Occurrence of MIR Elements in the Complete Nucleotide Sequence of Human Chromosome 22 View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2001-05

AUTHORS

E. V. Korotkov, M. A. Korotkova

ABSTRACT

The location of mammalian interspersed repeats (MIRs) and their density have been determined in the complete nucleotide sequence of human chromosome 22. The approach developed by us has allowed detection of 9675 MIRs at a statistically significant level, which by 15% exceeds the MIR number revealed by all previous approaches. It has been demonstrated that a considerable amount of MIRs missed by the algorithms applied earlier occurs in known DNA sequences of the human genome. The study of the MIR density revealed substantial irregularity of their distribution along the chromosome. The data on the MIRs thus found and the computer program searching for diverged sequences are available by E-mail: katrin2@mail.ru or katrin22@mtu-net.ru. More... »

PAGES

318-323

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1023/a:1010454224112

DOI

http://dx.doi.org/10.1023/a:1010454224112

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1014548030


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Russian Academy of Sciences", 
          "id": "https://www.grid.ac/institutes/grid.4886.2", 
          "name": [
            "Center of Bioengineering, Russian Academy of Sciences, 117312, Moscow, Russia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Korotkov", 
        "givenName": "E. V.", 
        "id": "sg:person.01274151123.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01274151123.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Moscow Engineering Physics Institute", 
          "id": "https://www.grid.ac/institutes/grid.183446.c", 
          "name": [
            "Moscow Engineering and Physical Institute, 115409, Moscow, Russia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Korotkova", 
        "givenName": "M. A.", 
        "id": "sg:person.01127050710.59", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01127050710.59"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1016/s0959-437x(99)00031-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004537235"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.96.6.2869", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006958885"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/jmbi.2000.3695", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011212465"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3109/10425179709020882", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012376984"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/23.1.98", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016898743"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0959-440x(98)80067-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019740863"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0097-8485(96)80013-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025864339"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/23.1.170", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038254702"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02202117", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043044960", 
          "https://doi.org/10.1007/bf02202117"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02202117", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043044960", 
          "https://doi.org/10.1007/bf02202117"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02202117", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043044960", 
          "https://doi.org/10.1007/bf02202117"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/990031", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048671863", 
          "https://doi.org/10.1038/990031"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/990031", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048671863", 
          "https://doi.org/10.1038/990031"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/dnares/3.3.157", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050171782"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1089/omi.1.1997.2.75", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1059303524"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/9.4.407", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1059414296"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2001-05", 
    "datePublishedReg": "2001-05-01", 
    "description": "The location of mammalian interspersed repeats (MIRs) and their density have been determined in the complete nucleotide sequence of human chromosome 22. The approach developed by us has allowed detection of 9675 MIRs at a statistically significant level, which by 15% exceeds the MIR number revealed by all previous approaches. It has been demonstrated that a considerable amount of MIRs missed by the algorithms applied earlier occurs in known DNA sequences of the human genome. The study of the MIR density revealed substantial irregularity of their distribution along the chromosome. The data on the MIRs thus found and the computer program searching for diverged sequences are available by E-mail: katrin2@mail.ru or katrin22@mtu-net.ru.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1023/a:1010454224112", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1356887", 
        "issn": [
          "0026-8933", 
          "1608-3245"
        ], 
        "name": "Molecular Biology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "3", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "35"
      }
    ], 
    "name": "Occurrence of MIR Elements in the Complete Nucleotide Sequence of Human Chromosome 22", 
    "pagination": "318-323", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "454e473dab87e07da003bc7836af93fe25d6600f913522d8f653572129468eac"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1023/a:1010454224112"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1014548030"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1023/a:1010454224112", 
      "https://app.dimensions.ai/details/publication/pub.1014548030"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T15:56", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8664_00000536.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1023%2FA%3A1010454224112"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1023/a:1010454224112'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1023/a:1010454224112'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1023/a:1010454224112'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1023/a:1010454224112'


 

This table displays all metadata directly associated to this object as RDF triples.

