Molecular evolution of the chalcone synthase multigene family in the morning glory genome View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2000-01

AUTHORS

Mary L. Durbin, Bonnie McCaig, Michael T. Clegg

ABSTRACT

Plant genomes appear to exploit the process of gene duplication as a primary means of acquiring biochemical and developmental flexibility. Thus, for example, most of the enzymatic components of plant secondary metabolism are encoded by small families of genes that originated through duplication over evolutionary time. The dynamics of gene family evolution are well illustrated by the genes that encode chalcone synthase (CHS), the first committed step in flavonoid biosynthesis. We review pertinent facts about CHS evolution in flowering plants with special reference to the morning glory genus, Ipomoea. Our review shows that new CHS genes are recruited recurrently in flowering plant evolution. Rates of nucleotide substitution are frequently accelerated in new duplicate genes, and there is clear evidence for repeated shifts in enzymatic function among duplicate copies of CHS genes. In addition, we present new data on expression patterns of CHS genes as a function of tissue and developmental stage in the common morning glory (I. purpurea). These data show extensive differentiation in gene expression among duplicate copies of CHS genes. We also show that a single mutation which blocks anthocyanin biosynthesis in the floral limb is correlated with a loss of expression of one of the six duplicate CHS genes present in the morning glory genome. This suggests that different duplicate copies of CHS have acquired specialized functional roles over the course of evolution. We conclude that recurrent gene duplication and subsequent differentiation is a major adaptive strategy in plant genome evolution. More... »

PAGES

79-92

References to SciGraph publications

  • 1989-02. The chalcone synthase multigene family of Petunia hybrida (V30): differential, light-regulated expression during flower development and UV light induction in PLANT MOLECULAR BIOLOGY
  • 1994-06. Evidence that stilbene synthases have developed from chalcone synthases several times in the course of evolution in JOURNAL OF MOLECULAR EVOLUTION
  • 1986-03. Structure of the chalcone synthase gene of Antirrhinum majus in MOLECULAR GENETICS AND GENOMICS
  • 1980-06. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences in JOURNAL OF MOLECULAR EVOLUTION
  • 1988-12. Chalcone synthases from spinach (Spinacia oleracea L.) in PLANTA
  • 1998-01. Evolution of Substrate Specificities in the P-Type ATPase Superfamily in JOURNAL OF MOLECULAR EVOLUTION
  • 1990-11. Molecular genetic analysis of chalcone synthase in Lycopersicon esculentum and an anthocyanin-deficient mutant in MOLECULAR GENETICS AND GENOMICS
  • 1987-12. Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris in MOLECULAR GENETICS AND GENOMICS
  • 1998-07. A chalcone synthase with an unusual substrate preference is expressed in barley leaves in response to UV light and pathogen attack in PLANT MOLECULAR BIOLOGY
  • 1987-03. The chalcone synthase multigene family of Petunia hybrida (V30): sequence homology, chromosomal localization and evolutionary aspects in PLANT MOLECULAR BIOLOGY
  • 1931-04. Analysis of flower colour inPharbitis Nil in JOURNAL OF GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1023/a:1006375904820

