β-Sheet topology and the relatedness of proteins View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

1977-08

AUTHORS

Jane S. Richardson

ABSTRACT

The topological connectivities of β-pleated sheets in the known protein structures are systematically surveyed for regularly occurring features. The many empirical restrictions found and the distribution of actually occurring topologies among the hypothetically possible ones suggest that striking topological similarities between different proteins can readily happen by chance.

PAGES

495-500

Identifiers

URI

http://scigraph.springernature.com/pub.10.1038/268495a0

DOI

http://dx.doi.org/10.1038/268495a0

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1052649401

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/329147


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biochemistry and Cell Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Biological Evolution", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Probability Theory", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Protein Conformation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Terminology as Topic", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Thermodynamics", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Anatomy, Duke University, 27710, Durham, North Carolina", 
          "id": "http://www.grid.ac/institutes/grid.26009.3d", 
          "name": [
            "Department of Anatomy, Duke University, 27710, Durham, North Carolina"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Richardson", 
        "givenName": "Jane S.", 
        "id": "sg:person.015445210647.42", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015445210647.42"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/255609a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013635254", 
          "https://doi.org/10.1038/255609a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/newbio235131a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032134914", 
          "https://doi.org/10.1038/newbio235131a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/261552a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041807436", 
          "https://doi.org/10.1038/261552a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/250142a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034161283", 
          "https://doi.org/10.1038/250142a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/250301a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001281799", 
          "https://doi.org/10.1038/250301a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/250120a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001213054", 
          "https://doi.org/10.1038/250120a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/247014a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039118357", 
          "https://doi.org/10.1038/247014a0"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1977-08", 
    "datePublishedReg": "1977-08-01", 
    "description": "The topological connectivities of \u03b2-pleated sheets in the known protein structures are systematically surveyed for regularly occurring features. The many empirical restrictions found and the distribution of actually occurring topologies among the hypothetically possible ones suggest that striking topological similarities between different proteins can readily happen by chance.", 
    "genre": "article", 
    "id": "sg:pub.10.1038/268495a0", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1018957", 
        "issn": [
          "0028-0836", 
          "1476-4687"
        ], 
        "name": "Nature", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "5620", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "268"
      }
    ], 
    "keywords": [
      "protein structure", 
      "different proteins", 
      "\u03b2-sheet topology", 
      "relatedness of proteins", 
      "empirical restrictions", 
      "topological similarity", 
      "protein", 
      "relatedness", 
      "restriction", 
      "similarity", 
      "connectivity", 
      "structure", 
      "features", 
      "distribution", 
      "topology", 
      "possible ones", 
      "one", 
      "chance", 
      "topological connectivity", 
      "sheets"
    ], 
    "name": "\u03b2-Sheet topology and the relatedness of proteins", 
    "pagination": "495-500", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1052649401"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1038/268495a0"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "329147"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1038/268495a0", 
      "https://app.dimensions.ai/details/publication/pub.1052649401"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-09-02T15:44", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220902/entities/gbq_results/article/article_123.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1038/268495a0"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1038/268495a0'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1038/268495a0'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1038/268495a0'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1038/268495a0'


 

This table displays all metadata directly associated to this object as RDF triples.

