • Azienda Sanitaria di Firenze
  • Tufts University
  • Massachusetts General Hospital
  • Fred Hutchinson Cancer Research Center
  • Helsinki University Central Hospital
  • Icahn School of Medicine at Mount Sinai
  • South Australian Health and Medical Research Institute
  • Oulu University Hospital
  • Netherlands Consortium for Healthy Ageing
  • The University of Texas Health Science Center at Houston
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/mp.2014.107

    DOI

    http://dx.doi.org/10.1038/mp.2014.107

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1051856976

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/25288136


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