High diversity of picornaviruses in rats from different continents revealed by deep sequencing View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-08

AUTHORS

Thomas Arn Hansen, Sarah Mollerup, Nam-Phuong Nguyen, Nicole E White, Megan Coghlan, David E Alquezar-Planas, Tejal Joshi, Randi Holm Jensen, Helena Fridholm, Kristín Rós Kjartansdóttir, Tobias Mourier, Tandy Warnow, Graham J Belsham, Michael Bunce, Eske Willerslev, Lars Peter Nielsen, Lasse Vinner, Anders Johannes Hansen

ABSTRACT

Outbreaks of zoonotic diseases in humans and livestock are not uncommon, and an important component in containment of such emerging viral diseases is rapid and reliable diagnostics. Such methods are often PCR-based and hence require the availability of sequence data from the pathogen. Rattus norvegicus (R. norvegicus) is a known reservoir for important zoonotic pathogens. Transmission may be direct via contact with the animal, for example, through exposure to its faecal matter, or indirectly mediated by arthropod vectors. Here we investigated the viral content in rat faecal matter (n=29) collected from two continents by analyzing 2.2 billion next-generation sequencing reads derived from both DNA and RNA. Among other virus families, we found sequences from members of the Picornaviridae to be abundant in the microbiome of all the samples. Here we describe the diversity of the picornavirus-like contigs including near-full-length genomes closely related to the Boone cardiovirus and Theiler's encephalomyelitis virus. From this study, we conclude that picornaviruses within R. norvegicus are more diverse than previously recognized. The virome of R. norvegicus should be investigated further to assess the full potential for zoonotic virus transmission. More... »

