Ontology type: schema:ScholarlyArticle Open Access: True
2018-02-23
AUTHORSSejong Huh, Hwa-Ryung Song, Geuk-Rae Jeong, Hyejin Jang, Nan-Hee Seo, Ju-Hyun Lee, Ji-Yeun Yi, Byongsun Lee, Hyun Woo Choi, Jeong Tae Do, Jin-Su Kim, Soo-Hong Lee, Jae-Won Jung, Taekyu Lee, Jaekyung Shim, Myung-Kwan Han, Tae-Hee Lee
ABSTRACTThe molecular mechanism underlying the initiation of somatic cell reprogramming into induced pluripotent stem cells (iPSCs) has not been well described. Thus, we generated single-cell-derived clones by using a combination of drug-inducible vectors encoding transcription factors (Oct4, Sox2, Klf4 and Myc) and a single-cell expansion strategy. This system achieved a high reprogramming efficiency after metabolic and epigenetic remodeling. Functional analyses of the cloned cells revealed that extracellular signal-regulated kinase (ERK) signaling was downregulated at an early stage of reprogramming and that its inhibition was a driving force for iPSC formation. Among the reprogramming factors, Myc predominantly induced ERK suppression. ERK inhibition upregulated the conversion of somatic cells into iPSCs through concomitant suppression of serum response factor (SRF). Conversely, SRF activation suppressed the reprogramming induced by ERK inhibition and negatively regulated embryonic pluripotency by inducing differentiation via upregulation of immediate early genes, such as c-Jun, c-Fos and EGR1. These data reveal that suppression of the ERK-SRF axis is an initial molecular event that facilitates iPSC formation and may be a useful surrogate marker for cellular reprogramming. More... »
PAGESe448-e448
http://scigraph.springernature.com/pub.10.1038/emm.2017.279
DOIhttp://dx.doi.org/10.1038/emm.2017.279
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1101170387
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/29472703
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/03",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Chemical Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0304",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medicinal and Biomolecular Chemistry",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Biomarkers",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Line",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Transformation, Neoplastic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cells, Cultured",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cellular Reprogramming",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Extracellular Signal-Regulated MAP Kinases",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Fibroblasts",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Regulation, Developmental",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genes, myc",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Immunohistochemistry",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Induced Pluripotent Stem Cells",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Kruppel-Like Factor 4",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mice",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mice, Transgenic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phenotype",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phosphorylation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Serum Response Factor",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Signal Transduction",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Transcription Factors",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.263333.4",
"name": [
"Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Huh",
"givenName": "Sejong",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Microbiology, Chonbuk National University Medical School, Jeonju, Korea",
"id": "http://www.grid.ac/institutes/grid.411545.0",
"name": [
"Department of Microbiology, Chonbuk National University Medical School, Jeonju, Korea"
],
"type": "Organization"
},
"familyName": "Song",
"givenName": "Hwa-Ryung",
"id": "sg:person.015275516325.23",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015275516325.23"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.263333.4",
"name": [
"Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Jeong",
"givenName": "Geuk-Rae",
"id": "sg:person.015413111600.07",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015413111600.07"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.263333.4",
"name": [
"Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Jang",
"givenName": "Hyejin",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Microbiology, Chonbuk National University Medical School, Jeonju, Korea",
"id": "http://www.grid.ac/institutes/grid.411545.0",
"name": [
"Department of Microbiology, Chonbuk National University Medical School, Jeonju, Korea"
],
"type": "Organization"
},
"familyName": "Seo",
"givenName": "Nan-Hee",
"id": "sg:person.07505421000.25",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07505421000.25"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.263333.4",
"name": [
"Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Lee",
"givenName": "Ju-Hyun",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.263333.4",
"name": [
"Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Yi",
"givenName": "Ji-Yeun",
