UniFrac: an effective distance metric for microbial community comparison View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2010-09-09

AUTHORS

Catherine Lozupone, Manuel E Lladser, Dan Knights, Jesse Stombaugh, Rob Knight

ABSTRACT

N/A

PAGES

169-172

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/ismej.2010.133

DOI

http://dx.doi.org/10.1038/ismej.2010.133

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1042916034

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/20827291


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/05", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Environmental Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/10", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Technology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Animals", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Bacteria", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Data Interpretation, Statistical", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Ecology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Ecosystem", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Humans", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Software", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA", 
          "id": "http://www.grid.ac/institutes/grid.266190.a", 
          "name": [
            "Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lozupone", 
        "givenName": "Catherine", 
        "id": "sg:person.0672337357.81", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0672337357.81"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Applied Mathematics, University of Colorado, Boulder, CO, USA", 
          "id": "http://www.grid.ac/institutes/grid.266190.a", 
          "name": [
            "Department of Applied Mathematics, University of Colorado, Boulder, CO, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lladser", 
        "givenName": "Manuel E", 
        "id": "sg:person.0667441667.95", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0667441667.95"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA", 
          "id": "http://www.grid.ac/institutes/grid.266190.a", 
          "name": [
            "Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Knights", 
        "givenName": "Dan", 
        "id": "sg:person.01054701157.41", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01054701157.41"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA", 
          "id": "http://www.grid.ac/institutes/grid.266190.a", 
          "name": [
            "Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Stombaugh", 
        "givenName": "Jesse", 
        "id": "sg:person.01256275777.26", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01256275777.26"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Howard Hughes Medical Institute, Boulder, CO, USA", 
          "id": "http://www.grid.ac/institutes/grid.413575.1", 
          "name": [
            "Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA", 
            "Howard Hughes Medical Institute, Boulder, CO, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Knight", 
        "givenName": "Rob", 
        "id": "sg:person.016311745377.96", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016311745377.96"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/ismej.2008.5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029709848", 
          "https://doi.org/10.1038/ismej.2008.5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.f.303", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009032055", 
          "https://doi.org/10.1038/nmeth.f.303"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/ismej.2009.97", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024882111", 
          "https://doi.org/10.1038/ismej.2009.97"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2010-11-5-210", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042123396", 
          "https://doi.org/10.1186/gb-2010-11-5-210"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature07540", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030170002", 
          "https://doi.org/10.1038/nature07540"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2010-09-09", 
    "datePublishedReg": "2010-09-09", 
    "genre": "article", 
    "id": "sg:pub.10.1038/ismej.2010.133", 
    "inLanguage": "en", 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2681199", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1038436", 
        "issn": [
          "1751-7362", 
          "1751-7370"
        ], 
        "name": "The ISME Journal: Multidisciplinary Journal of Microbial Ecology", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "2", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "5"
      }
    ], 
    "keywords": [
      "community comparisons", 
      "comparison", 
      "microbial community comparison", 
      "metrics", 
      "distance metric", 
      "effective distance metric"
    ], 
    "name": "UniFrac: an effective distance metric for microbial community comparison", 
    "pagination": "169-172", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1042916034"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/ismej.2010.133"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "20827291"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/ismej.2010.133", 
      "https://app.dimensions.ai/details/publication/pub.1042916034"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2021-12-01T19:23", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20211201/entities/gbq_results/article/article_516.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1038/ismej.2010.133"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/ismej.2010.133'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/ismej.2010.133'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/ismej.2010.133'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/ismej.2010.133'


 

This table displays all metadata directly associated to this object as RDF triples.

