Collision induced decomposition of peptides. Choice of collision parameters View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

1996-07

AUTHORS

Ivan Haller, Urooj A. Mirza, Brian T. Chait

ABSTRACT

Collision-induced dissociation product ion spectra of a series of doubly charged tryptic peptide ions produced by electrospray ionization were obtained by triple-quadrupole tandem mass spectrometry. The sequence information content of the product ion spectra was explored as a function of collision energy and collision-cell gas pressure for parent ions with molecular masses ranging from 300 to 2000 u. The energy range (at a given pressure) in which the degree of fragmentation is acceptable was found to be narrow for parent ions of a given mass, and the optimal collision energy was observed to exhibit a strong linear correlation with parent ion mass. This observed correlation opens the way for on-line software-controled selection of optimal mass spectrometric conditions in the enzymatic digestion-liquid chromatography-tandem mass spectrometric strategy of amino acid sequencing of proteins. More... »

PAGES

677-681

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1016/1044-0305(96)85613-3

DOI

http://dx.doi.org/10.1016/1044-0305(96)85613-3

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1045475715

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/24203483


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0306", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Physical Chemistry (incl. Structural)", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/03", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Chemical Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Rockefeller University", 
          "id": "https://www.grid.ac/institutes/grid.134907.8", 
          "name": [
            "Mass Spectrometry Laboratory, The Rockefeller University, 1230 York Avenue, New York, New York, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Haller", 
        "givenName": "Ivan", 
        "id": "sg:person.01174204721.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01174204721.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Rockefeller University", 
          "id": "https://www.grid.ac/institutes/grid.134907.8", 
          "name": [
            "Mass Spectrometry Laboratory, The Rockefeller University, 1230 York Avenue, New York, New York, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mirza", 
        "givenName": "Urooj A.", 
        "id": "sg:person.01074364450.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074364450.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Rockefeller University", 
          "id": "https://www.grid.ac/institutes/grid.134907.8", 
          "name": [
            "Mass Spectrometry Laboratory, The Rockefeller University, 1230 York Avenue, New York, New York, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Chait", 
        "givenName": "Brian T.", 
        "id": "sg:person.01040222507.59", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040222507.59"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1002/rcm.1290030512", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005321207"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/rcm.1290030512", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005321207"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev.bi.61.070192.004553", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005942356"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/pro.5560020207", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011635341"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/pro.5560020207", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011635341"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.83.17.6233", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013056026"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/rcm.1290071105", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013384703"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/rcm.1290071105", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013384703"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/meth.1994.1029", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013430864"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/meth.1994.1029", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013430864"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1016/1044-0305(92)85027-h", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026841664", 
          "https://doi.org/10.1016/1044-0305(92)85027-h"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1016/1044-0305(92)85027-h", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026841664", 
          "https://doi.org/10.1016/1044-0305(92)85027-h"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/bms.1200111109", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028733216"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/bms.1200111109", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028733216"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0168-1176(90)85071-9", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029180981"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/rcm.1290030408", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041483579"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/rcm.1290030408", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041483579"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1016/1044-0305(94)85066-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043869376", 
          "https://doi.org/10.1016/1044-0305(94)85066-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1016/1044-0305(94)85066-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043869376", 
          "https://doi.org/10.1016/1044-0305(94)85066-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ac00013a003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1054966007"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ac00014a024", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1054966108"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ac00068a020", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1054969859"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ac00074a010", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1054970301"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ac00106a008", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1054972317"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ja00097a055", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055706673"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1546328", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062490335"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1996-07", 
    "datePublishedReg": "1996-07-01", 
    "description": "Collision-induced dissociation product ion spectra of a series of doubly charged tryptic peptide ions produced by electrospray ionization were obtained by triple-quadrupole tandem mass spectrometry. The sequence information content of the product ion spectra was explored as a function of collision energy and collision-cell gas pressure for parent ions with molecular masses ranging from 300 to 2000 u. The energy range (at a given pressure) in which the degree of fragmentation is acceptable was found to be narrow for parent ions of a given mass, and the optimal collision energy was observed to exhibit a strong linear correlation with parent ion mass. This observed correlation opens the way for on-line software-controled selection of optimal mass spectrometric conditions in the enzymatic digestion-liquid chromatography-tandem mass spectrometric strategy of amino acid sequencing of proteins. ", 
    "genre": "research_article", 
    "id": "sg:pub.10.1016/1044-0305(96)85613-3", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isPartOf": [
      {
        "id": "sg:journal.1100508", 
        "issn": [
          "1044-0305", 
          "1879-1123"
        ], 
        "name": "Journal of The American Society for Mass Spectrometry", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "7", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "7"
      }
    ], 
    "name": "Collision induced decomposition of peptides. Choice of collision parameters", 
    "pagination": "677-681", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "d89eb5b2a720c99de1a3becf59035017ce3914d341459569ac339ee9737be629"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "24203483"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "9010412"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1016/1044-0305(96)85613-3"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1045475715"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1016/1044-0305(96)85613-3", 
      "https://app.dimensions.ai/details/publication/pub.1045475715"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T10:33", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000349_0000000349/records_113661_00000001.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1016%2F1044-0305%2896%2985613-3"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1016/1044-0305(96)85613-3'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1016/1044-0305(96)85613-3'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1016/1044-0305(96)85613-3'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1016/1044-0305(96)85613-3'


 

This table displays all metadata directly associated to this object as RDF triples.

