Ontology type: schema:ScholarlyArticle
2004-01
AUTHORSGillian Dean, Stuart Casson, Keith Lindsey
ABSTRACTAs part of a programme to determine whether root development requires a pathway involving KNOTTED-like homeobox ( KNOX ) genes, we cloned the KNAT6 cDNA, a member of the KNOX gene family in Arabidopsis, from root tissue. The KNAT6 cDNA is represented by two isoforms, suggesting that the KNAT6 transcript is subject to alternative splicing. Promoter-reporter and RT-PCR analysis confirms expression of the KNAT6 gene in roots, and in particular in the phloem tissue close to the site of lateral root initiation, though not in the primary or lateral root meristem. The KNAT6 gene promoter activity is altered in pattern by treatment with exogenous auxin and in the rooty mutant background, with expression shifting distally in the root. In contrast, exogenous cytokinin suppresses KNAT6 promoter activity. KNAT6::GFP fusion protein is localized to the nucleus, consistent with the predicted function of KNAT6 as a transcription factor. Over-expression of the more abundant shorter isoform of the KNAT6 cDNA, but not of the less abundant longer form, leads to a lobed leaf phenotype, but no consistently aberrant root phenotype. Down-regulation of KNAT6 expression by RNA interference was associated with an increased total number of lateral roots. These data indicate a role for KNAT6 in modulating lateral root formation. More... »
PAGES71-84
http://scigraph.springernature.com/pub.10.1023/b:plan.0000028772.22892.2d
DOIhttp://dx.doi.org/10.1023/b:plan.0000028772.22892.2d
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1049318093
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/15159635
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Amino Acid Sequence",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Arabidopsis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Arabidopsis Proteins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Base Sequence",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Carrier Proteins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cloning, Molecular",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA, Complementary",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Regulation, Developmental",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Regulation, Plant",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Glucuronidase",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Molecular Sequence Data",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Roots",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plants, Genetically Modified",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Promoter Regions, Genetic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Protein Isoforms",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "RNA Interference",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Recombinant Fusion Proteins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Transcription, Genetic",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "University of British Columbia",
"id": "https://www.grid.ac/institutes/grid.17091.3e",
"name": [
"Botany Department, University of British Columbia, 6270 University Boulevard, V6T 1Z4, Vancouver, BC, Canada"
],
"type": "Organization"
},
"familyName": "Dean",
"givenName": "Gillian",
"id": "sg:person.0756415312.86",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0756415312.86"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Durham University",
"id": "https://www.grid.ac/institutes/grid.8250.f",
"name": [
"Integrative Cell Biology Laboratory, School of Biological and Biomedical Sciences University of Durham, South Road, DH1 3LE, Durham, UK"
],
"type": "Organization"
},
"familyName": "Casson",
"givenName": "Stuart",
"id": "sg:person.01014217765.33",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01014217765.33"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Durham University",
"id": "https://www.grid.ac/institutes/grid.8250.f",
"name": [
"Integrative Cell Biology Laboratory, School of Biological and Biomedical Sciences University of Durham, South Road, DH1 3LE, Durham, UK"
],
"type": "Organization"
},
"familyName": "Lindsey",
"givenName": "Keith",
"id": "sg:person.0772622544.88",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0772622544.88"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1016/0003-2697(87)90086-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004106761"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.270.52.31178",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008259271"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/36856",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008439456",
"https://doi.org/10.1038/36856"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/36856",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008439456",
"https://doi.org/10.1038/36856"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1999.00472.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009511757"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.9.17.2131",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012608994"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1998.00217.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013016906"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1998.00217.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013016906"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1998.00343.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013777935"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.126.4.1370",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014599781"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1995.07060927.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014678309"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0168-9452(89)90249-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015854100"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s004250050693",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018784634",
"https://doi.org/10.1007/s004250050693"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1998.00281.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021270290"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.004960",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021464903"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.189200",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021538440"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.ge.22.120188.002513",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022300400"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s004250100598",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024607448",
"https://doi.org/10.1007/s004250100598"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/378062a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025538253",