PAGES

e90

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/emi.2016.90

DOI

http://dx.doi.org/10.1038/emi.2016.90

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1006825139

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/27530749


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1108", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Medical Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Medical and Health Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Amino Acid Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Animals", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Denmark", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Disease Reservoirs", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Feces", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gastrointestinal Microbiome", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Variation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Viral", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "High-Throughput Nucleotide Sequencing", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Hong Kong", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Humans", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Malaysia", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Metagenomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Picornaviridae", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Picornaviridae Infections", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Viral", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Rats", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Viral Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Zoonoses", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hansen", 
        "givenName": "Thomas Arn", 
        "id": "sg:person.01063112666.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01063112666.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mollerup", 
        "givenName": "Sarah", 
        "id": "sg:person.01001433121.49", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01001433121.49"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Illinois at Urbana Champaign", 
          "id": "https://www.grid.ac/institutes/grid.35403.31", 
          "name": [
            "Carl R. Woese Institute for Genomic Biology, The University of Illinois at Urbana-Champaign, Urbana, IL 61801-2302, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nguyen", 
        "givenName": "Nam-Phuong", 
        "id": "sg:person.01124333421.30", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01124333421.30"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Curtin University", 
          "id": "https://www.grid.ac/institutes/grid.1032.0", 
          "name": [
            "Trace and Environmental DNA Lab and Australian Wildlife Forensic Services, Curtin University, Perth, Western Australia 6102, Australia."
          ], 
          "type": "Organization"
        }, 
        "familyName": "White", 
        "givenName": "Nicole E", 
        "id": "sg:person.01005106505.44", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01005106505.44"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Curtin University", 
          "id": "https://www.grid.ac/institutes/grid.1032.0", 
          "name": [
            "Trace and Environmental DNA Lab and Australian Wildlife Forensic Services, Curtin University, Perth, Western Australia 6102, Australia."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Coghlan", 
        "givenName": "Megan", 
        "id": "sg:person.01254140473.49", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01254140473.49"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Alquezar-Planas", 
        "givenName": "David E", 
        "id": "sg:person.01350434155.81", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01350434155.81"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Technical University of Denmark", 
          "id": "https://www.grid.ac/institutes/grid.5170.3", 
          "name": [
            "Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, DK-2800 Kongens Lyngby, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Joshi", 
        "givenName": "Tejal", 
        "id": "sg:person.01141127674.33", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01141127674.33"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Jensen", 
        "givenName": "Randi Holm", 
        "id": "sg:person.01014777466.86", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01014777466.86"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Statens Serum Institut", 
          "id": "https://www.grid.ac/institutes/grid.6203.7", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark.", 
            "Virus Research and Development, Statens Serum Institut, DK-2300 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Fridholm", 
        "givenName": "Helena", 
        "id": "sg:person.01270611446.03", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01270611446.03"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kjartansd\u00f3ttir", 
        "givenName": "Krist\u00edn R\u00f3s", 
        "id": "sg:person.01135207135.41", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01135207135.41"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mourier", 
        "givenName": "Tobias", 
        "id": "sg:person.0635153343.15", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0635153343.15"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Illinois at Urbana Champaign", 
          "id": "https://www.grid.ac/institutes/grid.35403.31", 
          "name": [
            "Departments of Bioengineering and Computer Science, The University of Illinois at Urbana-Champaign, Urbana, IL 61801-2302, USA."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Warnow", 
        "givenName": "Tandy", 
        "id": "sg:person.01267367051.18", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267367051.18"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Technical University of Denmark", 
          "id": "https://www.grid.ac/institutes/grid.5170.3", 
          "name": [
            "National Veterinary Institute, Technical University of Denmark, Lindholm, DK-4771 Kalvehave, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Belsham", 
        "givenName": "Graham J", 
        "id": "sg:person.01101350623.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01101350623.20"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Curtin University", 
          "id": "https://www.grid.ac/institutes/grid.1032.0", 
          "name": [
            "Trace and Environmental DNA Lab and Australian Wildlife Forensic Services, Curtin University, Perth, Western Australia 6102, Australia."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bunce", 
        "givenName": "Michael", 
        "id": "sg:person.01004536307.55", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004536307.55"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Willerslev", 
        "givenName": "Eske", 
        "id": "sg:person.0714231071.76", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0714231071.76"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Statens Serum Institut", 
          "id": "https://www.grid.ac/institutes/grid.6203.7", 
          "name": [
            "Department of Autoimmunology and Biomarkers, Statens Serum Institut, DK-2300 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nielsen", 
        "givenName": "Lars Peter", 
        "id": "sg:person.012156606432.48", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012156606432.48"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Vinner", 
        "givenName": "Lasse", 
        "id": "sg:person.01327715030.25", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01327715030.25"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Copenhagen", 
          "id": "https://www.grid.ac/institutes/grid.5254.6", 
          "name": [
            "Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hansen", 
        "givenName": "Anders Johannes", 
        "id": "sg:person.01200354112.60", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01200354112.60"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1371/journal.ppat.1002218", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000589056"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btu033", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000848409"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.meegid.2012.10.016", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001526889"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/29.14.2994", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002558558"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1099/vir.0.067199-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002753557"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1261/rna.029041.111", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005790779"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.1923", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006541515", 
          "https://doi.org/10.1038/nmeth.1923"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jvi.02301-08", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010830965"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0025776", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011098699"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkj157", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011156269"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3390/v8020053", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011833511"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11427-013-4519-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013012536", 
          "https://doi.org/10.1007/s11427-013-4519-8"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11427-013-4519-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013012536", 