159 TRIPLES      21 PREDICATES      45 URIs      31 LITERALS      15 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/ismej.2010.133 schema:about N001414cd21d049a8964bce8a8cbbaced
2 N17b3f14599d545f9b933994fcbe859c2
3 N241486c2bcc7460d9b8200713ece5b52
4 N3a977e0d497f41dca57469d92662bfda
5 N3d2e57a0d39349cfa144e77c278b41dd
6 N5ebeca31d5784b7587e1c277a7372d37
7 N6485c92f8ebf4549a049b20be0c30ec6
8 Nc15189a220d5417bad806fddb4405fc6
9 anzsrc-for:05
10 anzsrc-for:06
11 anzsrc-for:10
12 schema:author Na9c2c37d18cf4e3b89d2730afc935ee6
13 schema:citation sg:pub.10.1038/ismej.2008.5
14 sg:pub.10.1038/ismej.2009.97
15 sg:pub.10.1038/nature07540
16 sg:pub.10.1038/nmeth.f.303
17 sg:pub.10.1186/gb-2010-11-5-210
18 schema:datePublished 2010-09-09
19 schema:datePublishedReg 2010-09-09
20 schema:genre article
21 schema:inLanguage en
22 schema:isAccessibleForFree true
23 schema:isPartOf N02a1af1cb3b94b5e8b39f37b9514fb90
24 Nc2434b85813a4412a7f95f0f00f4f5f6
25 sg:journal.1038436
26 schema:keywords community comparisons
27 comparison
28 distance metric
29 effective distance metric
30 metrics
31 microbial community comparison
32 schema:name UniFrac: an effective distance metric for microbial community comparison
33 schema:pagination 169-172
34 schema:productId N09142e03f4514e2ba39242383ad93b7c
35 N37be67f960464c969d86cac600c4499c
36 N899f1c72979e43d6993226e382f88a15
37 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042916034
38 https://doi.org/10.1038/ismej.2010.133
39 schema:sdDatePublished 2021-12-01T19:23
40 schema:sdLicense https://scigraph.springernature.com/explorer/license/
41 schema:sdPublisher N59ecdca07ab14250be57f4d932a6cb2e
42 schema:url https://doi.org/10.1038/ismej.2010.133
43 sgo:license sg:explorer/license/
44 sgo:sdDataset articles
45 rdf:type schema:ScholarlyArticle
46 N001414cd21d049a8964bce8a8cbbaced schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
47 schema:name Software
48 rdf:type schema:DefinedTerm
49 N02a1af1cb3b94b5e8b39f37b9514fb90 schema:volumeNumber 5
50 rdf:type schema:PublicationVolume
51 N09142e03f4514e2ba39242383ad93b7c schema:name doi
52 schema:value 10.1038/ismej.2010.133
53 rdf:type schema:PropertyValue
54 N17b3f14599d545f9b933994fcbe859c2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
55 schema:name Bacteria
56 rdf:type schema:DefinedTerm
57 N241486c2bcc7460d9b8200713ece5b52 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
58 schema:name Data Interpretation, Statistical
59 rdf:type schema:DefinedTerm
60 N2d1c6b051f7e45a6953ee0c4ed2d85f7 rdf:first sg:person.01256275777.26
61 rdf:rest Neaa8fa9608344c579e115253f25c0481
62 N37be67f960464c969d86cac600c4499c schema:name dimensions_id
63 schema:value pub.1042916034
64 rdf:type schema:PropertyValue
65 N3a977e0d497f41dca57469d92662bfda schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
66 schema:name Phylogeny
67 rdf:type schema:DefinedTerm
68 N3d2e57a0d39349cfa144e77c278b41dd schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
69 schema:name Ecosystem
70 rdf:type schema:DefinedTerm
71 N59ecdca07ab14250be57f4d932a6cb2e schema:name Springer Nature - SN SciGraph project
72 rdf:type schema:Organization
73 N5ebeca31d5784b7587e1c277a7372d37 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
74 schema:name Animals
75 rdf:type schema:DefinedTerm
76 N6485c92f8ebf4549a049b20be0c30ec6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
77 schema:name Ecology
78 rdf:type schema:DefinedTerm
79 N899f1c72979e43d6993226e382f88a15 schema:name pubmed_id
80 schema:value 20827291
81 rdf:type schema:PropertyValue
82 Na9c2c37d18cf4e3b89d2730afc935ee6 rdf:first sg:person.0672337357.81
83 rdf:rest Nc3725beb343a4503960069ab7e30b088
84 Nc15189a220d5417bad806fddb4405fc6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
85 schema:name Humans
86 rdf:type schema:DefinedTerm