    DOI

    http://dx.doi.org/10.1023/a:1006375904820

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1004723968

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/10688131


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Acyltransferases", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Evolution, Molecular", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genetic Variation", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genome, Plant", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genotype", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Multigene Family", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phylogeny", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Plants", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "University of California, Riverside", 
              "id": "https://www.grid.ac/institutes/grid.266097.c", 
              "name": [
                "Botany and Plant Sciences Department, University of California, 92521, Riverside, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Durbin", 
            "givenName": "Mary L.", 
            "id": "sg:person.01250450202.58", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01250450202.58"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of California, Riverside", 
              "id": "https://www.grid.ac/institutes/grid.266097.c", 
              "name": [
                "Botany and Plant Sciences Department, University of California, 92521, Riverside, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "McCaig", 
            "givenName": "Bonnie", 
            "id": "sg:person.0753205635.34", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0753205635.34"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of California, Riverside", 
              "id": "https://www.grid.ac/institutes/grid.266097.c", 
              "name": [
                "Botany and Plant Sciences Department, University of California, 92521, Riverside, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Clegg", 
            "givenName": "Michael T.", 
            "id": "sg:person.01146631174.19", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01146631174.19"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1046/j.1365-294x.1997.00220.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001041191"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-294x.1997.00220.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001041191"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00271562", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001650691", 
              "https://doi.org/10.1007/bf00271562"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00271562", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001650691", 
              "https://doi.org/10.1007/bf00271562"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02983854", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003396392", 
              "https://doi.org/10.1007/bf02983854"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02983854", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003396392", 
              "https://doi.org/10.1007/bf02983854"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1006/bbrc.1997.6666", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008304244"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.93.17.9033", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010272552"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/pl00006286", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011413241", 
              "https://doi.org/10.1007/pl00006286"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00958968", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015133063", 
              "https://doi.org/10.1007/bf00958968"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/b978-1-4832-3211-9.50009-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016180325"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1074/jbc.270.14.7922", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021269199"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0074-7696(08)60770-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021908047"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/bies.950160209", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021961598"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1266/ggs.73.105", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022847535"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf01731581", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023239976", 
              "https://doi.org/10.1007/bf01731581"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf01731581", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023239976", 
              "https://doi.org/10.1007/bf01731581"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf01731581", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023239976", 
              "https://doi.org/10.1007/bf01731581"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s1360-1385(97)87121-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026370380"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00016153", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026817103", 
              "https://doi.org/10.1007/bf00016153"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00016153", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026817103", 
              "https://doi.org/10.1007/bf00016153"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.pcp.a029232", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030232713"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.93.19.10274", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030242883"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.96.3.680", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030247432"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-313x.1998.00308.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030714601"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1006031822141", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034859849", 
              "https://doi.org/10.1023/a:1006031822141"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00175881", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035604311", 
              "https://doi.org/10.1007/bf00175881"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1432-1033.1997.00283.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036868075"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.84.24.8966", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039345349"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00333273", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041964473", 
              "https://doi.org/10.1007/bf00333273"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0031-9422(90)85002-w", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042427855"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/22.22.4673", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042438223"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0378-1119(89)90185-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046976186"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0378-1119(89)90185-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046976186"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev.pp.43.060192.001325", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047039830"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00325687", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047686818", 
              "https://doi.org/10.1007/bf00325687"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.94.15.7791", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048074081"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00020506", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049803750", 
              "https://doi.org/10.1007/bf00020506"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00020506", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049803750", 
              "https://doi.org/10.1007/bf00020506"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.92.8.3338", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052792852"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/bi980204g", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055215523"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/bi980204g", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055215523"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.3775377", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1062621437"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1079691000", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1082473347", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a040152", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1082587004"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.jhered.a109778", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1083485790"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.jhered.a110450", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1083486022"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.jhered.a111242", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1083486328"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a040788", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1083622103"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2000-01", 
        "datePublishedReg": "2000-01-01", 
        "description": "Plant genomes appear to exploit the process of gene duplication as a primary means of acquiring biochemical and developmental flexibility. Thus, for example, most of the enzymatic components of plant secondary metabolism are encoded by small families of genes that originated through duplication over evolutionary time. The dynamics of gene family evolution are well illustrated by the genes that encode chalcone synthase (CHS), the first committed step in flavonoid biosynthesis. We review pertinent facts about CHS evolution in flowering plants with special reference to the morning glory genus, Ipomoea. Our review shows that new CHS genes are recruited recurrently in flowering plant evolution. Rates of nucleotide substitution are frequently accelerated in new duplicate genes, and there is clear evidence for repeated shifts in enzymatic function among duplicate copies of CHS genes. In addition, we present new data on expression patterns of CHS genes as a function of tissue and developmental stage in the common morning glory (I. purpurea). These data show extensive differentiation in gene expression among duplicate copies of CHS genes. We also show that a single mutation which blocks anthocyanin biosynthesis in the floral limb is correlated with a loss of expression of one of the six duplicate CHS genes present in the morning glory genome. This suggests that different duplicate copies of CHS have acquired specialized functional roles over the course of evolution. We conclude that recurrent gene duplication and subsequent differentiation is a major adaptive strategy in plant genome evolution.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1023/a:1006375904820", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": false, 
        "isPartOf": [
          {
            "id": "sg:journal.1101246", 
            "issn": [
              "0167-4412", 
              "1573-5028"
            ], 
            "name": "Plant Molecular Biology", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "42"
          }
        ], 
        "name": "Molecular evolution of the chalcone synthase multigene family in the morning glory genome", 
        "pagination": "79-92", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "16827507a23ef5c0947d3e807b285973f0fa9e227884a1947bfe149cfaadf77f"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "10688131"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "9106343"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1023/a:1006375904820"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1004723968"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1023/a:1006375904820", 
          "https://app.dimensions.ai/details/publication/pub.1004723968"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T19:05", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8678_00000498.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1023/A:1006375904820"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1023/a:1006375904820'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1023/a:1006375904820'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1023/a:1006375904820'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1023/a:1006375904820'


