Cloning, mapping and expression analysis of barley MADS-box genes View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2000-04

AUTHORS

Jürgen Schmitz, Rainer Franzen, Thi Ha Ngyuen, Federico Garcia-Maroto, Carlo Pozzi, Francesco Salamini, Wolfgang Rohde

ABSTRACT

Six MADS-box cDNA clones were isolated by heterologous screening from a barley inflorescence cDNA library. Based on sequence comparison to known MADS-box genes, the barley MADS-box (BM) genes were grouped into three distinct phylogenetic subclasses of the MADS-box gene family. The three MADS-box genes BM3, BM5 and BM8 share similarities with genes of the SQUAMOSA (SQUA) subgroup, while BM7 and BM9 belong to the AGAMOUS-LIKE 2 (AGL2) subgroup. BM1 resembles MADS-box genes described as solitary sequences or orphan genes. Expression analysis of the barley MADS-box genes revealed expression patterns that are not characteristic of the barley MADS-box genes of the SQUA subgroup. while expression of BM7 and BM9 was largely as expected for the AGL2 subgroup. BM1 is mainly expressed in vegetative tissues and its primary transcript undergoes alternative splicing such that the corresponding mRNAs differ by two codons. The genes BM1, BM3 and BM8 were mapped by analysis of single-nucleotide polymorphisms onto barley chromosomes 4, 2 and 7, respectively. More... »

PAGES

899-913

References to SciGraph publications

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1023/a:1006425619953

    DOI

    http://dx.doi.org/10.1023/a:1006425619953

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1032728514

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/10890536


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