          "https://doi.org/10.1007/s11427-013-4519-8"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btr381", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013175803"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0022-2836(05)80360-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013618994"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3201/eid1703.101410", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014110285"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1142/9789814366496_0024", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015458868"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkg006", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016135999"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/10408410902989837", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016171576"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkr859", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016911031"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkl938", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017189270"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1756-0500-5-337", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017672942", 
          "https://doi.org/10.1186/1756-0500-5-337"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1756-0500-5-337", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017672942", 
          "https://doi.org/10.1186/1756-0500-5-337"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/cmr.17.1.174-207.2004", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017917586"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/genomea.00134-13", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019664288"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2012-13-12-r122", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019755831", 
          "https://doi.org/10.1186/gb-2012-13-12-r122"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1751-0473-7-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022451981", 
          "https://doi.org/10.1186/1751-0473-7-1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2004-5-2-r12", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022585853", 
          "https://doi.org/10.1186/gb-2004-5-2-r12"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btp352", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023014918"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00705-013-1646-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024349775", 
          "https://doi.org/10.1007/s00705-013-1646-2"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1743-422x-5-159", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024686390", 
          "https://doi.org/10.1186/1743-422x-5-159"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pgen.1002657", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025316514"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1292/jvms.12-0568", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025767250"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1089/cmb.2014.0156", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025824739"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/10408360490497456", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025851776"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btq461", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025904619"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1755-0998.2010.02920.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028891006"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0070137", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029054282"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jvi.01244-13", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031053265"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.virusres.2013.08.002", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032813403"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.5969107", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034259503"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0168-9525(00)02024-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035021159"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0072787", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035580649"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1056/nejmoa030781", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035680398"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/mbio.01933-14", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036035984"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jcm.00174-07", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037251134"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/oxfordjournals.molbev.a025566", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038912861"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-9-474", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041611297", 
          "https://doi.org/10.1186/1471-2105-9-474"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3201/eid1712.111037", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043042952"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.virusres.2014.03.002", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1045118019"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3201/eid1204.051515", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046265138"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/25.17.3389", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047265454"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkr1065", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048457774"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btm091", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048513445"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.ppat.1003438", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049126353"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.prevetmed.2006.09.002", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052495243"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3201/eid1801.110725", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053645346"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1017/s0950268806007746", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053883484"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1051/vetres:2003044", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1057072116"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1089/vbz.2012.1195", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1059325362"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1099/vir.0.070029-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060399650"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.4269/ajtmh.1953.2.1117", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1075461575"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1076848406", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1082957629", 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2016-08", 
    "datePublishedReg": "2016-08-01", 
    "description": "Outbreaks of zoonotic diseases in humans and livestock are not uncommon, and an important component in containment of such emerging viral diseases is rapid and reliable diagnostics. Such methods are often PCR-based and hence require the availability of sequence data from the pathogen. Rattus norvegicus (R. norvegicus) is a known reservoir for important zoonotic pathogens. Transmission may be direct via contact with the animal, for example, through exposure to its faecal matter, or indirectly mediated by arthropod vectors. Here we investigated the viral content in rat faecal matter (n=29) collected from two continents by analyzing 2.2 billion next-generation sequencing reads derived from both DNA and RNA. Among other virus families, we found sequences from members of the Picornaviridae to be abundant in the microbiome of all the samples. Here we describe the diversity of the picornavirus-like contigs including near-full-length genomes closely related to the Boone cardiovirus and Theiler's encephalomyelitis virus. From this study, we conclude that picornaviruses within R. norvegicus are more diverse than previously recognized. The virome of R. norvegicus should be investigated further to assess the full potential for zoonotic virus transmission. ", 
    "genre": "research_article", 
    "id": "sg:pub.10.1038/emi.2016.90", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.4312583", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2421015", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1047596", 
        "issn": [
          "2222-1751"
        ], 
        "name": "Emerging Microbes & Infections", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "8", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "5"
      }
    ], 
    "name": "High diversity of picornaviruses in rats from different continents revealed by deep sequencing", 
    "pagination": "e90", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "2082e04de3aec95890ce3648f90b47ee4a7f0456f6b642fc4668620d139ce6af"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "27530749"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "101594885"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/emi.2016.90"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1006825139"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/emi.2016.90", 
      "https://app.dimensions.ai/details/publication/pub.1006825139"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T22:39", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8690_00000549.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://www.nature.com/emi/journal/v5/n8/full/emi201690a.html"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/emi.2016.90'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/emi.2016.90'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/emi.2016.90'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/emi.2016.90'


