Ontology type: schema:ScholarlyArticle Open Access: True
2016-05
AUTHORSMorgan Cowan, Simeon Springer, Doreen Nguyen, Diana Taheri, Gunes Guner, Maria Angelica Mendoza Rodriguez, Yuxuan Wang, Isaac Kinde, Christopher J VandenBussche, Matthew T Olson, Isabela Cunha, Kazutoshi Fujita, Dilek Ertoy, Trinity J Bivalacqua, Kenneth Kinzler, Bert Vogelstein, George J Netto, Nickolas Papadopoulos
ABSTRACTTERT promoter mutations (TERT-mut) are detectable in the majority of urothelial carcinomas. The detection of TERT-mut in urine is under investigation as a potential urine-based molecular-screening assay for bladder cancer. A small but significant number of bladder carcinomas are pure squamous cell carcinoma. We sought to assess the incidence of TERT-mut in squamous cell carcinoma of the urinary bladder. A retrospective search of the institutional pathology archives yielded 15 cystectomy specimens performed for squamous cell carcinoma (2000-2014). Histologic slides were reviewed by a senior urologic pathologist to confirm the diagnosis and select a representative formalin-fixed paraffin-embedded tissue block for mutational analysis. All cases yielded adequate material for DNA analysis. Sequencing for TERT-mut was performed using previously described SafeSeq technique. We detected TERT-mut in 12/15 (80%) of bladder squamous cell carcinomas. TERT promoter mutations, commonly found in conventional urothelial carcinoma, are also highly prevalent in urinary bladder squamous cell carcinoma suggesting a common tumorigenesis and potential utility as a molecular urine-based-screening assay. More... »
PAGES511-515
http://scigraph.springernature.com/pub.10.1038/modpathol.2016.53
DOIhttp://dx.doi.org/10.1038/modpathol.2016.53
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1016090665
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/26965579
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1112",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Oncology and Carcinogenesis",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Aged",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Aged, 80 and over",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Carcinoma, Squamous Cell",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA Mutational Analysis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Female",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Male",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Middle Aged",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mutation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Promoter Regions, Genetic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Retrospective Studies",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Telomerase",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Urinary Bladder Neoplasms",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Department of Pathology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Cowan",
"givenName": "Morgan",
"id": "sg:person.0707462761.20",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707462761.20"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins Medicine",
"id": "https://www.grid.ac/institutes/grid.469474.c",
"name": [
"Department of Oncology, Johns Hopkins University, Baltimore, MD, USA.",
"The Ludwig Center for Cancer Genetics and Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Springer",
"givenName": "Simeon",
"id": "sg:person.01075362300.10",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01075362300.10"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Department of Pathology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Nguyen",
"givenName": "Doreen",
"id": "sg:person.01023711361.03",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01023711361.03"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Department of Pathology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Taheri",
"givenName": "Diana",
"id": "sg:person.0760756730.10",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0760756730.10"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Department of Pathology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Guner",
"givenName": "Gunes",
"id": "sg:person.0707603650.54",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707603650.54"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Department of Pathology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Rodriguez",
"givenName": "Maria Angelica Mendoza",
"id": "sg:person.015474547365.81",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015474547365.81"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins Medicine",
"id": "https://www.grid.ac/institutes/grid.469474.c",
"name": [
"The Ludwig Center for Cancer Genetics and Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Wang",
"givenName": "Yuxuan",
"id": "sg:person.013421766557.98",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013421766557.98"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins Medicine",
"id": "https://www.grid.ac/institutes/grid.469474.c",
"name": [
"The Ludwig Center for Cancer Genetics and Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Kinde",
"givenName": "Isaac",
"id": "sg:person.01023460537.67",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01023460537.67"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Department of Pathology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "VandenBussche",
"givenName": "Christopher J",
"id": "sg:person.0732460360.08",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0732460360.08"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Department of Pathology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Olson",
"givenName": "Matthew T",
"id": "sg:person.01205716712.18",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01205716712.18"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"AC Camargo Cancer Centre, Sao Paulo, Brazil."
],
"type": "Organization"
},
"familyName": "Cunha",
"givenName": "Isabela",
"id": "sg:person.01020456223.49",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01020456223.49"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Osaka University",
"id": "https://www.grid.ac/institutes/grid.136593.b",
"name": [
"Department of Urology, Osaka University, Osaka, Japan."
],
"type": "Organization"
},
"familyName": "Fujita",
"givenName": "Kazutoshi",
"id": "sg:person.0737701230.09",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0737701230.09"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Hacettepe University",
"id": "https://www.grid.ac/institutes/grid.14442.37",
"name": [
"Department of Pathology, Hacettepe University, Ankara, Turkey."