"https://doi.org/10.1038/378062a0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.210501",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027966939"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.002618",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031806596"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0378-1119(02)00460-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032044277"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.004564",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032097987"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.116.2.471",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032952532"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.9.18.2292",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033352033"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00017799",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034965136",
"https://doi.org/10.1007/bf00017799"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00017799",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034965136",
"https://doi.org/10.1007/bf00017799"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/350241a0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035431375",
"https://doi.org/10.1038/350241a0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00021196",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036043555",
"https://doi.org/10.1007/bf00021196"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00021196",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036043555",
"https://doi.org/10.1007/bf00021196"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/25.21.4173",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036894914"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/oxfordjournals.pcp.a029252",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037524294"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.072626099",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040179056"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02668345",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040544940",
"https://doi.org/10.1007/bf02668345"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02668345",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040544940",
"https://doi.org/10.1007/bf02668345"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0960-9822(02)01125-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050854656"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.2001.00996.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052245090"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.13.7.1653",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060842168"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3869913",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467870"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3869914",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467871"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870065",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468003"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870131",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468061"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870148",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468075"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870301",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468212"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870519",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468404"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3871314",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070469105"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3871344",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070469133"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3871587",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070469259"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1074801732",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1075026809",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1075053570",
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.000828",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1075064438"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1077884155",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1082425466",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1082734269",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1083036271",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1083135655",
"type": "CreativeWork"
}
],
"datePublished": "2004-01",
"datePublishedReg": "2004-01-01",
"description": "As part of a programme to determine whether root development requires a pathway involving KNOTTED-like homeobox ( KNOX ) genes, we cloned the KNAT6 cDNA, a member of the KNOX gene family in Arabidopsis, from root tissue. The KNAT6 cDNA is represented by two isoforms, suggesting that the KNAT6 transcript is subject to alternative splicing. Promoter-reporter and RT-PCR analysis confirms expression of the KNAT6 gene in roots, and in particular in the phloem tissue close to the site of lateral root initiation, though not in the primary or lateral root meristem. The KNAT6 gene promoter activity is altered in pattern by treatment with exogenous auxin and in the rooty mutant background, with expression shifting distally in the root. In contrast, exogenous cytokinin suppresses KNAT6 promoter activity. KNAT6::GFP fusion protein is localized to the nucleus, consistent with the predicted function of KNAT6 as a transcription factor. Over-expression of the more abundant shorter isoform of the KNAT6 cDNA, but not of the less abundant longer form, leads to a lobed leaf phenotype, but no consistently aberrant root phenotype. Down-regulation of KNAT6 expression by RNA interference was associated with an increased total number of lateral roots. These data indicate a role for KNAT6 in modulating lateral root formation.",
"genre": "research_article",
"id": "sg:pub.10.1023/b:plan.0000028772.22892.2d",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1101246",
"issn": [
"0167-4412",
"1573-5028"
],
"name": "Plant Molecular Biology",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "54"
}
],
"name": "KNAT6 gene of Arabidopsis is expressed in roots and is required for correct lateral root formation",
"pagination": "71-84",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"eaf1453a6e2385f482a3ad1e6fbc7f70f852528b592f6140e4de7fbf7fed14a6"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"15159635"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"9106343"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1023/b:plan.0000028772.22892.2d"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1049318093"
]
}
],
"sameAs": [
"https://doi.org/10.1023/b:plan.0000028772.22892.2d",
"https://app.dimensions.ai/details/publication/pub.1049318093"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T19:07",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8678_00000508.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1023%2FB%3APLAN.0000028772.22892.2d"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1023/b:plan.0000028772.22892.2d'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1023/b:plan.0000028772.22892.2d'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1023/b:plan.0000028772.22892.2d'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1023/b:plan.0000028772.22892.2d'
This table displays all metadata directly associated to this object as RDF triples.
314 TRIPLES
21 PREDICATES
99 URIs
39 LITERALS
27 BLANK NODES