 

This table displays all metadata directly associated to this object as RDF triples.

480 TRIPLES      21 PREDICATES      111 URIs      41 LITERALS      29 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/emi.2016.90 schema:about N21ee08550fee45b69353ea79f3cbadb2
2 N37473dc9c5944d90b870f9ac9a8f0dd0
3 N44fc150e21374856b02797fc40296d56
4 N4a98f3848f9e46a198ce90c3ee25083c
5 N6f801bf22e0f4f958953b50857298916
6 N75c65098c4d0459b97ce8fd93b25a938
7 N7a1716055c3f4086b142f445ad6b9424
8 N8418179800b34b5e997d08ac55a41766
9 N923d435807524c9eb1c87b8a9fb6d25f
10 N969a87c3d0cc40f3bba6a38429fc138a
11 N9c92246cad6b4fb68f8c0d6ec99725dd
12 N9cc3b856afaf49e4b21b1f4b3c2ebba0
13 Nab2b731c7fe14a9bb1bf3838d3fcff15
14 Nb3a480e8a91344699146340c3da941b5
15 Nc548b767d5f84a7cb222cfde818e7442
16 Nc8b3541c7a0b4752b8c98afb01409f3d
17 Nd0d2e226a3694a2496e192c25d04c9c6
18 Nd15540ec472e41a58dae5c4ba805e676
19 Nfbb9b109baec4ccfb5229f719bab4232
20 Nff6b8961065f448f96338e6461bc71a4
21 anzsrc-for:11
22 anzsrc-for:1108
23 schema:author N0880a9b60129473cad3c1fc6fb8e8220
24 schema:citation sg:pub.10.1007/s00705-013-1646-2
25 sg:pub.10.1007/s11427-013-4519-8
26 sg:pub.10.1038/nmeth.1923
27 sg:pub.10.1186/1471-2105-9-474
28 sg:pub.10.1186/1743-422x-5-159
29 sg:pub.10.1186/1751-0473-7-1
30 sg:pub.10.1186/1756-0500-5-337
31 sg:pub.10.1186/gb-2004-5-2-r12
32 sg:pub.10.1186/gb-2012-13-12-r122
33 https://app.dimensions.ai/details/publication/pub.1076848406
34 https://app.dimensions.ai/details/publication/pub.1082957629
35 https://doi.org/10.1016/j.meegid.2012.10.016
36 https://doi.org/10.1016/j.prevetmed.2006.09.002
37 https://doi.org/10.1016/j.virusres.2013.08.002
38 https://doi.org/10.1016/j.virusres.2014.03.002
39 https://doi.org/10.1016/s0022-2836(05)80360-2
40 https://doi.org/10.1016/s0168-9525(00)02024-2
41 https://doi.org/10.1017/s0950268806007746
42 https://doi.org/10.1051/vetres:2003044
43 https://doi.org/10.1056/nejmoa030781
44 https://doi.org/10.1080/10408360490497456
45 https://doi.org/10.1080/10408410902989837
46 https://doi.org/10.1089/cmb.2014.0156
47 https://doi.org/10.1089/vbz.2012.1195
48 https://doi.org/10.1093/bioinformatics/btm091
49 https://doi.org/10.1093/bioinformatics/btp352
50 https://doi.org/10.1093/bioinformatics/btq461
51 https://doi.org/10.1093/bioinformatics/btr381
52 https://doi.org/10.1093/bioinformatics/btu033
53 https://doi.org/10.1093/nar/25.17.3389
54 https://doi.org/10.1093/nar/29.14.2994
55 https://doi.org/10.1093/nar/gkg006
56 https://doi.org/10.1093/nar/gkj157
57 https://doi.org/10.1093/nar/gkl938
58 https://doi.org/10.1093/nar/gkr1065
59 https://doi.org/10.1093/nar/gkr859
60 https://doi.org/10.1093/oxfordjournals.molbev.a025566
61 https://doi.org/10.1099/vir.0.067199-0
62 https://doi.org/10.1099/vir.0.070029-0
63 https://doi.org/10.1101/gr.5969107
64 https://doi.org/10.1111/j.1755-0998.2010.02920.x
65 https://doi.org/10.1128/cmr.17.1.174-207.2004
66 https://doi.org/10.1128/genomea.00134-13
67 https://doi.org/10.1128/jcm.00174-07
68 https://doi.org/10.1128/jvi.01244-13
69 https://doi.org/10.1128/jvi.02301-08
70 https://doi.org/10.1128/mbio.01933-14
71 https://doi.org/10.1142/9789814366496_0024
72 https://doi.org/10.1261/rna.029041.111
73 https://doi.org/10.1292/jvms.12-0568
74 https://doi.org/10.1371/journal.pgen.1002657
75 https://doi.org/10.1371/journal.pone.0025776
76 https://doi.org/10.1371/journal.pone.0070137
77 https://doi.org/10.1371/journal.pone.0072787
78 https://doi.org/10.1371/journal.ppat.1002218
79 https://doi.org/10.1371/journal.ppat.1003438
80 https://doi.org/10.3201/eid1204.051515
81 https://doi.org/10.3201/eid1703.101410
82 https://doi.org/10.3201/eid1712.111037
83 https://doi.org/10.3201/eid1801.110725
84 https://doi.org/10.3390/v8020053
85 https://doi.org/10.4269/ajtmh.1953.2.1117
86 schema:datePublished 2016-08
87 schema:datePublishedReg 2016-08-01
88 schema:description Outbreaks of zoonotic diseases in humans and livestock are not uncommon, and an important component in containment of such emerging viral diseases is rapid and reliable diagnostics. Such methods are often PCR-based and hence require the availability of sequence data from the pathogen. Rattus norvegicus (R. norvegicus) is a known reservoir for important zoonotic pathogens. Transmission may be direct via contact with the animal, for example, through exposure to its faecal matter, or indirectly mediated by arthropod vectors. Here we investigated the viral content in rat faecal matter (n=29) collected from two continents by analyzing 2.2 billion next-generation sequencing reads derived from both DNA and RNA. Among other virus families, we found sequences from members of the Picornaviridae to be abundant in the microbiome of all the samples. Here we describe the diversity of the picornavirus-like contigs including near-full-length genomes closely related to the Boone cardiovirus and Theiler's encephalomyelitis virus. From this study, we conclude that picornaviruses within R. norvegicus are more diverse than previously recognized. The virome of R. norvegicus should be investigated further to assess the full potential for zoonotic virus transmission.
89 schema:genre research_article
90 schema:inLanguage en
91 schema:isAccessibleForFree true
92 schema:isPartOf N0d5d22405eac40c589210449c1a286bd
93 N96f28fbe2f2a45169b7aa3498cae1346
94 sg:journal.1047596
95 schema:name High diversity of picornaviruses in rats from different continents revealed by deep sequencing
96 schema:pagination e90
97 schema:productId N41d84786d6684be3b02200818f4f9476
98 N6ba29e39de874ea0b8beb20094fab34a
99 Nd83adb11aec8439fb8f2b1f7282cbb95
