Sequence homology between spinach nuclear and chloroplast genomes View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1983-09

AUTHORS

Jeremy N. Timmis, N. Steele Scott

ABSTRACT

Relatively few chloroplast (ct) or mitochondrial (mt) proteins are encoded and synthesized within the organelles, the majority being made on cytoplasmic ribosomes from messenger RNAs transcribed from nuclear genes1,2. How this interaction of genetic systems evolved is poorly understood. Whether the chloroplast or mitochondrial specific genes now residing in the nucleus arose de novo, or by genetic exchange between the nucleus and a symbiotic autonomous prokaryote, is an intriguing unanswered question, although that such genetic exchange is possible is strongly suggested by recent reports of homology between maize mitochondrial and chloroplast genomes3 and the presence of mitochondrial sequences in yeast nuclei4. We now present evidence that the spinach nucleus contains integrated sequences that are homologous to ctDNA sequences and that these sequences are incorporated at specific sites within the genome. The experiments also show a region of homology between ctDNA and mtDNA. More... »

PAGES

65

Journal

TITLE

Nature

ISSUE

5929

VOLUME

305

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/305065a0

DOI

http://dx.doi.org/10.1038/305065a0

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1018391216


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "familyName": "Timmis", 
        "givenName": "Jeremy N.", 
        "id": "sg:person.0653622704.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0653622704.20"
        ], 
        "type": "Person"
      }, 
      {
        "familyName": "Scott", 
        "givenName": "N. Steele", 
        "id": "sg:person.01126320764.46", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01126320764.46"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/301296a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005454057", 
          "https://doi.org/10.1038/301296a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/8.19.4321", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018245215"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/299678a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021539298", 
          "https://doi.org/10.1038/299678a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/292860a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024461091", 
          "https://doi.org/10.1038/292860a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0968-0004(81)90002-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024605192"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0968-0004(81)90002-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024605192"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.69.1.67", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026904138"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0378-1119(81)90100-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027265884"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0378-1119(81)90100-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027265884"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0022-2836(75)80083-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033296365"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.60.4.625", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040321862"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev.pp.32.060181.000551", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042300193"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/299698a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053116149", 
          "https://doi.org/10.1038/299698a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.51.4.677", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053327440"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/jxb/23.4.1050", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1059853751"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1099/0022-1317-57-1-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060354539"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/sqb.1974.038.01.040", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060404335"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1983-09", 
    "datePublishedReg": "1983-09-01", 
    "description": "Relatively few chloroplast (ct) or mitochondrial (mt) proteins are encoded and synthesized within the organelles, the majority being made on cytoplasmic ribosomes from messenger RNAs transcribed from nuclear genes1,2. How this interaction of genetic systems evolved is poorly understood. Whether the chloroplast or mitochondrial specific genes now residing in the nucleus arose de novo, or by genetic exchange between the nucleus and a symbiotic autonomous prokaryote, is an intriguing unanswered question, although that such genetic exchange is possible is strongly suggested by recent reports of homology between maize mitochondrial and chloroplast genomes3 and the presence of mitochondrial sequences in yeast nuclei4. We now present evidence that the spinach nucleus contains integrated sequences that are homologous to ctDNA sequences and that these sequences are incorporated at specific sites within the genome. The experiments also show a region of homology between ctDNA and mtDNA.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1038/305065a0", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1018957", 
        "issn": [
          "0090-0028", 
          "1476-4687"
        ], 
        "name": "Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "5929", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "305"
      }
    ], 
    "name": "Sequence homology between spinach nuclear and chloroplast genomes", 
    "pagination": "65", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "57a0e742337b322c2bd6276edaef0f8b04b5c9817d330b430afc4b6fae1ba208"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/305065a0"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1018391216"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/305065a0", 
      "https://app.dimensions.ai/details/publication/pub.1018391216"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T16:28", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8669_00000424.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://www.nature.com/articles/305065a0"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/305065a0'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/305065a0'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/305065a0'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/305065a0'


 

This table displays all metadata directly associated to this object as RDF triples.

