Atomic model of plant light-harvesting complex by electron crystallography View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1994-02

AUTHORS

Werner Kühlbrandt, Da Neng Wang, Yoshinori Fujiyoshi

ABSTRACT

The structure of the light-harvesting chlorophyll a/b–protein complex, an integral membrane protein, has been determined at 3.4 Å resolution by electron crystallography of two-dimensional crystals. Two of the three membrane-spanning α-helices are held together by ion pairs formed by charged residues that also serve as chlorophyll ligands. In the centre of the complex, chlorophyll a is in close contact with chlorophyll b for rapid energy transfer, and with two carotenoids that prevent the formation of toxic singlet oxygen. More... »

PAGES

614-621

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/367614a0

DOI

http://dx.doi.org/10.1038/367614a0

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1046683584

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/8107845


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/02", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Physical Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0299", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Other Physical Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biochemistry and Cell Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0607", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Plant Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Amino Acid Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chlorophyll", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Conserved Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Crystallography", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Light-Harvesting Protein Complexes", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Lutein", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Membrane Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Microscopy, Electron", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Models, Molecular", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Data", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Photosynthetic Reaction Center Complex Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Protein Structure, Secondary", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117, Heidelberg, Germany", 
          "id": "http://www.grid.ac/institutes/grid.4709.a", 
          "name": [
            "European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117, Heidelberg, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "K\u00fchlbrandt", 
        "givenName": "Werner", 
        "id": "sg:person.01040206467.78", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040206467.78"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117, Heidelberg, Germany", 
          "id": "http://www.grid.ac/institutes/grid.4709.a", 
          "name": [
            "European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117, Heidelberg, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wang", 
        "givenName": "Da Neng", 
        "id": "sg:person.015270564437.26", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015270564437.26"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117, Heidelberg, Germany", 
          "id": "http://www.grid.ac/institutes/grid.4709.a", 
          "name": [
            "European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117, Heidelberg, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Fujiyoshi", 
        "givenName": "Yoshinori", 
        "id": "sg:person.01077633456.74", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077633456.74"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/bf02411539", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049962291", 
          "https://doi.org/10.1007/bf02411539"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/318618a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020599081", 
          "https://doi.org/10.1038/318618a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf03166035", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028175545", 
          "https://doi.org/10.1007/bf03166035"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/350130a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004598521", 
          "https://doi.org/10.1038/350130a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/361326a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006800927", 
          "https://doi.org/10.1038/361326a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00014747", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004009003", 
          "https://doi.org/10.1007/bf00014747"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1994-02", 
    "datePublishedReg": "1994-02-01", 
    "description": "The structure of the light-harvesting chlorophyll a/b\u2013protein complex, an integral membrane protein, has been determined at 3.4 \u00c5 resolution by electron crystallography of two-dimensional crystals. Two of the three membrane-spanning \u03b1-helices are held together by ion pairs formed by charged residues that also serve as chlorophyll ligands. In the centre of the complex, chlorophyll a is in close contact with chlorophyll b for rapid energy transfer, and with two carotenoids that prevent the formation of toxic singlet oxygen.", 
    "genre": "article", 
    "id": "sg:pub.10.1038/367614a0", 
    "inLanguage": "en", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1018957", 
        "issn": [
          "0028-0836", 
          "1476-4687"
        ], 
        "name": "Nature", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "6464", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "367"
      }
    ], 
    "keywords": [
      "plant light-harvesting complex", 
      "light-harvesting chlorophyll", 
      "integral membrane proteins", 
      "electron crystallography", 
      "light-harvesting complex", 
      "chlorophyll ligands", 
      "protein complexes", 
      "membrane proteins", 
      "chlorophyll b", 
      "toxic singlet oxygen", 
      "two-dimensional crystals", 
      "atomic model", 
      "complexes", 
      "crystallography", 
      "protein", 
      "helix", 
      "chlorophyll", 
      "residues", 
      "carotenoids", 
      "singlet oxygen", 
      "close contact", 
      "energy transfer", 
      "rapid energy transfer", 
      "ligands", 
      "ion pairs", 
      "formation", 
      "pairs", 
      "structure", 
      "transfer", 
      "oxygen", 
      "contact", 
      "resolution", 
      "crystals", 
      "model", 
      "center"
    ], 
    "name": "Atomic model of plant light-harvesting complex by electron crystallography", 
    "pagination": "614-621", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1046683584"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/367614a0"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "8107845"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/367614a0", 
      "https://app.dimensions.ai/details/publication/pub.1046683584"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-01-01T18:06", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220101/entities/gbq_results/article/article_241.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1038/367614a0"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/367614a0'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/367614a0'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/367614a0'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/367614a0'


 

This table displays all metadata directly associated to this object as RDF triples.