100 Nef367004be02433b9c42ee06b65ba4bb
101 Nefbf33ba86bd4700b3849fbcbdce703f
102 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006825139
103 https://doi.org/10.1038/emi.2016.90
104 schema:sdDatePublished 2019-04-10T22:39
105 schema:sdLicense https://scigraph.springernature.com/explorer/license/
106 schema:sdPublisher Nc9d51567154b48d5842f7431448f138a
107 schema:url http://www.nature.com/emi/journal/v5/n8/full/emi201690a.html
108 sgo:license sg:explorer/license/
109 sgo:sdDataset articles
110 rdf:type schema:ScholarlyArticle
111 N01be3b1009f74ee2a4fca87769f66a32 rdf:first sg:person.01350434155.81
112 rdf:rest Nf2fb2fa73ccc42f8b97b314ae00d0af9
113 N0880a9b60129473cad3c1fc6fb8e8220 rdf:first sg:person.01063112666.04
114 rdf:rest N2ad0c9d18d2346e4a640762f401fd822
115 N0d5d22405eac40c589210449c1a286bd schema:issueNumber 8
116 rdf:type schema:PublicationIssue
117 N118e8d250f0c41c1a0fcf40856e79022 rdf:first sg:person.01327715030.25
118 rdf:rest Nb0319c2bb9c648b980f5a587499a4afc
119 N21ee08550fee45b69353ea79f3cbadb2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
120 schema:name Malaysia
121 rdf:type schema:DefinedTerm
122 N2ad0c9d18d2346e4a640762f401fd822 rdf:first sg:person.01001433121.49
123 rdf:rest N739b0443559a46d0ad4b40244cfcd5ae
124 N37473dc9c5944d90b870f9ac9a8f0dd0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
125 schema:name RNA, Viral
126 rdf:type schema:DefinedTerm
127 N41d84786d6684be3b02200818f4f9476 schema:name nlm_unique_id
128 schema:value 101594885
129 rdf:type schema:PropertyValue
130 N43854bc251d643afb60b9d2dea2f363b rdf:first sg:person.01135207135.41
131 rdf:rest N5a8297f72f4947e4ab8ad45dc1d04bc7
132 N44fc150e21374856b02797fc40296d56 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
133 schema:name High-Throughput Nucleotide Sequencing
134 rdf:type schema:DefinedTerm
135 N4a98f3848f9e46a198ce90c3ee25083c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
136 schema:name Feces
137 rdf:type schema:DefinedTerm
138 N5a8297f72f4947e4ab8ad45dc1d04bc7 rdf:first sg:person.0635153343.15
139 rdf:rest Nb6ae743f6bba41b5a127c04085eba907
140 N60af35b2b02a49ddb8b411d8fd7df25a rdf:first sg:person.01254140473.49
141 rdf:rest N01be3b1009f74ee2a4fca87769f66a32
142 N6ba29e39de874ea0b8beb20094fab34a schema:name readcube_id
143 schema:value 2082e04de3aec95890ce3648f90b47ee4a7f0456f6b642fc4668620d139ce6af
144 rdf:type schema:PropertyValue
145 N6f801bf22e0f4f958953b50857298916 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
146 schema:name Picornaviridae Infections
147 rdf:type schema:DefinedTerm
148 N739b0443559a46d0ad4b40244cfcd5ae rdf:first sg:person.01124333421.30
149 rdf:rest N8d67ca698dd74a51b868d2e6093cf4ce
150 N75c65098c4d0459b97ce8fd93b25a938 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
151 schema:name Hong Kong
152 rdf:type schema:DefinedTerm
153 N7a1716055c3f4086b142f445ad6b9424 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
154 schema:name Rats
155 rdf:type schema:DefinedTerm
156 N8418179800b34b5e997d08ac55a41766 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
157 schema:name Viral Proteins
158 rdf:type schema:DefinedTerm
159 N8d67ca698dd74a51b868d2e6093cf4ce rdf:first sg:person.01005106505.44
160 rdf:rest N60af35b2b02a49ddb8b411d8fd7df25a
161 N923d435807524c9eb1c87b8a9fb6d25f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
162 schema:name Denmark
163 rdf:type schema:DefinedTerm
164 N969a87c3d0cc40f3bba6a38429fc138a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
165 schema:name Gastrointestinal Microbiome
166 rdf:type schema:DefinedTerm
167 N96f28fbe2f2a45169b7aa3498cae1346 schema:volumeNumber 5
168 rdf:type schema:PublicationVolume
169 N9c92246cad6b4fb68f8c0d6ec99725dd schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
170 schema:name Amino Acid Sequence
171 rdf:type schema:DefinedTerm
172 N9cc3b856afaf49e4b21b1f4b3c2ebba0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
173 schema:name Animals
174 rdf:type schema:DefinedTerm
175 Nab2b731c7fe14a9bb1bf3838d3fcff15 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
176 schema:name Genetic Variation
177 rdf:type schema:DefinedTerm
178 Nb014edd7a136467aa879819130812fe6 rdf:first sg:person.01270611446.03
179 rdf:rest N43854bc251d643afb60b9d2dea2f363b
180 Nb0319c2bb9c648b980f5a587499a4afc rdf:first sg:person.01200354112.60
181 rdf:rest rdf:nil
182 Nb3a480e8a91344699146340c3da941b5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
183 schema:name Disease Reservoirs
184 rdf:type schema:DefinedTerm
185 Nb6ae743f6bba41b5a127c04085eba907 rdf:first sg:person.01267367051.18
186 rdf:rest Ne2570ba1c43f4a658bc72d7d80ee4bcc
187 Nc42571c5608c42cc9d452540b09d065a rdf:first sg:person.01004536307.55
188 rdf:rest Nd52e97cedecd4a6589afabd4dbf5e7a4
189 Nc548b767d5f84a7cb222cfde818e7442 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
190 schema:name Picornaviridae
191 rdf:type schema:DefinedTerm
192 Nc8b3541c7a0b4752b8c98afb01409f3d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
193 schema:name Genome, Viral
194 rdf:type schema:DefinedTerm
195 Nc9d51567154b48d5842f7431448f138a schema:name Springer Nature - SN SciGraph project
196 rdf:type schema:Organization
197 Ncc94c8de5ac742658315eb018324a48c rdf:first sg:person.01014777466.86
198 rdf:rest Nb014edd7a136467aa879819130812fe6
199 Nd0d2e226a3694a2496e192c25d04c9c6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
200 schema:name Phylogeny
201 rdf:type schema:DefinedTerm
202 Nd15540ec472e41a58dae5c4ba805e676 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
203 schema:name Metagenomics
204 rdf:type schema:DefinedTerm