],
"type": "Organization"
},
"familyName": "Ertoy",
"givenName": "Dilek",
"id": "sg:person.0615753324.45",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0615753324.45"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Departments of Urology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Bivalacqua",
"givenName": "Trinity J",
"id": "sg:person.01255014142.04",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01255014142.04"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins Medicine",
"id": "https://www.grid.ac/institutes/grid.469474.c",
"name": [
"Department of Oncology, Johns Hopkins University, Baltimore, MD, USA.",
"The Ludwig Center for Cancer Genetics and Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Kinzler",
"givenName": "Kenneth",
"id": "sg:person.0620642630.54",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620642630.54"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins Medicine",
"id": "https://www.grid.ac/institutes/grid.469474.c",
"name": [
"Department of Oncology, Johns Hopkins University, Baltimore, MD, USA.",
"The Ludwig Center for Cancer Genetics and Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Vogelstein",
"givenName": "Bert",
"id": "sg:person.011173760757.54",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011173760757.54"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins University",
"id": "https://www.grid.ac/institutes/grid.21107.35",
"name": [
"Department of Pathology, Johns Hopkins University, Baltimore, MD, USA.",
"Departments of Urology, Johns Hopkins University, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Netto",
"givenName": "George J",
"id": "sg:person.0712550525.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0712550525.22"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Johns Hopkins Medicine",
"id": "https://www.grid.ac/institutes/grid.469474.c",
"name": [
"Department of Oncology, Johns Hopkins University, Baltimore, MD, USA.",
"The Ludwig Center for Cancer Genetics and Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, USA."
],
"type": "Organization"
},
"familyName": "Papadopoulos",
"givenName": "Nickolas",
"id": "sg:person.013623242142.34",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013623242142.34"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1016/j.eururo.2013.10.038",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000577592"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/modpathol.2013.167",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005042175",
"https://doi.org/10.1038/modpathol.2013.167"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1260200",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005583324"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ejca.2015.03.010",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008240499"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1303607110",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011930425"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1097/pas.0000000000000305",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012599782"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1097/pas.0000000000000305",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012599782"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.urology.2006.03.062",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019168565"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1080/00365590050509869",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019305116"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1158/0008-5472.can-13-2498",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023523845"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1105422108",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025253093"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.yexcr.2012.09.005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033764902"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.anndiagpath.2015.03.005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034062365"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.eururo.2013.08.052",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037133412"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1177/106689690501300203",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039469728"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1177/106689690501300203",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039469728"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/ijc.28633",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041656965"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/s13045-014-0047-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042786277",
"https://doi.org/10.1186/s13045-014-0047-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/s13045-014-0047-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042786277",
"https://doi.org/10.1186/s13045-014-0047-7"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1310522110",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052419983"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1586/era.12.98",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052863368"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1229259",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062467132"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1230062",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062467697"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1177/1756287211431976",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1064076960"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1177/1756287211431976",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1064076960"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1074746952",
"type": "CreativeWork"
}
],
"datePublished": "2016-05",
"datePublishedReg": "2016-05-01",
"description": "TERT promoter mutations (TERT-mut) are detectable in the majority of urothelial carcinomas. The detection of TERT-mut in urine is under investigation as a potential urine-based molecular-screening assay for bladder cancer. A small but significant number of bladder carcinomas are pure squamous cell carcinoma. We sought to assess the incidence of TERT-mut in squamous cell carcinoma of the urinary bladder. A retrospective search of the institutional pathology archives yielded 15 cystectomy specimens performed for squamous cell carcinoma (2000-2014). Histologic slides were reviewed by a senior urologic pathologist to confirm the diagnosis and select a representative formalin-fixed paraffin-embedded tissue block for mutational analysis. All cases yielded adequate material for DNA analysis. Sequencing for TERT-mut was performed using previously described SafeSeq technique. We detected TERT-mut in 12/15 (80%) of bladder squamous cell carcinomas. TERT promoter mutations, commonly found in conventional urothelial carcinoma, are also highly prevalent in urinary bladder squamous cell carcinoma suggesting a common tumorigenesis and potential utility as a molecular urine-based-screening assay.",
"genre": "research_article",
"id": "sg:pub.10.1038/modpathol.2016.53",
"inLanguage": [
"en"
],
"isAccessibleForFree": true,
"isFundedItemOf": [
{
"id": "sg:grant.2438791",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.2683729",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.2683830",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1098208",
"issn": [
"0893-3952",
"1530-0285"
],
"name": "Modern Pathology",
"type": "Periodical"
},
{
"issueNumber": "5",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "29"
}
],
"name": "High prevalence of TERT promoter mutations in primary squamous cell carcinoma of the urinary bladder",
"pagination": "511-515",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"4cab0a0f30fd8f7bff84770dd3b70fd53dfcb1b10a01426e97fb4aa9813d5630"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"26965579"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"8806605"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/modpathol.2016.53"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1016090665"
]
}
],
"sameAs": [
"https://doi.org/10.1038/modpathol.2016.53",
"https://app.dimensions.ai/details/publication/pub.1016090665"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T18:33",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8675_00000607.jsonl",
"type": "ScholarlyArticle",
"url": "http://www.nature.com/modpathol/journal/v29/n5/full/modpathol201653a.html"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/modpathol.2016.53'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/modpathol.2016.53'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/modpathol.2016.53'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/modpathol.2016.53'
This table displays all metadata directly associated to this object as RDF triples.
326 TRIPLES
21 PREDICATES
64 URIs
34 LITERALS
22 BLANK NODES