87 Nc2434b85813a4412a7f95f0f00f4f5f6 schema:issueNumber 2
88 rdf:type schema:PublicationIssue
89 Nc3725beb343a4503960069ab7e30b088 rdf:first sg:person.0667441667.95
90 rdf:rest Nc880d9e513f54f37a18eefda63b543e5
91 Nc880d9e513f54f37a18eefda63b543e5 rdf:first sg:person.01054701157.41
92 rdf:rest N2d1c6b051f7e45a6953ee0c4ed2d85f7
93 Neaa8fa9608344c579e115253f25c0481 rdf:first sg:person.016311745377.96
94 rdf:rest rdf:nil
95 anzsrc-for:05 schema:inDefinedTermSet anzsrc-for:
96 schema:name Environmental Sciences
97 rdf:type schema:DefinedTerm
98 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
99 schema:name Biological Sciences
100 rdf:type schema:DefinedTerm
101 anzsrc-for:10 schema:inDefinedTermSet anzsrc-for:
102 schema:name Technology
103 rdf:type schema:DefinedTerm
104 sg:grant.2681199 http://pending.schema.org/fundedItem sg:pub.10.1038/ismej.2010.133
105 rdf:type schema:MonetaryGrant
106 sg:journal.1038436 schema:issn 1751-7362
107 1751-7370
108 schema:name The ISME Journal: Multidisciplinary Journal of Microbial Ecology
109 schema:publisher Springer Nature
110 rdf:type schema:Periodical
111 sg:person.01054701157.41 schema:affiliation grid-institutes:grid.266190.a
112 schema:familyName Knights
113 schema:givenName Dan
114 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01054701157.41
115 rdf:type schema:Person
116 sg:person.01256275777.26 schema:affiliation grid-institutes:grid.266190.a
117 schema:familyName Stombaugh
118 schema:givenName Jesse
119 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01256275777.26
120 rdf:type schema:Person
121 sg:person.016311745377.96 schema:affiliation grid-institutes:grid.413575.1
122 schema:familyName Knight
123 schema:givenName Rob
124 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016311745377.96
125 rdf:type schema:Person
126 sg:person.0667441667.95 schema:affiliation grid-institutes:grid.266190.a
127 schema:familyName Lladser
128 schema:givenName Manuel E
129 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0667441667.95
130 rdf:type schema:Person
131 sg:person.0672337357.81 schema:affiliation grid-institutes:grid.266190.a
132 schema:familyName Lozupone
133 schema:givenName Catherine
134 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0672337357.81
135 rdf:type schema:Person
136 sg:pub.10.1038/ismej.2008.5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029709848
137 https://doi.org/10.1038/ismej.2008.5
138 rdf:type schema:CreativeWork
139 sg:pub.10.1038/ismej.2009.97 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024882111
140 https://doi.org/10.1038/ismej.2009.97
141 rdf:type schema:CreativeWork
142 sg:pub.10.1038/nature07540 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030170002
143 https://doi.org/10.1038/nature07540
144 rdf:type schema:CreativeWork
145 sg:pub.10.1038/nmeth.f.303 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009032055
146 https://doi.org/10.1038/nmeth.f.303
147 rdf:type schema:CreativeWork
148 sg:pub.10.1186/gb-2010-11-5-210 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042123396
149 https://doi.org/10.1186/gb-2010-11-5-210
150 rdf:type schema:CreativeWork
151 grid-institutes:grid.266190.a schema:alternateName Department of Applied Mathematics, University of Colorado, Boulder, CO, USA
152 Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA
153 schema:name Department of Applied Mathematics, University of Colorado, Boulder, CO, USA
154 Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA
155 rdf:type schema:Organization
156 grid-institutes:grid.413575.1 schema:alternateName Howard Hughes Medical Institute, Boulder, CO, USA
157 schema:name Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA
158 Howard Hughes Medical Institute, Boulder, CO, USA
159 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...