205 Nd52e97cedecd4a6589afabd4dbf5e7a4 rdf:first sg:person.0714231071.76
206 rdf:rest Nf385352abc434c08bc328318b526ae26
207 Nd83adb11aec8439fb8f2b1f7282cbb95 schema:name doi
208 schema:value 10.1038/emi.2016.90
209 rdf:type schema:PropertyValue
210 Ne2570ba1c43f4a658bc72d7d80ee4bcc rdf:first sg:person.01101350623.20
211 rdf:rest Nc42571c5608c42cc9d452540b09d065a
212 Nef367004be02433b9c42ee06b65ba4bb schema:name pubmed_id
213 schema:value 27530749
214 rdf:type schema:PropertyValue
215 Nefbf33ba86bd4700b3849fbcbdce703f schema:name dimensions_id
216 schema:value pub.1006825139
217 rdf:type schema:PropertyValue
218 Nf2fb2fa73ccc42f8b97b314ae00d0af9 rdf:first sg:person.01141127674.33
219 rdf:rest Ncc94c8de5ac742658315eb018324a48c
220 Nf385352abc434c08bc328318b526ae26 rdf:first sg:person.012156606432.48
221 rdf:rest N118e8d250f0c41c1a0fcf40856e79022
222 Nfbb9b109baec4ccfb5229f719bab4232 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
223 schema:name Humans
224 rdf:type schema:DefinedTerm
225 Nff6b8961065f448f96338e6461bc71a4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
226 schema:name Zoonoses
227 rdf:type schema:DefinedTerm
228 anzsrc-for:11 schema:inDefinedTermSet anzsrc-for:
229 schema:name Medical and Health Sciences
230 rdf:type schema:DefinedTerm
231 anzsrc-for:1108 schema:inDefinedTermSet anzsrc-for:
232 schema:name Medical Microbiology
233 rdf:type schema:DefinedTerm
234 sg:grant.2421015 http://pending.schema.org/fundedItem sg:pub.10.1038/emi.2016.90
235 rdf:type schema:MonetaryGrant
236 sg:grant.4312583 http://pending.schema.org/fundedItem sg:pub.10.1038/emi.2016.90
237 rdf:type schema:MonetaryGrant
238 sg:journal.1047596 schema:issn 2222-1751
239 schema:name Emerging Microbes & Infections
240 rdf:type schema:Periodical
241 sg:person.01001433121.49 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
242 schema:familyName Mollerup
243 schema:givenName Sarah
244 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01001433121.49
245 rdf:type schema:Person
246 sg:person.01004536307.55 schema:affiliation https://www.grid.ac/institutes/grid.1032.0
247 schema:familyName Bunce
248 schema:givenName Michael
249 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004536307.55
250 rdf:type schema:Person
251 sg:person.01005106505.44 schema:affiliation https://www.grid.ac/institutes/grid.1032.0
252 schema:familyName White
253 schema:givenName Nicole E
254 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01005106505.44
255 rdf:type schema:Person
256 sg:person.01014777466.86 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
257 schema:familyName Jensen
258 schema:givenName Randi Holm
259 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01014777466.86
260 rdf:type schema:Person
261 sg:person.01063112666.04 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
262 schema:familyName Hansen
263 schema:givenName Thomas Arn
264 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01063112666.04
265 rdf:type schema:Person
266 sg:person.01101350623.20 schema:affiliation https://www.grid.ac/institutes/grid.5170.3
267 schema:familyName Belsham
268 schema:givenName Graham J
269 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01101350623.20
270 rdf:type schema:Person
271 sg:person.01124333421.30 schema:affiliation https://www.grid.ac/institutes/grid.35403.31
272 schema:familyName Nguyen
273 schema:givenName Nam-Phuong
274 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01124333421.30
275 rdf:type schema:Person
276 sg:person.01135207135.41 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
277 schema:familyName Kjartansdóttir
278 schema:givenName Kristín Rós
279 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01135207135.41
280 rdf:type schema:Person
281 sg:person.01141127674.33 schema:affiliation https://www.grid.ac/institutes/grid.5170.3
282 schema:familyName Joshi
283 schema:givenName Tejal
284 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01141127674.33
285 rdf:type schema:Person
286 sg:person.01200354112.60 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
287 schema:familyName Hansen
288 schema:givenName Anders Johannes
289 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01200354112.60
290 rdf:type schema:Person
291 sg:person.012156606432.48 schema:affiliation https://www.grid.ac/institutes/grid.6203.7
292 schema:familyName Nielsen
293 schema:givenName Lars Peter
294 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012156606432.48
295 rdf:type schema:Person
296 sg:person.01254140473.49 schema:affiliation https://www.grid.ac/institutes/grid.1032.0
297 schema:familyName Coghlan
298 schema:givenName Megan
299 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01254140473.49
300 rdf:type schema:Person
301 sg:person.01267367051.18 schema:affiliation https://www.grid.ac/institutes/grid.35403.31
302 schema:familyName Warnow
303 schema:givenName Tandy
304 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267367051.18
305 rdf:type schema:Person
306 sg:person.01270611446.03 schema:affiliation https://www.grid.ac/institutes/grid.6203.7
307 schema:familyName Fridholm
308 schema:givenName Helena
309 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01270611446.03
310 rdf:type schema:Person
311 sg:person.01327715030.25 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
312 schema:familyName Vinner
313 schema:givenName Lasse
314 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01327715030.25
315 rdf:type schema:Person
316 sg:person.01350434155.81 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
317 schema:familyName Alquezar-Planas
318 schema:givenName David E