112 TRIPLES      21 PREDICATES      42 URIs      19 LITERALS      7 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/305065a0 schema:about anzsrc-for:06
2 anzsrc-for:0604
3 schema:author Nf82ce3ca8eeb464596ee01a92a360301
4 schema:citation sg:pub.10.1038/292860a0
5 sg:pub.10.1038/299678a0
6 sg:pub.10.1038/299698a0
7 sg:pub.10.1038/301296a0
8 https://doi.org/10.1016/0378-1119(81)90100-1
9 https://doi.org/10.1016/0968-0004(81)90002-5
10 https://doi.org/10.1016/s0022-2836(75)80083-0
11 https://doi.org/10.1093/jxb/23.4.1050
12 https://doi.org/10.1093/nar/8.19.4321
13 https://doi.org/10.1099/0022-1317-57-1-1
14 https://doi.org/10.1101/sqb.1974.038.01.040
15 https://doi.org/10.1104/pp.51.4.677
16 https://doi.org/10.1104/pp.60.4.625
17 https://doi.org/10.1104/pp.69.1.67
18 https://doi.org/10.1146/annurev.pp.32.060181.000551
19 schema:datePublished 1983-09
20 schema:datePublishedReg 1983-09-01
21 schema:description Relatively few chloroplast (ct) or mitochondrial (mt) proteins are encoded and synthesized within the organelles, the majority being made on cytoplasmic ribosomes from messenger RNAs transcribed from nuclear genes1,2. How this interaction of genetic systems evolved is poorly understood. Whether the chloroplast or mitochondrial specific genes now residing in the nucleus arose de novo, or by genetic exchange between the nucleus and a symbiotic autonomous prokaryote, is an intriguing unanswered question, although that such genetic exchange is possible is strongly suggested by recent reports of homology between maize mitochondrial and chloroplast genomes3 and the presence of mitochondrial sequences in yeast nuclei4. We now present evidence that the spinach nucleus contains integrated sequences that are homologous to ctDNA sequences and that these sequences are incorporated at specific sites within the genome. The experiments also show a region of homology between ctDNA and mtDNA.
22 schema:genre research_article
23 schema:inLanguage en
24 schema:isAccessibleForFree false
25 schema:isPartOf N4072dd0417d74c7cbde0dcc138760b6e
26 N60dc37abcd64490bbbfcebd504294ee8
27 sg:journal.1018957
28 schema:name Sequence homology between spinach nuclear and chloroplast genomes
29 schema:pagination 65
30 schema:productId N061634a327b94e7a9d00f842aef599f9
31 N7488d2113c22466b9ff92f4f8b844eea
32 Nac69c1c63c584c21b7089c9fc6c61432
33 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018391216
34 https://doi.org/10.1038/305065a0
35 schema:sdDatePublished 2019-04-10T16:28
36 schema:sdLicense https://scigraph.springernature.com/explorer/license/
37 schema:sdPublisher Nbd1972e34f1641f8ac41036dda7d7284
38 schema:url https://www.nature.com/articles/305065a0
39 sgo:license sg:explorer/license/
40 sgo:sdDataset articles
41 rdf:type schema:ScholarlyArticle
42 N061634a327b94e7a9d00f842aef599f9 schema:name readcube_id
43 schema:value 57a0e742337b322c2bd6276edaef0f8b04b5c9817d330b430afc4b6fae1ba208
44 rdf:type schema:PropertyValue
45 N4072dd0417d74c7cbde0dcc138760b6e schema:volumeNumber 305
46 rdf:type schema:PublicationVolume
47 N60dc37abcd64490bbbfcebd504294ee8 schema:issueNumber 5929
48 rdf:type schema:PublicationIssue
49 N7488d2113c22466b9ff92f4f8b844eea schema:name doi
50 schema:value 10.1038/305065a0
51 rdf:type schema:PropertyValue
52 N9bbdf27e760c47728bca3a5a646f5377 rdf:first sg:person.01126320764.46
53 rdf:rest rdf:nil
54 Nac69c1c63c584c21b7089c9fc6c61432 schema:name dimensions_id
55 schema:value pub.1018391216
56 rdf:type schema:PropertyValue
57 Nbd1972e34f1641f8ac41036dda7d7284 schema:name Springer Nature - SN SciGraph project
58 rdf:type schema:Organization
59 Nf82ce3ca8eeb464596ee01a92a360301 rdf:first sg:person.0653622704.20
60 rdf:rest N9bbdf27e760c47728bca3a5a646f5377
61 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
62 schema:name Biological Sciences
63 rdf:type schema:DefinedTerm
64 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
65 schema:name Genetics
66 rdf:type schema:DefinedTerm
67 sg:journal.1018957 schema:issn 0090-0028
68 1476-4687
69 schema:name Nature
70 rdf:type schema:Periodical
71 sg:person.01126320764.46 schema:familyName Scott
72 schema:givenName N. Steele
73 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01126320764.46
74 rdf:type schema:Person
75 sg:person.0653622704.20 schema:familyName Timmis
76 schema:givenName Jeremy N.
77 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0653622704.20
78 rdf:type schema:Person
79 sg:pub.10.1038/292860a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024461091
80 https://doi.org/10.1038/292860a0
81 rdf:type schema:CreativeWork
82 sg:pub.10.1038/299678a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021539298
83 https://doi.org/10.1038/299678a0
84 rdf:type schema:CreativeWork
85 sg:pub.10.1038/299698a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053116149
86 https://doi.org/10.1038/299698a0
87 rdf:type schema:CreativeWork
88 sg:pub.10.1038/301296a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005454057
89 https://doi.org/10.1038/301296a0
90 rdf:type schema:CreativeWork
91 https://doi.org/10.1016/0378-1119(81)90100-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027265884
92 rdf:type schema:CreativeWork
93 https://doi.org/10.1016/0968-0004(81)90002-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024605192
94 rdf:type schema:CreativeWork
95 https://doi.org/10.1016/s0022-2836(75)80083-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033296365
96 rdf:type schema:CreativeWork
97 https://doi.org/10.1093/jxb/23.4.1050 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059853751
98 rdf:type schema:CreativeWork
99 https://doi.org/10.1093/nar/8.19.4321 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018245215
100 rdf:type schema:CreativeWork
101 https://doi.org/10.1099/0022-1317-57-1-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060354539
102 rdf:type schema:CreativeWork
103 https://doi.org/10.1101/sqb.1974.038.01.040 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060404335
104 rdf:type schema:CreativeWork
105 https://doi.org/10.1104/pp.51.4.677 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053327440
106 rdf:type schema:CreativeWork
107 https://doi.org/10.1104/pp.60.4.625 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040321862
108 rdf:type schema:CreativeWork
109 https://doi.org/10.1104/pp.69.1.67 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026904138
110 rdf:type schema:CreativeWork
111 https://doi.org/10.1146/annurev.pp.32.060181.000551 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042300193
112 rdf:type schema:CreativeWork
 




Preview window. Press ESC to close (or click here)


...