195 TRIPLES      22 PREDICATES      83 URIs      66 LITERALS      19 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/367614a0 schema:about N13f3cee2ed1c4750be437c74835b51da
2 N24d9ba15d4224e769473531a763ace30
3 N37c65c1711c840bfb0d17e8c68ad52ea
4 N437f08171ad7495d83a9cd2ecb90e0d5
5 N5d85a9fee4f741b68c08252b58a4399a
6 N83c451a60a974b6fa1b46912cd46e5b6
7 N8618eb3af11c47099dbd617931790295
8 N8933d3f25bfd41d3a8ed79642a89b705
9 Nc20125ba8de74d869dc8176c17229b08
10 Nc687eebab42c4c3abf478232882c69c3
11 Ned7850f4a5c84e9cb4fbd2244e78c0ac
12 Nfbc6926f88764e418a1ba53a674d17e2
13 anzsrc-for:02
14 anzsrc-for:0299
15 anzsrc-for:06
16 anzsrc-for:0601
17 anzsrc-for:0607
18 schema:author Nbf8840d0c56341c5bda8848b0d6ac203
19 schema:citation sg:pub.10.1007/bf00014747
20 sg:pub.10.1007/bf02411539
21 sg:pub.10.1007/bf03166035
22 sg:pub.10.1038/318618a0
23 sg:pub.10.1038/350130a0
24 sg:pub.10.1038/361326a0
25 schema:datePublished 1994-02
26 schema:datePublishedReg 1994-02-01
27 schema:description The structure of the light-harvesting chlorophyll a/b–protein complex, an integral membrane protein, has been determined at 3.4 Å resolution by electron crystallography of two-dimensional crystals. Two of the three membrane-spanning α-helices are held together by ion pairs formed by charged residues that also serve as chlorophyll ligands. In the centre of the complex, chlorophyll a is in close contact with chlorophyll b for rapid energy transfer, and with two carotenoids that prevent the formation of toxic singlet oxygen.
28 schema:genre article
29 schema:inLanguage en
30 schema:isAccessibleForFree false
31 schema:isPartOf Nb8ffebeead38468aaa6e0573dd426f20
32 Ne8bff8b10b09436d9077a52bc77c871a
33 sg:journal.1018957
34 schema:keywords atomic model
35 carotenoids
36 center
37 chlorophyll
38 chlorophyll b
39 chlorophyll ligands
40 close contact
41 complexes
42 contact
43 crystallography
44 crystals
45 electron crystallography
46 energy transfer
47 formation
48 helix
49 integral membrane proteins
50 ion pairs
51 ligands
52 light-harvesting chlorophyll
53 light-harvesting complex
54 membrane proteins
55 model
56 oxygen
57 pairs
58 plant light-harvesting complex
59 protein
60 protein complexes
61 rapid energy transfer
62 residues
63 resolution
64 singlet oxygen
65 structure
66 toxic singlet oxygen
67 transfer
68 two-dimensional crystals
69 schema:name Atomic model of plant light-harvesting complex by electron crystallography
70 schema:pagination 614-621
71 schema:productId Nb5e2bb05cdd54bc4a298a4f51b83958d
72 Ndde0a45994ed45e3b8ed2d357bd3f90a
73 Nf6bbc324251e40c9b1d5ff20960d129c
74 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046683584
75 https://doi.org/10.1038/367614a0
76 schema:sdDatePublished 2022-01-01T18:06
77 schema:sdLicense https://scigraph.springernature.com/explorer/license/
78 schema:sdPublisher N201d782c4653459f81714315439538f9
79 schema:url https://doi.org/10.1038/367614a0
80 sgo:license sg:explorer/license/
81 sgo:sdDataset articles
82 rdf:type schema:ScholarlyArticle
83 N13f3cee2ed1c4750be437c74835b51da schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
84 schema:name Conserved Sequence
85 rdf:type schema:DefinedTerm
86 N1c3f186da9a34414b4087fc71aee0d4b rdf:first sg:person.01077633456.74
87 rdf:rest rdf:nil
88 N201d782c4653459f81714315439538f9 schema:name Springer Nature - SN SciGraph project
89 rdf:type schema:Organization
90 N24d9ba15d4224e769473531a763ace30 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
91 schema:name Light-Harvesting Protein Complexes
92 rdf:type schema:DefinedTerm
93 N37c65c1711c840bfb0d17e8c68ad52ea schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
94 schema:name Chlorophyll
95 rdf:type schema:DefinedTerm
96 N437f08171ad7495d83a9cd2ecb90e0d5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
97 schema:name Membrane Proteins
98 rdf:type schema:DefinedTerm
99 N5d85a9fee4f741b68c08252b58a4399a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
100 schema:name Photosynthetic Reaction Center Complex Proteins
101 rdf:type schema:DefinedTerm
102 N6dbe399fee80471684a9ee9c54110854 rdf:first sg:person.015270564437.26
103 rdf:rest N1c3f186da9a34414b4087fc71aee0d4b
104 N83c451a60a974b6fa1b46912cd46e5b6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
105 schema:name Microscopy, Electron
106 rdf:type schema:DefinedTerm