129 TRIPLES      21 PREDICATES      58 URIs      43 LITERALS      12 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1038/268495a0 schema:about N2cbfe759d4484eb4b63dbbbe844c2c34
2 N4b47f16a9b0942e69aee01cbdad8fe93
3 Ne4d942420f664f3d937dfde45bf56185
4 Nf97cd8ceabe540f7877ceb8a09b72de2
5 Nfae9e84fe1d84f2590b0dbd18124cd0b
6 anzsrc-for:06
7 anzsrc-for:0601
8 schema:author N49d1f6e198924f21be1f7567c20971af
9 schema:citation sg:pub.10.1038/247014a0
10 sg:pub.10.1038/250120a0
11 sg:pub.10.1038/250142a0
12 sg:pub.10.1038/250301a0
13 sg:pub.10.1038/255609a0
14 sg:pub.10.1038/261552a0
15 sg:pub.10.1038/newbio235131a0
16 schema:datePublished 1977-08
17 schema:datePublishedReg 1977-08-01
18 schema:description The topological connectivities of β-pleated sheets in the known protein structures are systematically surveyed for regularly occurring features. The many empirical restrictions found and the distribution of actually occurring topologies among the hypothetically possible ones suggest that striking topological similarities between different proteins can readily happen by chance.
19 schema:genre article
20 schema:isAccessibleForFree false
21 schema:isPartOf N0a2797a342e04a85b8510f912cb8b11b
22 N53c27f175569444abe3664093eb36047
23 sg:journal.1018957
24 schema:keywords chance
25 connectivity
26 different proteins
27 distribution
28 empirical restrictions
29 features
30 one
31 possible ones
32 protein
33 protein structure
34 relatedness
35 relatedness of proteins
36 restriction
37 sheets
38 similarity
39 structure
40 topological connectivity
41 topological similarity
42 topology
43 β-sheet topology
44 schema:name β-Sheet topology and the relatedness of proteins
45 schema:pagination 495-500
46 schema:productId Nbba0c0b6431742e8a58f58d8a51ca794
47 Nc53f8cb468ae4f35a2969879bc672983
48 Ne1fd0e5beebc4c7bb838629492d5c859
49 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052649401
50 https://doi.org/10.1038/268495a0
51 schema:sdDatePublished 2022-09-02T15:44
52 schema:sdLicense https://scigraph.springernature.com/explorer/license/
53 schema:sdPublisher N32e11d428a954f0e8951c5f5b4b28d07
54 schema:url https://doi.org/10.1038/268495a0
55 sgo:license sg:explorer/license/
56 sgo:sdDataset articles
57 rdf:type schema:ScholarlyArticle
58 N0a2797a342e04a85b8510f912cb8b11b schema:issueNumber 5620
59 rdf:type schema:PublicationIssue
60 N2cbfe759d4484eb4b63dbbbe844c2c34 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
61 schema:name Probability Theory
62 rdf:type schema:DefinedTerm
63 N32e11d428a954f0e8951c5f5b4b28d07 schema:name Springer Nature - SN SciGraph project
64 rdf:type schema:Organization
65 N49d1f6e198924f21be1f7567c20971af rdf:first sg:person.015445210647.42
66 rdf:rest rdf:nil
67 N4b47f16a9b0942e69aee01cbdad8fe93 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
68 schema:name Terminology as Topic
69 rdf:type schema:DefinedTerm
70 N53c27f175569444abe3664093eb36047 schema:volumeNumber 268
71 rdf:type schema:PublicationVolume
72 Nbba0c0b6431742e8a58f58d8a51ca794 schema:name pubmed_id
73 schema:value 329147
74 rdf:type schema:PropertyValue
75 Nc53f8cb468ae4f35a2969879bc672983 schema:name doi
76 schema:value 10.1038/268495a0
77 rdf:type schema:PropertyValue
78 Ne1fd0e5beebc4c7bb838629492d5c859 schema:name dimensions_id
79 schema:value pub.1052649401
80 rdf:type schema:PropertyValue
81 Ne4d942420f664f3d937dfde45bf56185 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
82 schema:name Protein Conformation
83 rdf:type schema:DefinedTerm
84 Nf97cd8ceabe540f7877ceb8a09b72de2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
85 schema:name Thermodynamics
86 rdf:type schema:DefinedTerm
87 Nfae9e84fe1d84f2590b0dbd18124cd0b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
88 schema:name Biological Evolution
89 rdf:type schema:DefinedTerm
90 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
91 schema:name Biological Sciences
92 rdf:type schema:DefinedTerm
93 anzsrc-for:0601 schema:inDefinedTermSet anzsrc-for:
94 schema:name Biochemistry and Cell Biology
95 rdf:type schema:DefinedTerm
96 sg:journal.1018957 schema:issn 0028-0836
97 1476-4687
98 schema:name Nature
99 schema:publisher Springer Nature
100 rdf:type schema:Periodical
101 sg:person.015445210647.42 schema:affiliation grid-institutes:grid.26009.3d
102 schema:familyName Richardson
103 schema:givenName Jane S.
104 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015445210647.42
105 rdf:type schema:Person
106 sg:pub.10.1038/247014a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039118357
107 https://doi.org/10.1038/247014a0
108 rdf:type schema:CreativeWork
109 sg:pub.10.1038/250120a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001213054
110 https://doi.org/10.1038/250120a0
111 rdf:type schema:CreativeWork
112 sg:pub.10.1038/250142a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034161283
113 https://doi.org/10.1038/250142a0
114 rdf:type schema:CreativeWork
115 sg:pub.10.1038/250301a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001281799
116 https://doi.org/10.1038/250301a0
117 rdf:type schema:CreativeWork
118 sg:pub.10.1038/255609a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013635254
119 https://doi.org/10.1038/255609a0
120 rdf:type schema:CreativeWork
121 sg:pub.10.1038/261552a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041807436
122 https://doi.org/10.1038/261552a0
123 rdf:type schema:CreativeWork
124 sg:pub.10.1038/newbio235131a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032134914
125 https://doi.org/10.1038/newbio235131a0
126 rdf:type schema:CreativeWork
127 grid-institutes:grid.26009.3d schema:alternateName Department of Anatomy, Duke University, 27710, Durham, North Carolina
128 schema:name Department of Anatomy, Duke University, 27710, Durham, North Carolina
129 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...