Ecological and genomic profiling of anaerobic methane-oxidizing archaea in a deep granitic environment View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2018-01

AUTHORS

Kohei Ino, Alex W Hernsdorf, Uta Konno, Mariko Kouduka, Katsunori Yanagawa, Shingo Kato, Michinari Sunamura, Akinari Hirota, Yoko S Togo, Kazumasa Ito, Akari Fukuda, Teruki Iwatsuki, Takashi Mizuno, Daisuke D Komatsu, Urumu Tsunogai, Toyoho Ishimura, Yuki Amano, Brian C Thomas, Jillian F Banfield, Yohey Suzuki

ABSTRACT

Recent single-gene-based surveys of deep continental aquifers demonstrated the widespread occurrence of archaea related to Candidatus Methanoperedens nitroreducens (ANME-2d) known to mediate anaerobic oxidation of methane (AOM). However, it is unclear whether ANME-2d mediates AOM in the deep continental biosphere. In this study, we found the dominance of ANME-2d in groundwater enriched in sulfate and methane from a 300-m deep underground borehole in granitic rock. A near-complete genome of one representative species of the ANME-2d obtained from the underground borehole has most of functional genes required for AOM and assimilatory sulfate reduction. The genome of the subsurface ANME-2d is different from those of other members of ANME-2d by lacking functional genes encoding nitrate and nitrite reductases and multiheme cytochromes. In addition, the subsurface ANME-2d genome contains a membrane-bound NiFe hydrogenase gene putatively involved in respiratory H2 oxidation, which is different from those of other methanotrophic archaea. Short-term incubation of microbial cells collected from the granitic groundwater with 13C-labeled methane also demonstrates that AOM is linked to microbial sulfate reduction. Given the prominence of granitic continental crust and sulfate and methane in terrestrial subsurface fluids, we conclude that AOM may be widespread in the deep continental biosphere. More... »

PAGES

31

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/ismej.2017.140

DOI

http://dx.doi.org/10.1038/ismej.2017.140

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1091505832

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/28885627


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