319 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01350434155.81
320 rdf:type schema:Person
321 sg:person.0635153343.15 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
322 schema:familyName Mourier
323 schema:givenName Tobias
324 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0635153343.15
325 rdf:type schema:Person
326 sg:person.0714231071.76 schema:affiliation https://www.grid.ac/institutes/grid.5254.6
327 schema:familyName Willerslev
328 schema:givenName Eske
329 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0714231071.76
330 rdf:type schema:Person
331 sg:pub.10.1007/s00705-013-1646-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024349775
332 https://doi.org/10.1007/s00705-013-1646-2
333 rdf:type schema:CreativeWork
334 sg:pub.10.1007/s11427-013-4519-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013012536
335 https://doi.org/10.1007/s11427-013-4519-8
336 rdf:type schema:CreativeWork
337 sg:pub.10.1038/nmeth.1923 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006541515
338 https://doi.org/10.1038/nmeth.1923
339 rdf:type schema:CreativeWork
340 sg:pub.10.1186/1471-2105-9-474 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041611297
341 https://doi.org/10.1186/1471-2105-9-474
342 rdf:type schema:CreativeWork
343 sg:pub.10.1186/1743-422x-5-159 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024686390
344 https://doi.org/10.1186/1743-422x-5-159
345 rdf:type schema:CreativeWork
346 sg:pub.10.1186/1751-0473-7-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022451981
347 https://doi.org/10.1186/1751-0473-7-1
348 rdf:type schema:CreativeWork
349 sg:pub.10.1186/1756-0500-5-337 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017672942
350 https://doi.org/10.1186/1756-0500-5-337
351 rdf:type schema:CreativeWork
352 sg:pub.10.1186/gb-2004-5-2-r12 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022585853
353 https://doi.org/10.1186/gb-2004-5-2-r12
354 rdf:type schema:CreativeWork
355 sg:pub.10.1186/gb-2012-13-12-r122 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019755831
356 https://doi.org/10.1186/gb-2012-13-12-r122
357 rdf:type schema:CreativeWork
358 https://app.dimensions.ai/details/publication/pub.1076848406 schema:CreativeWork
359 https://app.dimensions.ai/details/publication/pub.1082957629 schema:CreativeWork
360 https://doi.org/10.1016/j.meegid.2012.10.016 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001526889
361 rdf:type schema:CreativeWork
362 https://doi.org/10.1016/j.prevetmed.2006.09.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052495243
363 rdf:type schema:CreativeWork
364 https://doi.org/10.1016/j.virusres.2013.08.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032813403
365 rdf:type schema:CreativeWork
366 https://doi.org/10.1016/j.virusres.2014.03.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045118019
367 rdf:type schema:CreativeWork
368 https://doi.org/10.1016/s0022-2836(05)80360-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013618994
369 rdf:type schema:CreativeWork
370 https://doi.org/10.1016/s0168-9525(00)02024-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035021159
371 rdf:type schema:CreativeWork
372 https://doi.org/10.1017/s0950268806007746 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053883484
373 rdf:type schema:CreativeWork
374 https://doi.org/10.1051/vetres:2003044 schema:sameAs https://app.dimensions.ai/details/publication/pub.1057072116
375 rdf:type schema:CreativeWork
376 https://doi.org/10.1056/nejmoa030781 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035680398
377 rdf:type schema:CreativeWork
378 https://doi.org/10.1080/10408360490497456 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025851776
379 rdf:type schema:CreativeWork
380 https://doi.org/10.1080/10408410902989837 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016171576
381 rdf:type schema:CreativeWork
382 https://doi.org/10.1089/cmb.2014.0156 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025824739
383 rdf:type schema:CreativeWork
384 https://doi.org/10.1089/vbz.2012.1195 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059325362
385 rdf:type schema:CreativeWork
386 https://doi.org/10.1093/bioinformatics/btm091 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048513445
387 rdf:type schema:CreativeWork
388 https://doi.org/10.1093/bioinformatics/btp352 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023014918
389 rdf:type schema:CreativeWork
390 https://doi.org/10.1093/bioinformatics/btq461 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025904619
391 rdf:type schema:CreativeWork
392 https://doi.org/10.1093/bioinformatics/btr381 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013175803
393 rdf:type schema:CreativeWork
394 https://doi.org/10.1093/bioinformatics/btu033 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000848409
395 rdf:type schema:CreativeWork
396 https://doi.org/10.1093/nar/25.17.3389 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047265454
397 rdf:type schema:CreativeWork
398 https://doi.org/10.1093/nar/29.14.2994 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002558558
399 rdf:type schema:CreativeWork
400 https://doi.org/10.1093/nar/gkg006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016135999
401 rdf:type schema:CreativeWork
402 https://doi.org/10.1093/nar/gkj157 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011156269
403 rdf:type schema:CreativeWork
404 https://doi.org/10.1093/nar/gkl938 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017189270
405 rdf:type schema:CreativeWork