112 TRIPLES      21 PREDICATES      40 URIs      19 LITERALS      7 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1023/a:1010454224112 schema:about anzsrc-for:06
2 anzsrc-for:0604
3 schema:author Need2110865cc42f9a65fc7b3cbd00208
4 schema:citation sg:pub.10.1007/bf02202117
5 sg:pub.10.1038/990031
6 https://doi.org/10.1006/jmbi.2000.3695
7 https://doi.org/10.1016/s0097-8485(96)80013-1
8 https://doi.org/10.1016/s0959-437x(99)00031-3
9 https://doi.org/10.1016/s0959-440x(98)80067-5
10 https://doi.org/10.1073/pnas.96.6.2869
11 https://doi.org/10.1089/omi.1.1997.2.75
12 https://doi.org/10.1093/bioinformatics/9.4.407
13 https://doi.org/10.1093/dnares/3.3.157
14 https://doi.org/10.1093/nar/23.1.170
15 https://doi.org/10.1093/nar/23.1.98
16 https://doi.org/10.3109/10425179709020882
17 schema:datePublished 2001-05
18 schema:datePublishedReg 2001-05-01
19 schema:description The location of mammalian interspersed repeats (MIRs) and their density have been determined in the complete nucleotide sequence of human chromosome 22. The approach developed by us has allowed detection of 9675 MIRs at a statistically significant level, which by 15% exceeds the MIR number revealed by all previous approaches. It has been demonstrated that a considerable amount of MIRs missed by the algorithms applied earlier occurs in known DNA sequences of the human genome. The study of the MIR density revealed substantial irregularity of their distribution along the chromosome. The data on the MIRs thus found and the computer program searching for diverged sequences are available by E-mail: katrin2@mail.ru or katrin22@mtu-net.ru.
20 schema:genre research_article
21 schema:inLanguage en
22 schema:isAccessibleForFree false
23 schema:isPartOf N6abc59001bc54915a42132f1a0a3555b
24 Na10c85dc41ee42d2a526f836c17e7106
25 sg:journal.1356887
26 schema:name Occurrence of MIR Elements in the Complete Nucleotide Sequence of Human Chromosome 22
27 schema:pagination 318-323
28 schema:productId N9dcde531bf4444ce9922a12f30d3d823
29 Nab13e828b07143eda7162c7e712e9fb4
30 Nc5a36b39c19f454fa39d697568c72763
31 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014548030
32 https://doi.org/10.1023/a:1010454224112
33 schema:sdDatePublished 2019-04-10T15:56
34 schema:sdLicense https://scigraph.springernature.com/explorer/license/
35 schema:sdPublisher N0970ce04fa86404a8f29d142153574f1
36 schema:url http://link.springer.com/10.1023%2FA%3A1010454224112
37 sgo:license sg:explorer/license/
38 sgo:sdDataset articles
39 rdf:type schema:ScholarlyArticle
40 N0970ce04fa86404a8f29d142153574f1 schema:name Springer Nature - SN SciGraph project
41 rdf:type schema:Organization
42 N6abc59001bc54915a42132f1a0a3555b schema:volumeNumber 35
43 rdf:type schema:PublicationVolume
44 N9dcde531bf4444ce9922a12f30d3d823 schema:name readcube_id
45 schema:value 454e473dab87e07da003bc7836af93fe25d6600f913522d8f653572129468eac
46 rdf:type schema:PropertyValue
47 Na10c85dc41ee42d2a526f836c17e7106 schema:issueNumber 3
48 rdf:type schema:PublicationIssue
49 Na905718e80af47f09a4ad11fcc14474c rdf:first sg:person.01127050710.59
50 rdf:rest rdf:nil
51 Nab13e828b07143eda7162c7e712e9fb4 schema:name dimensions_id
52 schema:value pub.1014548030
53 rdf:type schema:PropertyValue
54 Nc5a36b39c19f454fa39d697568c72763 schema:name doi
55 schema:value 10.1023/a:1010454224112
56 rdf:type schema:PropertyValue
57 Need2110865cc42f9a65fc7b3cbd00208 rdf:first sg:person.01274151123.51
58 rdf:rest Na905718e80af47f09a4ad11fcc14474c
59 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
60 schema:name Biological Sciences
61 rdf:type schema:DefinedTerm
62 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
63 schema:name Genetics
64 rdf:type schema:DefinedTerm
65 sg:journal.1356887 schema:issn 0026-8933
66 1608-3245
67 schema:name Molecular Biology
68 rdf:type schema:Periodical
69 sg:person.01127050710.59 schema:affiliation https://www.grid.ac/institutes/grid.183446.c
70 schema:familyName Korotkova
71 schema:givenName M. A.
72 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01127050710.59
73 rdf:type schema:Person
74 sg:person.01274151123.51 schema:affiliation https://www.grid.ac/institutes/grid.4886.2
75 schema:familyName Korotkov
76 schema:givenName E. V.
77 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01274151123.51
78 rdf:type schema:Person
79 sg:pub.10.1007/bf02202117 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043044960
80 https://doi.org/10.1007/bf02202117
81 rdf:type schema:CreativeWork
82 sg:pub.10.1038/990031 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048671863
83 https://doi.org/10.1038/990031
84 rdf:type schema:CreativeWork
85 https://doi.org/10.1006/jmbi.2000.3695 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011212465
86 rdf:type schema:CreativeWork
87 https://doi.org/10.1016/s0097-8485(96)80013-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025864339
88 rdf:type schema:CreativeWork
89 https://doi.org/10.1016/s0959-437x(99)00031-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004537235
90 rdf:type schema:CreativeWork
91 https://doi.org/10.1016/s0959-440x(98)80067-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019740863
92 rdf:type schema:CreativeWork
93 https://doi.org/10.1073/pnas.96.6.2869 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006958885
94 rdf:type schema:CreativeWork
95 https://doi.org/10.1089/omi.1.1997.2.75 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059303524
96 rdf:type schema:CreativeWork
97 https://doi.org/10.1093/bioinformatics/9.4.407 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059414296
98 rdf:type schema:CreativeWork
99 https://doi.org/10.1093/dnares/3.3.157 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050171782
100 rdf:type schema:CreativeWork
101 https://doi.org/10.1093/nar/23.1.170 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038254702
102 rdf:type schema:CreativeWork
103 https://doi.org/10.1093/nar/23.1.98 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016898743
104 rdf:type schema:CreativeWork
105 https://doi.org/10.3109/10425179709020882 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012376984
106 rdf:type schema:CreativeWork
107 https://www.grid.ac/institutes/grid.183446.c schema:alternateName Moscow Engineering Physics Institute
108 schema:name Moscow Engineering and Physical Institute, 115409, Moscow, Russia
109 rdf:type schema:Organization
110 https://www.grid.ac/institutes/grid.4886.2 schema:alternateName Russian Academy of Sciences
111 schema:name Center of Bioengineering, Russian Academy of Sciences, 117312, Moscow, Russia
112 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...