     

    This table displays all metadata directly associated to this object as RDF triples.

    247 TRIPLES      21 PREDICATES      78 URIs      29 LITERALS      17 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1023/a:1006375904820 schema:about N2290a0c154e84de7ad92f8ee65a4c495
    2 N2958049ed066499ca370236118ae0267
    3 N2ed52a9bd1fe4927a982ab13296f7b1c
    4 N7617acf63cef4f27a5a5b2ca0f91f99b
    5 Nb037d51ed7d14fcd966364eaf0adee17
    6 Nce5c626f9db440caa482ae496aaca3f4
    7 Ndaa1698dd4c04b8f988645fe6b6c6e2b
    8 Nfe18cd40a0b84937b9e2c753d832e4d1
    9 anzsrc-for:06
    10 anzsrc-for:0604
    11 schema:author N95a99a635f84409a9b9951c649316bb3
    12 schema:citation sg:pub.10.1007/bf00016153
    13 sg:pub.10.1007/bf00020506
    14 sg:pub.10.1007/bf00175881
    15 sg:pub.10.1007/bf00271562
    16 sg:pub.10.1007/bf00325687
    17 sg:pub.10.1007/bf00333273
    18 sg:pub.10.1007/bf00958968
    19 sg:pub.10.1007/bf01731581
    20 sg:pub.10.1007/bf02983854
    21 sg:pub.10.1007/pl00006286
    22 sg:pub.10.1023/a:1006031822141
    23 https://app.dimensions.ai/details/publication/pub.1079691000
    24 https://app.dimensions.ai/details/publication/pub.1082473347
    25 https://doi.org/10.1002/bies.950160209
    26 https://doi.org/10.1006/bbrc.1997.6666
    27 https://doi.org/10.1016/0031-9422(90)85002-w
    28 https://doi.org/10.1016/0378-1119(89)90185-6
    29 https://doi.org/10.1016/b978-1-4832-3211-9.50009-7
    30 https://doi.org/10.1016/s0074-7696(08)60770-6
    31 https://doi.org/10.1016/s1360-1385(97)87121-x
    32 https://doi.org/10.1021/bi980204g
    33 https://doi.org/10.1046/j.1365-294x.1997.00220.x
    34 https://doi.org/10.1046/j.1365-313x.1998.00308.x
    35 https://doi.org/10.1073/pnas.84.24.8966
    36 https://doi.org/10.1073/pnas.92.8.3338
    37 https://doi.org/10.1073/pnas.93.17.9033
    38 https://doi.org/10.1073/pnas.93.19.10274
    39 https://doi.org/10.1073/pnas.94.15.7791
    40 https://doi.org/10.1074/jbc.270.14.7922
    41 https://doi.org/10.1093/nar/22.22.4673
    42 https://doi.org/10.1093/oxfordjournals.jhered.a109778
    43 https://doi.org/10.1093/oxfordjournals.jhered.a110450
    44 https://doi.org/10.1093/oxfordjournals.jhered.a111242
    45 https://doi.org/10.1093/oxfordjournals.molbev.a040152
    46 https://doi.org/10.1093/oxfordjournals.molbev.a040788
    47 https://doi.org/10.1093/oxfordjournals.pcp.a029232
    48 https://doi.org/10.1104/pp.96.3.680
    49 https://doi.org/10.1111/j.1432-1033.1997.00283.x
    50 https://doi.org/10.1126/science.3775377
    51 https://doi.org/10.1146/annurev.pp.43.060192.001325
    52 https://doi.org/10.1266/ggs.73.105
    53 schema:datePublished 2000-01
    54 schema:datePublishedReg 2000-01-01
    55 schema:description Plant genomes appear to exploit the process of gene duplication as a primary means of acquiring biochemical and developmental flexibility. Thus, for example, most of the enzymatic components of plant secondary metabolism are encoded by small families of genes that originated through duplication over evolutionary time. The dynamics of gene family evolution are well illustrated by the genes that encode chalcone synthase (CHS), the first committed step in flavonoid biosynthesis. We review pertinent facts about CHS evolution in flowering plants with special reference to the morning glory genus, Ipomoea. Our review shows that new CHS genes are recruited recurrently in flowering plant evolution. Rates of nucleotide substitution are frequently accelerated in new duplicate genes, and there is clear evidence for repeated shifts in enzymatic function among duplicate copies of CHS genes. In addition, we present new data on expression patterns of CHS genes as a function of tissue and developmental stage in the common morning glory (I. purpurea). These data show extensive differentiation in gene expression among duplicate copies of CHS genes. We also show that a single mutation which blocks anthocyanin biosynthesis in the floral limb is correlated with a loss of expression of one of the six duplicate CHS genes present in the morning glory genome. This suggests that different duplicate copies of CHS have acquired specialized functional roles over the course of evolution. We conclude that recurrent gene duplication and subsequent differentiation is a major adaptive strategy in plant genome evolution.
