The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2010-01

AUTHORS

Irene Wagner-Döbler, Britta Ballhausen, Martine Berger, Thorsten Brinkhoff, Ina Buchholz, Boyke Bunk, Heribert Cypionka, Rolf Daniel, Thomas Drepper, Gunnar Gerdts, Sarah Hahnke, Cliff Han, Dieter Jahn, Daniela Kalhoefer, Hajnalka Kiss, Hans-Peter Klenk, Nikos Kyrpides, Wolfgang Liebl, Heiko Liesegang, Linda Meincke, Amrita Pati, Jörn Petersen, Tanja Piekarski, Claudia Pommerenke, Silke Pradella, Rüdiger Pukall, Ralf Rabus, Erko Stackebrandt, Sebastian Thole, Linda Thompson, Petra Tielen, Jürgen Tomasch, Mathias von Jan, Nittaya Wanphrut, Antje Wichels, Hajo Zech, Meinhard Simon

ABSTRACT

Dinoroseobacter shibae DFL12(T), a member of the globally important marine Roseobacter clade, comprises symbionts of cosmopolitan marine microalgae, including toxic dinoflagellates. Its annotated 4 417 868 bp genome sequence revealed a possible advantage of this symbiosis for the algal host. D. shibae DFL12(T) is able to synthesize the vitamins B(1) and B(12) for which its host is auxotrophic. Two pathways for the de novo synthesis of vitamin B(12) are present, one requiring oxygen and the other an oxygen-independent pathway. The de novo synthesis of vitamin B(12) was confirmed to be functional, and D. shibae DFL12(T) was shown to provide the growth-limiting vitamins B(1) and B(12) to its dinoflagellate host. The Roseobacter clade has been considered to comprise obligate aerobic bacteria. However, D. shibae DFL12(T) is able to grow anaerobically using the alternative electron acceptors nitrate and dimethylsulfoxide; it has the arginine deiminase survival fermentation pathway and a complex oxygen-dependent Fnr (fumarate and nitrate reduction) regulon. Many of these traits are shared with other members of the Roseobacter clade. D. shibae DFL12(T) has five plasmids, showing examples for vertical recruitment of chromosomal genes (thiC) and horizontal gene transfer (cox genes, gene cluster of 47 kb) possibly by conjugation (vir gene cluster). The long-range (80%) synteny between two sister plasmids provides insights into the emergence of novel plasmids. D. shibae DFL12(T) shows the most complex viral defense system of all Rhodobacterales sequenced to date. More... »

PAGES

ismej200994

References to SciGraph publications

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1038/ismej.2009.94

    DOI

    http://dx.doi.org/10.1038/ismej.2009.94

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1019427652

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/19741735


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