406 https://doi.org/10.1093/nar/gkr1065 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048457774
407 rdf:type schema:CreativeWork
408 https://doi.org/10.1093/nar/gkr859 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016911031
409 rdf:type schema:CreativeWork
410 https://doi.org/10.1093/oxfordjournals.molbev.a025566 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038912861
411 rdf:type schema:CreativeWork
412 https://doi.org/10.1099/vir.0.067199-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002753557
413 rdf:type schema:CreativeWork
414 https://doi.org/10.1099/vir.0.070029-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060399650
415 rdf:type schema:CreativeWork
416 https://doi.org/10.1101/gr.5969107 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034259503
417 rdf:type schema:CreativeWork
418 https://doi.org/10.1111/j.1755-0998.2010.02920.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1028891006
419 rdf:type schema:CreativeWork
420 https://doi.org/10.1128/cmr.17.1.174-207.2004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017917586
421 rdf:type schema:CreativeWork
422 https://doi.org/10.1128/genomea.00134-13 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019664288
423 rdf:type schema:CreativeWork
424 https://doi.org/10.1128/jcm.00174-07 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037251134
425 rdf:type schema:CreativeWork
426 https://doi.org/10.1128/jvi.01244-13 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031053265
427 rdf:type schema:CreativeWork
428 https://doi.org/10.1128/jvi.02301-08 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010830965
429 rdf:type schema:CreativeWork
430 https://doi.org/10.1128/mbio.01933-14 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036035984
431 rdf:type schema:CreativeWork
432 https://doi.org/10.1142/9789814366496_0024 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015458868
433 rdf:type schema:CreativeWork
434 https://doi.org/10.1261/rna.029041.111 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005790779
435 rdf:type schema:CreativeWork
436 https://doi.org/10.1292/jvms.12-0568 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025767250
437 rdf:type schema:CreativeWork
438 https://doi.org/10.1371/journal.pgen.1002657 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025316514
439 rdf:type schema:CreativeWork
440 https://doi.org/10.1371/journal.pone.0025776 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011098699
441 rdf:type schema:CreativeWork
442 https://doi.org/10.1371/journal.pone.0070137 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029054282
443 rdf:type schema:CreativeWork
444 https://doi.org/10.1371/journal.pone.0072787 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035580649
445 rdf:type schema:CreativeWork
446 https://doi.org/10.1371/journal.ppat.1002218 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000589056
447 rdf:type schema:CreativeWork
448 https://doi.org/10.1371/journal.ppat.1003438 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049126353
449 rdf:type schema:CreativeWork
450 https://doi.org/10.3201/eid1204.051515 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046265138
451 rdf:type schema:CreativeWork
452 https://doi.org/10.3201/eid1703.101410 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014110285
453 rdf:type schema:CreativeWork
454 https://doi.org/10.3201/eid1712.111037 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043042952
455 rdf:type schema:CreativeWork
456 https://doi.org/10.3201/eid1801.110725 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053645346
457 rdf:type schema:CreativeWork
458 https://doi.org/10.3390/v8020053 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011833511
459 rdf:type schema:CreativeWork
460 https://doi.org/10.4269/ajtmh.1953.2.1117 schema:sameAs https://app.dimensions.ai/details/publication/pub.1075461575
461 rdf:type schema:CreativeWork
462 https://www.grid.ac/institutes/grid.1032.0 schema:alternateName Curtin University
463 schema:name Trace and Environmental DNA Lab and Australian Wildlife Forensic Services, Curtin University, Perth, Western Australia 6102, Australia.
464 rdf:type schema:Organization
465 https://www.grid.ac/institutes/grid.35403.31 schema:alternateName University of Illinois at Urbana Champaign
466 schema:name Carl R. Woese Institute for Genomic Biology, The University of Illinois at Urbana-Champaign, Urbana, IL 61801-2302, USA.
467 Departments of Bioengineering and Computer Science, The University of Illinois at Urbana-Champaign, Urbana, IL 61801-2302, USA.
468 rdf:type schema:Organization
469 https://www.grid.ac/institutes/grid.5170.3 schema:alternateName Technical University of Denmark
470 schema:name Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, DK-2800 Kongens Lyngby, Denmark.
471 National Veterinary Institute, Technical University of Denmark, Lindholm, DK-4771 Kalvehave, Denmark.
472 rdf:type schema:Organization
473 https://www.grid.ac/institutes/grid.5254.6 schema:alternateName University of Copenhagen
474 schema:name Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark.
475 rdf:type schema:Organization
476 https://www.grid.ac/institutes/grid.6203.7 schema:alternateName Statens Serum Institut
477 schema:name Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, DK-1350 Copenhagen, Denmark.
478 Department of Autoimmunology and Biomarkers, Statens Serum Institut, DK-2300 Copenhagen, Denmark.
479 Virus Research and Development, Statens Serum Institut, DK-2300 Copenhagen, Denmark.
480 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...