Molecular and cytological characterization of SspI-family repetitive sequence on the chicken W chromosome View Full Text


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Article Info

DATE

2002-09

AUTHORS

Yuichiro Itoh, Shigeki Mizuno

ABSTRACT

A genomic clone, pWS44, isolated from the chicken W chromosome-specific genomic library contained a partial (226-bp) sequence of a novel SspI-family repetitive sequence. A genomic clone, pWPRS09, containing a 508-bp SspI fragment (a repeating unit of the family) was subsequently obtained and sequenced. This 0.5-kb unit is tandemly repeated about 11 300 times. FISH to mitotic and lampbrush W chromosomes indicates that the SspI-family is located on the chromomere 6 between heterochromatic and distal non-heterochromatic regions on the short arm. The SspI-family sequence was proved to be a good positional marker in FISH mapping of active genes in the non-heterochromatic region on the lampbrush W chromosome. The presence of SspI-family repetitive sequence is limited to the genus Gallus (chickens and jungle fowls). The 0.5-kb repeating unit contains a 120-bp stretch of polypurine/polypyrimidine sequence (GGAGA repeats), shows no DNA curvature, and rapid electrophoretic mobility in 4% polyacrylamide gel at 4°C. The SspI-family forms a relatively diffused chromatin structure in nuclei. These features are distinctly different from those of XhoI- and EcoRI-family sequences on the W chromosome. The total amount of non-repetitive DNA in the chicken W chromosome is estimated to be about 10 Mb. More... »

PAGES

499-511

References to SciGraph publications

  • 2002-07-16. Triplex-forming DNAs in the human interphase nucleus visualized in situ by polypurine/polypyrimidine DNA probes and antitriplex antibodies in CHROMOSOMA
  • 1997-02. Molecular characterization and cytological mapping of a non-repetitive DNA sequence region from the W chromosome of chicken and its use as a universal probe for sexing Carinatae birds in CHROMOSOME RESEARCH
  • 2001. Chicken spindling genes on W and Z chromosomes: transcriptional expression of both genes and dynamic behavior of spindlin in interphase and mitotic cells in CHROMOSOME RESEARCH
  • 1992-06. Distribution of XhoI and EcoRI family repetitive DNA sequences into separate domains in the chicken W chromosome in CHROMOSOMA
  • 1993-09. Avian sex chromosomes in the lampbrush form: the ZW lampbrush bivalents from six species of bird in CHROMOSOME RESEARCH
  • 2000-04. ASW: a gene with conserved avian W-linkage and female specific expression in chick embryonic gonad in DEVELOPMENT GENES AND EVOLUTION
  • 1984-03. Genus specificity and extensive methylation of the W chromosome-specific repetitive DNA sequences from the domestic fowl, Gallus gallus domesticus in CHROMOSOMA
  • 1989-06. Triple-strand formation in the homopurine:homopyrimidine DNA oligonucleotides d(G-A)4 and d(T-C)4 in NATURE
  • 1991-10. Occupancy of the majority of DNA in the chicken W chromosome by bent-repetitive sequences in CHROMOSOMA
  • 1977-06. Ultrastructure of the synaptic autosomes and the ZW bivalent in chicken oocytes in CHROMOSOMA
  • 2001-02. Transcripts of the MHM region on the chicken Z chromosome accumulate as non-coding RNA in the nucleus of female cells adjacent to the DMRT1 locus in CHROMOSOME RESEARCH
  • 1996-09. Characterization of DNA sequences constituting the terminal heterochromatin of the chicken Z chromosome in CHROMOSOME RESEARCH
  • 1987-12. Nucleotide sequences and unusual electrophoretic behavior of the W chromosome-specific repeating DNA units of the domestic fowl, Gallus gallus domesticus in CHROMOSOMA
  • 1998-06. Specific Chromomeres on the Chicken W Lampbrush Chromosome Contain Specific Repetitive DNA Sequence Families in CHROMOSOME RESEARCH
  • 1993-06. W-heterochromatin of chicken; its unusual DNA components, late replication, and chromatin structure in GENETICA
  • 1996-12. Transcription on lampbrush chromosomes of a centromerically localized highly repeated DNA in pigeon (Columba) relates to sequence arrangement in CHROMOSOME RESEARCH
  • 1994-11. The arrangement and transcription of telomere DNA sequences at the ends of lampbrush chromosomes of birds in CHROMOSOME RESEARCH
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1023/a:1020944414750

    DOI

    http://dx.doi.org/10.1023/a:1020944414750

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1030966086

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/12489831


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