"id": "sg:person.01162762447.30",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01162762447.30"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.263333.4",
"name": [
"Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Lee",
"givenName": "Byongsun",
"id": "sg:person.011332771141.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011332771141.22"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Animal Biotechnology, College of Animal Bioscience and Technology, Konkuk University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.258676.8",
"name": [
"Department of Animal Biotechnology, College of Animal Bioscience and Technology, Konkuk University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Choi",
"givenName": "Hyun Woo",
"id": "sg:person.01174157766.31",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01174157766.31"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Animal Biotechnology, College of Animal Bioscience and Technology, Konkuk University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.258676.8",
"name": [
"Department of Animal Biotechnology, College of Animal Bioscience and Technology, Konkuk University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Do",
"givenName": "Jeong Tae",
"id": "sg:person.014040156057.06",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014040156057.06"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biomedical Science, CHA University, Sungnam, Korea",
"id": "http://www.grid.ac/institutes/grid.410886.3",
"name": [
"Department of Biomedical Science, CHA University, Sungnam, Korea"
],
"type": "Organization"
},
"familyName": "Kim",
"givenName": "Jin-Su",
"id": "sg:person.01304163056.09",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01304163056.09"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biomedical Science, CHA University, Sungnam, Korea",
"id": "http://www.grid.ac/institutes/grid.410886.3",
"name": [
"Department of Biomedical Science, CHA University, Sungnam, Korea"
],
"type": "Organization"
},
"familyName": "Lee",
"givenName": "Soo-Hong",
"id": "sg:person.01360233321.26",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01360233321.26"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Life science solutions, Thermo Fisher Scientific Inc., Seoul, Korea",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Life science solutions, Thermo Fisher Scientific Inc., Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Jung",
"givenName": "Jae-Won",
"id": "sg:person.0754742052.96",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0754742052.96"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Life science solutions, Thermo Fisher Scientific Inc., Seoul, Korea",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Life science solutions, Thermo Fisher Scientific Inc., Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Lee",
"givenName": "Taekyu",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.263333.4",
"name": [
"Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Shim",
"givenName": "Jaekyung",
"id": "sg:person.01251024472.52",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01251024472.52"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Microbiology, Chonbuk National University Medical School, Jeonju, Korea",
"id": "http://www.grid.ac/institutes/grid.411545.0",
"name": [
"Department of Microbiology, Chonbuk National University Medical School, Jeonju, Korea"
],
"type": "Organization"
},
"familyName": "Han",
"givenName": "Myung-Kwan",
"id": "sg:person.01027464710.48",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01027464710.48"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea",
"id": "http://www.grid.ac/institutes/grid.263333.4",
"name": [
"Department of Molecular Biology, Laboratory for Cancer & Stem Cell Biology, Plant Engineering Institute, Sejong University, Seoul, Korea"
],
"type": "Organization"
},
"familyName": "Lee",
"givenName": "Tae-Hee",
"id": "sg:person.01241407714.27",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01241407714.27"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/nature12587",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040499216",
"https://doi.org/10.1038/nature12587"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature08290",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045815818",
"https://doi.org/10.1038/nature08290"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1393",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029588621",
"https://doi.org/10.1038/nmeth.1393"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1410",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019464729",
"https://doi.org/10.1038/nmeth.1410"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/cr.2011.51",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049791045",
"https://doi.org/10.1038/cr.2011.51"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/292154a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017487986",
"https://doi.org/10.1038/292154a0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1593",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028183020",
"https://doi.org/10.1038/nmeth.1593"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg3473",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006015627",
"https://doi.org/10.1038/nrg3473"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncb2965",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005637082",