    56 schema:genre research_article
    57 schema:inLanguage en
    58 schema:isAccessibleForFree false
    59 schema:isPartOf N09e4174851214d28a3b35c9b35644283
    60 N53cb83c28d5044f7962e3892e90ac237
    61 sg:journal.1101246
    62 schema:name Molecular evolution of the chalcone synthase multigene family in the morning glory genome
    63 schema:pagination 79-92
    64 schema:productId N540a98c864c248079c7826ca34465eb9
    65 N84dd7cd67bef45d780c4f95b3dd0ecc7
    66 Nba7d6baf6c0241b984bfd8dcfff9f882
    67 Nc883ec698b6f4bdeb572627aae5cc015
    68 Ned2638bf5e0446c3955a7325bc1b9138
    69 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004723968
    70 https://doi.org/10.1023/a:1006375904820
    71 schema:sdDatePublished 2019-04-10T19:05
    72 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    73 schema:sdPublisher N562c623d2da641fba31fd47d7ac00951
    74 schema:url http://link.springer.com/10.1023/A:1006375904820
    75 sgo:license sg:explorer/license/
    76 sgo:sdDataset articles
    77 rdf:type schema:ScholarlyArticle
    78 N09e4174851214d28a3b35c9b35644283 schema:volumeNumber 42
    79 rdf:type schema:PublicationVolume
    80 N0a5fed97ecef4882a6a096cb47f8729e rdf:first sg:person.01146631174.19
    81 rdf:rest rdf:nil
    82 N2290a0c154e84de7ad92f8ee65a4c495 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    83 schema:name Evolution, Molecular
    84 rdf:type schema:DefinedTerm
    85 N2958049ed066499ca370236118ae0267 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    86 schema:name Acyltransferases
    87 rdf:type schema:DefinedTerm
    88 N2ed52a9bd1fe4927a982ab13296f7b1c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    89 schema:name Genotype
    90 rdf:type schema:DefinedTerm
    91 N53cb83c28d5044f7962e3892e90ac237 schema:issueNumber 1
    92 rdf:type schema:PublicationIssue
    93 N540a98c864c248079c7826ca34465eb9 schema:name nlm_unique_id
    94 schema:value 9106343
    95 rdf:type schema:PropertyValue
    96 N562c623d2da641fba31fd47d7ac00951 schema:name Springer Nature - SN SciGraph project
    97 rdf:type schema:Organization
    98 N7617acf63cef4f27a5a5b2ca0f91f99b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    99 schema:name Genome, Plant
    100 rdf:type schema:DefinedTerm
    101 N7cb039ef7b754aea94fd6f5fcecd2a78 rdf:first sg:person.0753205635.34
    102 rdf:rest N0a5fed97ecef4882a6a096cb47f8729e
    103 N84dd7cd67bef45d780c4f95b3dd0ecc7 schema:name doi
    104 schema:value 10.1023/a:1006375904820
    105 rdf:type schema:PropertyValue
    106 N95a99a635f84409a9b9951c649316bb3 rdf:first sg:person.01250450202.58
    107 rdf:rest N7cb039ef7b754aea94fd6f5fcecd2a78
    108 Nb037d51ed7d14fcd966364eaf0adee17 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    109 schema:name Plants
    110 rdf:type schema:DefinedTerm
    111 Nba7d6baf6c0241b984bfd8dcfff9f882 schema:name pubmed_id
    112 schema:value 10688131
    113 rdf:type schema:PropertyValue
    114 Nc883ec698b6f4bdeb572627aae5cc015 schema:name readcube_id
    115 schema:value 16827507a23ef5c0947d3e807b285973f0fa9e227884a1947bfe149cfaadf77f
    116 rdf:type schema:PropertyValue
    117 Nce5c626f9db440caa482ae496aaca3f4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    118 schema:name Multigene Family
    119 rdf:type schema:DefinedTerm
    120 Ndaa1698dd4c04b8f988645fe6b6c6e2b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    121 schema:name Genetic Variation
    122 rdf:type schema:DefinedTerm
    123 Ned2638bf5e0446c3955a7325bc1b9138 schema:name dimensions_id
    124 schema:value pub.1004723968
    125 rdf:type schema:PropertyValue
    126 Nfe18cd40a0b84937b9e2c753d832e4d1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    127 schema:name Phylogeny
