Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community View Full Text


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Article Info

DATE

2013-12-12

AUTHORS

Sheila Podell, Joanne B Emerson, Claudia M Jones, Juan A Ugalde, Sue Welch, Karla B Heidelberg, Jillian F Banfield, Eric E Allen

ABSTRACT

Microbial community succession was examined over a two-year period using spatially and temporally coordinated water chemistry measurements, metagenomic sequencing, phylogenetic binning and de novo metagenomic assembly in the extreme hypersaline habitat of Lake Tyrrell, Victoria, Australia. Relative abundances of Haloquadratum-related sequences were positively correlated with co-varying concentrations of potassium, magnesium and sulfate, but not sodium, chloride or calcium ions, while relative abundances of Halorubrum, Haloarcula, Halonotius, Halobaculum and Salinibacter-related sequences correlated negatively with Haloquadratum and these same ionic factors. Nanohaloarchaea and Halorhabdus-related sequence abundances were inversely correlated with each other, but not other taxonomic groups. These data, along with predicted gene functions from nearly-complete assembled population metagenomes, suggest different ecological phenotypes for Nanohaloarchaea and Halorhabdus-related strains versus other community members. Nucleotide percent G+C compositions were consistently lower in community metagenomic reads from summer versus winter samples. The same seasonal G+C trends were observed within taxonomically binned read subsets from each of seven different genus-level archaeal groups. Relative seasonal abundances were also linked to percent G+C for assembled population genomes. Together, these data suggest that extreme ionic conditions may exert selective pressure on archaeal populations at the level of genomic nucleotide composition, thus contributing to seasonal successional processes. Despite the unavailability of cultured representatives for most of the organisms identified in this study, effective coordination of physical and biological measurements has enabled discovery and quantification of unexpected taxon-specific, environmentally mediated factors influencing microbial community structure. More... »

PAGES

979-990

References to SciGraph publications

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  • 2002-08-24. Intracellular ion and organic solute concentrations of the extremely halophilic bacterium Salinibacter ruber in EXTREMOPHILES
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  • 2009-07-13. Search for a 'Tree of Life' in the thicket of the phylogenetic forest in BMC BIOLOGY
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  • 2008-03-18. Novelty and spatio–temporal heterogeneity in the bacterial diversity of hypersaline Lake Tebenquiche (Salar de Atacama) in EXTREMOPHILES
  • 2008-10-13. A simple, fast, and accurate method of phylogenomic inference in GENOME BIOLOGY
  • 1980-01. A square bacterium in NATURE
  • 2008-10-07. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm in BMC BIOINFORMATICS
  • 2013. Life at High Salt Concentrations in THE PROKARYOTES
  • 2013-07-14. Insights into the phylogeny and coding potential of microbial dark matter in NATURE
  • 2011-06-30. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities in THE ISME JOURNAL: MULTIDISCIPLINARY JOURNAL OF MICROBIAL ECOLOGY
  • 2011-12-02. Effects of different ion compositions on growth of obligately halophilic protozoan Halocafeteria seosinensis in EXTREMOPHILES
  • 2011-04-28. PhymmBL expanded: confidence scores, custom databases, parallelization and more in NATURE METHODS
  • 2011-10-10. Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria in BIOLOGY DIRECT
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/ismej.2013.221

    DOI

    http://dx.doi.org/10.1038/ismej.2013.221

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1000841169

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/24335829


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