107 N8618eb3af11c47099dbd617931790295 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
108 schema:name Amino Acid Sequence
109 rdf:type schema:DefinedTerm
110 N8933d3f25bfd41d3a8ed79642a89b705 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
111 schema:name Models, Molecular
112 rdf:type schema:DefinedTerm
113 Nb5e2bb05cdd54bc4a298a4f51b83958d schema:name pubmed_id
114 schema:value 8107845
115 rdf:type schema:PropertyValue
116 Nb8ffebeead38468aaa6e0573dd426f20 schema:issueNumber 6464
117 rdf:type schema:PublicationIssue
118 Nbf8840d0c56341c5bda8848b0d6ac203 rdf:first sg:person.01040206467.78
119 rdf:rest N6dbe399fee80471684a9ee9c54110854
120 Nc20125ba8de74d869dc8176c17229b08 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
121 schema:name Lutein
122 rdf:type schema:DefinedTerm
123 Nc687eebab42c4c3abf478232882c69c3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
124 schema:name Protein Structure, Secondary
125 rdf:type schema:DefinedTerm
126 Ndde0a45994ed45e3b8ed2d357bd3f90a schema:name doi
127 schema:value 10.1038/367614a0
128 rdf:type schema:PropertyValue
129 Ne8bff8b10b09436d9077a52bc77c871a schema:volumeNumber 367
130 rdf:type schema:PublicationVolume
131 Ned7850f4a5c84e9cb4fbd2244e78c0ac schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
132 schema:name Crystallography
133 rdf:type schema:DefinedTerm
134 Nf6bbc324251e40c9b1d5ff20960d129c schema:name dimensions_id
135 schema:value pub.1046683584
136 rdf:type schema:PropertyValue
137 Nfbc6926f88764e418a1ba53a674d17e2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
138 schema:name Molecular Sequence Data
139 rdf:type schema:DefinedTerm
140 anzsrc-for:02 schema:inDefinedTermSet anzsrc-for:
141 schema:name Physical Sciences
142 rdf:type schema:DefinedTerm
143 anzsrc-for:0299 schema:inDefinedTermSet anzsrc-for:
144 schema:name Other Physical Sciences
145 rdf:type schema:DefinedTerm
146 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
147 schema:name Biological Sciences
148 rdf:type schema:DefinedTerm
149 anzsrc-for:0601 schema:inDefinedTermSet anzsrc-for:
150 schema:name Biochemistry and Cell Biology
151 rdf:type schema:DefinedTerm
152 anzsrc-for:0607 schema:inDefinedTermSet anzsrc-for:
153 schema:name Plant Biology
154 rdf:type schema:DefinedTerm
155 sg:journal.1018957 schema:issn 0028-0836
156 1476-4687
157 schema:name Nature
158 schema:publisher Springer Nature
159 rdf:type schema:Periodical
160 sg:person.01040206467.78 schema:affiliation grid-institutes:grid.4709.a
161 schema:familyName Kühlbrandt
162 schema:givenName Werner
163 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040206467.78
164 rdf:type schema:Person
165 sg:person.01077633456.74 schema:affiliation grid-institutes:grid.4709.a
166 schema:familyName Fujiyoshi
167 schema:givenName Yoshinori
168 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077633456.74
169 rdf:type schema:Person
170 sg:person.015270564437.26 schema:affiliation grid-institutes:grid.4709.a
171 schema:familyName Wang
172 schema:givenName Da Neng
173 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015270564437.26
174 rdf:type schema:Person
175 sg:pub.10.1007/bf00014747 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004009003
176 https://doi.org/10.1007/bf00014747
177 rdf:type schema:CreativeWork
178 sg:pub.10.1007/bf02411539 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049962291
179 https://doi.org/10.1007/bf02411539
180 rdf:type schema:CreativeWork
181 sg:pub.10.1007/bf03166035 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028175545
182 https://doi.org/10.1007/bf03166035
183 rdf:type schema:CreativeWork
184 sg:pub.10.1038/318618a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020599081
185 https://doi.org/10.1038/318618a0
186 rdf:type schema:CreativeWork
187 sg:pub.10.1038/350130a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004598521
188 https://doi.org/10.1038/350130a0
189 rdf:type schema:CreativeWork
190 sg:pub.10.1038/361326a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006800927
191 https://doi.org/10.1038/361326a0
192 rdf:type schema:CreativeWork
193 grid-institutes:grid.4709.a schema:alternateName European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117, Heidelberg, Germany
194 schema:name European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117, Heidelberg, Germany
195 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...