Ontology type: schema:ScholarlyArticle
2016-01-14
AUTHORSCarlos Rodríguez-Martín, Florencia Cidre, Ana Fernández-Teijeiro, Gema Gómez-Mariano, Leticia de la Vega, Patricia Ramos, Ángel Zaballos, Sara Monzón, Javier Alonso
ABSTRACTRetinoblastoma (RB, MIM 180200) is the paradigm of hereditary cancer. Individuals harboring a constitutional mutation in one allele of the RB1 gene have a high predisposition to develop RB. Here, we present the first case of familial RB caused by a de novo insertion of a full-length long interspersed element-1 (LINE-1) into intron 14 of the RB1 gene that caused a highly heterogeneous splicing pattern of RB1 mRNA. LINE-1 insertion was inferred by mRNA studies and full-length sequenced by massive parallel sequencing. Some of the aberrant mRNAs were produced by noncanonical acceptor splice sites, a new finding that up to date has not been described to occur upon LINE-1 retrotransposition. Our results clearly show that RNA-based strategies have the potential to detect disease-causing transposon insertions. It also confirms that the incorporation of new genetic approaches, such as massive parallel sequencing, contributes to characterize at the sequence level these unique and exceptional genetic alterations. More... »
PAGES463-466
http://scigraph.springernature.com/pub.10.1038/jhg.2015.173
DOIhttp://dx.doi.org/10.1038/jhg.2015.173
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1014843966
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/26763876
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Adult",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Alternative Splicing",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Computational Biology",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Exons",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genetic Loci",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Infant",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Introns",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Long Interspersed Nucleotide Elements",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Male",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mutagenesis, Insertional",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Retinoblastoma",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Retinoblastoma Protein",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Analysis, DNA",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain",
"id": "http://www.grid.ac/institutes/grid.512887.1",
"name": [
"Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain"
],
"type": "Organization"
},
"familyName": "Rodr\u00edguez-Mart\u00edn",
"givenName": "Carlos",
"id": "sg:person.0731017222.06",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0731017222.06"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain",
"id": "http://www.grid.ac/institutes/grid.512887.1",
"name": [
"Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain"
],
"type": "Organization"
},
"familyName": "Cidre",
"givenName": "Florencia",
"id": "sg:person.01300165503.06",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300165503.06"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Unidad de Gesti\u00f3n Cl\u00ednica Intercentros de Oncolog\u00eda Pedi\u00e1tricas, Hospitales Universitarios Virgen Macarena y Virgen del Roc\u00edo, National Reference Unit for Retinoblastoma, Sevilla, Spain",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Unidad de Gesti\u00f3n Cl\u00ednica Intercentros de Oncolog\u00eda Pedi\u00e1tricas, Hospitales Universitarios Virgen Macarena y Virgen del Roc\u00edo, National Reference Unit for Retinoblastoma, Sevilla, Spain"
],
"type": "Organization"
},
"familyName": "Fern\u00e1ndez-Teijeiro",
"givenName": "Ana",
"id": "sg:person.01107544573.34",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01107544573.34"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain",
"id": "http://www.grid.ac/institutes/grid.512887.1",
"name": [
"Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain"
],
"type": "Organization"
},
"familyName": "G\u00f3mez-Mariano",
"givenName": "Gema",
"id": "sg:person.01336240403.74",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336240403.74"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain",
"id": "http://www.grid.ac/institutes/grid.512887.1",
"name": [
"Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain"
],
"type": "Organization"
},
"familyName": "de la Vega",
"givenName": "Leticia",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain",
"id": "http://www.grid.ac/institutes/grid.512887.1",
"name": [
"Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain"
],
"type": "Organization"
},
"familyName": "Ramos",
"givenName": "Patricia",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Unidad de Gen\u00f3mica, Centro Nacional de Microbiolog\u00eda, Instituto de Salud Carlos III, Madrid, Spain",
"id": "http://www.grid.ac/institutes/grid.413448.e",
"name": [
"Unidad de Gen\u00f3mica, Centro Nacional de Microbiolog\u00eda, Instituto de Salud Carlos III, Madrid, Spain"
],
"type": "Organization"
},
"familyName": "Zaballos",
"givenName": "\u00c1ngel",
"id": "sg:person.01333720157.40",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01333720157.40"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Raras (CIBERER U758), Instituto de Salud Carlos III, Madrid, Spain",