    128 rdf:type schema:DefinedTerm
    129 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    130 schema:name Biological Sciences
    131 rdf:type schema:DefinedTerm
    132 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    133 schema:name Genetics
    134 rdf:type schema:DefinedTerm
    135 sg:journal.1101246 schema:issn 0167-4412
    136 1573-5028
    137 schema:name Plant Molecular Biology
    138 rdf:type schema:Periodical
    139 sg:person.01146631174.19 schema:affiliation https://www.grid.ac/institutes/grid.266097.c
    140 schema:familyName Clegg
    141 schema:givenName Michael T.
    142 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01146631174.19
    143 rdf:type schema:Person
    144 sg:person.01250450202.58 schema:affiliation https://www.grid.ac/institutes/grid.266097.c
    145 schema:familyName Durbin
    146 schema:givenName Mary L.
    147 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01250450202.58
    148 rdf:type schema:Person
    149 sg:person.0753205635.34 schema:affiliation https://www.grid.ac/institutes/grid.266097.c
    150 schema:familyName McCaig
    151 schema:givenName Bonnie
    152 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0753205635.34
    153 rdf:type schema:Person
    154 sg:pub.10.1007/bf00016153 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026817103
    155 https://doi.org/10.1007/bf00016153
    156 rdf:type schema:CreativeWork
    157 sg:pub.10.1007/bf00020506 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049803750
    158 https://doi.org/10.1007/bf00020506
    159 rdf:type schema:CreativeWork
    160 sg:pub.10.1007/bf00175881 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035604311
    161 https://doi.org/10.1007/bf00175881
    162 rdf:type schema:CreativeWork
    163 sg:pub.10.1007/bf00271562 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001650691
    164 https://doi.org/10.1007/bf00271562
    165 rdf:type schema:CreativeWork
    166 sg:pub.10.1007/bf00325687 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047686818
    167 https://doi.org/10.1007/bf00325687
    168 rdf:type schema:CreativeWork
    169 sg:pub.10.1007/bf00333273 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041964473
    170 https://doi.org/10.1007/bf00333273
    171 rdf:type schema:CreativeWork
    172 sg:pub.10.1007/bf00958968 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015133063
    173 https://doi.org/10.1007/bf00958968
    174 rdf:type schema:CreativeWork
    175 sg:pub.10.1007/bf01731581 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023239976
    176 https://doi.org/10.1007/bf01731581
    177 rdf:type schema:CreativeWork
    178 sg:pub.10.1007/bf02983854 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003396392
    179 https://doi.org/10.1007/bf02983854
    180 rdf:type schema:CreativeWork
    181 sg:pub.10.1007/pl00006286 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011413241
    182 https://doi.org/10.1007/pl00006286
    183 rdf:type schema:CreativeWork
    184 sg:pub.10.1023/a:1006031822141 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034859849
    185 https://doi.org/10.1023/a:1006031822141
    186 rdf:type schema:CreativeWork
    187 https://app.dimensions.ai/details/publication/pub.1079691000 schema:CreativeWork
    188 https://app.dimensions.ai/details/publication/pub.1082473347 schema:CreativeWork
    189 https://doi.org/10.1002/bies.950160209 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021961598
    190 rdf:type schema:CreativeWork
    191 https://doi.org/10.1006/bbrc.1997.6666 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008304244
    192 rdf:type schema:CreativeWork
    193 https://doi.org/10.1016/0031-9422(90)85002-w schema:sameAs https://app.dimensions.ai/details/publication/pub.1042427855
    194 rdf:type schema:CreativeWork
    195 https://doi.org/10.1016/0378-1119(89)90185-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046976186
    196 rdf:type schema:CreativeWork