"https://doi.org/10.1038/ncb2965"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature05944",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019109862",
"https://doi.org/10.1038/nature05944"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.1632",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046760203",
"https://doi.org/10.1038/nbt.1632"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncb3193",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052650465",
"https://doi.org/10.1038/ncb3193"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt1418",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014318073",
"https://doi.org/10.1038/nbt1418"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature12749",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007961933",
"https://doi.org/10.1038/nature12749"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature08113",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018327234",
"https://doi.org/10.1038/nature08113"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt1374",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002744128",
"https://doi.org/10.1038/nbt1374"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature06968",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004707194",
"https://doi.org/10.1038/nature06968"
],
"type": "CreativeWork"
}
],
"datePublished": "2018-02-23",
"datePublishedReg": "2018-02-23",
"description": "The molecular mechanism underlying the initiation of somatic cell reprogramming into induced pluripotent stem cells (iPSCs) has not been well described. Thus, we generated single-cell-derived clones by using a combination of drug-inducible vectors encoding transcription factors (Oct4, Sox2, Klf4 and Myc) and a single-cell expansion strategy. This system achieved a high reprogramming efficiency after metabolic and epigenetic remodeling. Functional analyses of the cloned cells revealed that extracellular signal-regulated kinase (ERK) signaling was downregulated at an early stage of reprogramming and that its inhibition was a driving force for iPSC formation. Among the reprogramming factors, Myc predominantly induced ERK suppression. ERK inhibition upregulated the conversion of somatic cells into iPSCs through concomitant suppression of serum response factor (SRF). Conversely, SRF activation suppressed the reprogramming induced by ERK inhibition and negatively regulated embryonic pluripotency by inducing differentiation via upregulation of immediate early genes, such as c-Jun, c-Fos and EGR1. These data reveal that suppression of the ERK-SRF axis is an initial molecular event that facilitates iPSC formation and may be a useful surrogate marker for cellular reprogramming.",
"genre": "article",
"id": "sg:pub.10.1038/emm.2017.279",
"isAccessibleForFree": true,
"isPartOf": [
{
"id": "sg:journal.1085098",
"issn": [
"1226-3613",
"2092-6413"
],
"name": "Experimental & Molecular Medicine",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "2",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "50"
}
],
"keywords": [
"induced pluripotent stem cells",
"serum response factor",
"iPSC formation",
"somatic cells",
"ERK inhibition",
"somatic cell reprogramming",
"extracellular signal-regulated kinase (ERK) signaling",
"signal-regulated kinase signaling",
"higher reprogramming efficiency",
"initial molecular events",
"pluripotent stem cells",
"embryonic pluripotency",
"immediate early genes",
"cellular reprogramming",
"cell reprogramming",
"epigenetic remodeling",
"transcription factors",
"ERK suppression",
"kinase signaling",
"SRF activation",
"reprogramming efficiency",
"functional analysis",
"molecular mechanisms",
"molecular events",
"early genes",
"c-Jun",
"reprogramming",
"response factor",
"stem cells",
"c-fos",
"concomitant suppression",
"cells",
"pluripotency",
"inhibition",
"EGR1",
"genes",
"MYC",
"signaling",
"clones",
"suppression",
"differentiation",
"upregulation",
"early stages",
"remodeling",
"activation",
"formation",
"markers",
"factors",
"mechanism",
"initiation",
"vector",
"stage",
"events",
"expansion strategy",
"analysis",
"axis",
"conversion",
"combination",
"strategies",
"useful surrogate marker",
"data",
"system",
"efficiency",
"surrogate marker",
"force"
],
"name": "Suppression of the ERK\u2013SRF axis facilitates somatic cell reprogramming",
"pagination": "e448-e448",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1101170387"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1038/emm.2017.279"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"29472703"
]
}
],
"sameAs": [
"https://doi.org/10.1038/emm.2017.279",
"https://app.dimensions.ai/details/publication/pub.1101170387"
],
"sdDataset": "articles",
"sdDatePublished": "2022-08-04T17:07",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_771.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1038/emm.2017.279"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/emm.2017.279'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/emm.2017.279'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/emm.2017.279'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/emm.2017.279'
This table displays all metadata directly associated to this object as RDF triples.
394 TRIPLES
21 PREDICATES
127 URIs
102 LITERALS
27 BLANK NODES