"id": "http://www.grid.ac/institutes/grid.452372.5",
"name": [
"Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain",
"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Raras (CIBERER U758), Instituto de Salud Carlos III, Madrid, Spain"
],
"type": "Organization"
},
"familyName": "Monz\u00f3n",
"givenName": "Sara",
"id": "sg:person.01021230763.20",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021230763.20"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain",
"id": "http://www.grid.ac/institutes/grid.512887.1",
"name": [
"Unidad de Tumores S\u00f3lidos Infantiles, \u00c1rea de Gen\u00e9tica Humana, Instituto de Investigaci\u00f3n de Enfermedades Raras (IIER), Instituto de Salud Carlos III (ISCIII), Madrid, Spain"
],
"type": "Organization"
},
"familyName": "Alonso",
"givenName": "Javier",
"id": "sg:person.012571320022.50",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012571320022.50"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/978-1-4419-6448-9_21",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027327065",
"https://doi.org/10.1007/978-1-4419-6448-9_21"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12038-011-9062-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016442520",
"https://doi.org/10.1007/s12038-011-9062-9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12041-009-0069-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008166055",
"https://doi.org/10.1007/s12041-009-0069-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2156-6-53",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022501179",
"https://doi.org/10.1186/1471-2156-6-53"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.ejhg.5201787",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031611162",
"https://doi.org/10.1038/sj.ejhg.5201787"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-0-387-89072-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050655990",
"https://doi.org/10.1007/978-0-387-89072-2"
],
"type": "CreativeWork"
}
],
"datePublished": "2016-01-14",
"datePublishedReg": "2016-01-14",
"description": "Retinoblastoma (RB, MIM 180200) is the paradigm of hereditary cancer. Individuals harboring a constitutional mutation in one allele of the RB1 gene have a high predisposition to develop RB. Here, we present the first case of familial RB caused by a de novo insertion of a full-length long interspersed element-1 (LINE-1) into intron 14 of the RB1 gene that caused a highly heterogeneous splicing pattern of RB1 mRNA. LINE-1 insertion was inferred by mRNA studies and full-length sequenced by massive parallel sequencing. Some of the aberrant mRNAs were produced by noncanonical acceptor splice sites, a new finding that up to date has not been described to occur upon LINE-1 retrotransposition. Our results clearly show that RNA-based strategies have the potential to detect disease-causing transposon insertions. It also confirms that the incorporation of new genetic approaches, such as massive parallel sequencing, contributes to characterize at the sequence level these unique and exceptional genetic alterations.",
"genre": "article",
"id": "sg:pub.10.1038/jhg.2015.173",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1294984",
"issn": [
"1434-5161",
"1435-232X"
],
"name": "Journal of Human Genetics",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "5",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "61"
}
],
"keywords": [
"LINE-1 insertions",
"massive parallel sequencing",
"parallel sequencing",
"RB1 gene",
"new genetic approaches",
"LINE-1 retrotransposition",
"acceptor splice site",
"aberrant mRNAs",
"mRNA splicing",
"splicing patterns",
"transposon insertion",
"genetic approaches",
"novo insertion",
"splice site",
"element 1",
"genes",
"genetic alterations",
"RB1 mRNA",
"intron 14",
"mRNA studies",
"sequencing",
"mRNA",
"familial retinoblastoma",
"constitutional mutations",
"familial Rb",
"retrotransposition",
"splicing",
"hereditary cancer",
"RNA",
"insertion",
"new findings",
"mutations",
"high predisposition",
"alleles",
"retinoblastoma",
"sequence",
"Rb",
"sites",
"alterations",
"predisposition",
"patterns",
"cancer",
"incorporation",
"date",
"individuals",
"potential",
"strategies",
"findings",
"study",
"results",
"approach",
"paradigm",
"first case",
"cases"
],
"name": "Familial retinoblastoma due to intronic LINE-1 insertion causes aberrant and noncanonical mRNA splicing of the RB1 gene",
"pagination": "463-466",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1014843966"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/jhg.2015.173"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"26763876"
]
}
],
"sameAs": [
"https://doi.org/10.1038/jhg.2015.173",
"https://app.dimensions.ai/details/publication/pub.1014843966"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-10T10:16",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220509/entities/gbq_results/article/article_691.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1038/jhg.2015.173"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/jhg.2015.173'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/jhg.2015.173'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/jhg.2015.173'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/jhg.2015.173'
This table displays all metadata directly associated to this object as RDF triples.
260 TRIPLES
22 PREDICATES
100 URIs
86 LITERALS
21 BLANK NODES