    197 https://doi.org/10.1016/b978-1-4832-3211-9.50009-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016180325
    198 rdf:type schema:CreativeWork
    199 https://doi.org/10.1016/s0074-7696(08)60770-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021908047
    200 rdf:type schema:CreativeWork
    201 https://doi.org/10.1016/s1360-1385(97)87121-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1026370380
    202 rdf:type schema:CreativeWork
    203 https://doi.org/10.1021/bi980204g schema:sameAs https://app.dimensions.ai/details/publication/pub.1055215523
    204 rdf:type schema:CreativeWork
    205 https://doi.org/10.1046/j.1365-294x.1997.00220.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1001041191
    206 rdf:type schema:CreativeWork
    207 https://doi.org/10.1046/j.1365-313x.1998.00308.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1030714601
    208 rdf:type schema:CreativeWork
    209 https://doi.org/10.1073/pnas.84.24.8966 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039345349
    210 rdf:type schema:CreativeWork
    211 https://doi.org/10.1073/pnas.92.8.3338 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052792852
    212 rdf:type schema:CreativeWork
    213 https://doi.org/10.1073/pnas.93.17.9033 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010272552
    214 rdf:type schema:CreativeWork
    215 https://doi.org/10.1073/pnas.93.19.10274 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030242883
    216 rdf:type schema:CreativeWork
    217 https://doi.org/10.1073/pnas.94.15.7791 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048074081
    218 rdf:type schema:CreativeWork
    219 https://doi.org/10.1074/jbc.270.14.7922 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021269199
    220 rdf:type schema:CreativeWork
    221 https://doi.org/10.1093/nar/22.22.4673 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042438223
    222 rdf:type schema:CreativeWork
    223 https://doi.org/10.1093/oxfordjournals.jhered.a109778 schema:sameAs https://app.dimensions.ai/details/publication/pub.1083485790
    224 rdf:type schema:CreativeWork
    225 https://doi.org/10.1093/oxfordjournals.jhered.a110450 schema:sameAs https://app.dimensions.ai/details/publication/pub.1083486022
    226 rdf:type schema:CreativeWork
    227 https://doi.org/10.1093/oxfordjournals.jhered.a111242 schema:sameAs https://app.dimensions.ai/details/publication/pub.1083486328
    228 rdf:type schema:CreativeWork
    229 https://doi.org/10.1093/oxfordjournals.molbev.a040152 schema:sameAs https://app.dimensions.ai/details/publication/pub.1082587004
    230 rdf:type schema:CreativeWork
    231 https://doi.org/10.1093/oxfordjournals.molbev.a040788 schema:sameAs https://app.dimensions.ai/details/publication/pub.1083622103
    232 rdf:type schema:CreativeWork
    233 https://doi.org/10.1093/oxfordjournals.pcp.a029232 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030232713
    234 rdf:type schema:CreativeWork
    235 https://doi.org/10.1104/pp.96.3.680 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030247432
    236 rdf:type schema:CreativeWork
    237 https://doi.org/10.1111/j.1432-1033.1997.00283.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1036868075
    238 rdf:type schema:CreativeWork
    239 https://doi.org/10.1126/science.3775377 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062621437
    240 rdf:type schema:CreativeWork
    241 https://doi.org/10.1146/annurev.pp.43.060192.001325 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047039830
    242 rdf:type schema:CreativeWork
    243 https://doi.org/10.1266/ggs.73.105 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022847535
    244 rdf:type schema:CreativeWork
    245 https://www.grid.ac/institutes/grid.266097.c schema:alternateName University of California, Riverside
    246 schema:name Botany and Plant Sciences Department, University of California, 92521, Riverside, CA, USA
    247 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...