139 TRIPLES      21 PREDICATES      47 URIs      21 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1016/1044-0305(96)85613-3 schema:about anzsrc-for:03
2 anzsrc-for:0306
3 schema:author Nc3146eb9ee33418c93db24c1fc9fbf53
4 schema:citation sg:pub.10.1016/1044-0305(92)85027-h
5 sg:pub.10.1016/1044-0305(94)85066-6
6 https://doi.org/10.1002/bms.1200111109
7 https://doi.org/10.1002/pro.5560020207
8 https://doi.org/10.1002/rcm.1290030408
9 https://doi.org/10.1002/rcm.1290030512
10 https://doi.org/10.1002/rcm.1290071105
11 https://doi.org/10.1006/meth.1994.1029
12 https://doi.org/10.1016/0168-1176(90)85071-9
13 https://doi.org/10.1021/ac00013a003
14 https://doi.org/10.1021/ac00014a024
15 https://doi.org/10.1021/ac00068a020
16 https://doi.org/10.1021/ac00074a010
17 https://doi.org/10.1021/ac00106a008
18 https://doi.org/10.1021/ja00097a055
19 https://doi.org/10.1073/pnas.83.17.6233
20 https://doi.org/10.1126/science.1546328
21 https://doi.org/10.1146/annurev.bi.61.070192.004553
22 schema:datePublished 1996-07
23 schema:datePublishedReg 1996-07-01
24 schema:description Collision-induced dissociation product ion spectra of a series of doubly charged tryptic peptide ions produced by electrospray ionization were obtained by triple-quadrupole tandem mass spectrometry. The sequence information content of the product ion spectra was explored as a function of collision energy and collision-cell gas pressure for parent ions with molecular masses ranging from 300 to 2000 u. The energy range (at a given pressure) in which the degree of fragmentation is acceptable was found to be narrow for parent ions of a given mass, and the optimal collision energy was observed to exhibit a strong linear correlation with parent ion mass. This observed correlation opens the way for on-line software-controled selection of optimal mass spectrometric conditions in the enzymatic digestion-liquid chromatography-tandem mass spectrometric strategy of amino acid sequencing of proteins.
25 schema:genre research_article
26 schema:inLanguage en
27 schema:isAccessibleForFree true
28 schema:isPartOf N312e0646023247df9cd96af01c7fd1c9
29 N41ad5e48906246d191b531c2a8659262
30 sg:journal.1100508
31 schema:name Collision induced decomposition of peptides. Choice of collision parameters
32 schema:pagination 677-681
33 schema:productId N06d0c7636abb477e9a7a23c310d2b5c4
34 N6a7bcdb0da284a388f4efad849274c2d
35 N8cd194d060d7465793a05c70626a847f
36 Nd19231c3f6234ba8b2a3abe23243a446
37 Nef3246bfe8a64524aeba3132e5dacdc8
38 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045475715
39 https://doi.org/10.1016/1044-0305(96)85613-3
40 schema:sdDatePublished 2019-04-11T10:33
41 schema:sdLicense https://scigraph.springernature.com/explorer/license/
42 schema:sdPublisher N35404e42da534b91ac12d91726f7bf1b
43 schema:url https://link.springer.com/10.1016%2F1044-0305%2896%2985613-3
44 sgo:license sg:explorer/license/
45 sgo:sdDataset articles
46 rdf:type schema:ScholarlyArticle
47 N06d0c7636abb477e9a7a23c310d2b5c4 schema:name dimensions_id
48 schema:value pub.1045475715
49 rdf:type schema:PropertyValue
50 N312e0646023247df9cd96af01c7fd1c9 schema:volumeNumber 7
51 rdf:type schema:PublicationVolume
52 N35404e42da534b91ac12d91726f7bf1b schema:name Springer Nature - SN SciGraph project
53 rdf:type schema:Organization
54 N41ad5e48906246d191b531c2a8659262 schema:issueNumber 7
55 rdf:type schema:PublicationIssue
56 N6a7bcdb0da284a388f4efad849274c2d schema:name nlm_unique_id
57 schema:value 9010412
58 rdf:type schema:PropertyValue
59 N8cd194d060d7465793a05c70626a847f schema:name doi
60 schema:value 10.1016/1044-0305(96)85613-3
61 rdf:type schema:PropertyValue
62 Nc3146eb9ee33418c93db24c1fc9fbf53 rdf:first sg:person.01174204721.04
63 rdf:rest Ndbf26251069f4e8a84493f5c80519a22
64 Nc621ce202e784db4baf916656f03cd50 rdf:first sg:person.01040222507.59
65 rdf:rest rdf:nil
66 Nd19231c3f6234ba8b2a3abe23243a446 schema:name pubmed_id
67 schema:value 24203483
68 rdf:type schema:PropertyValue
69 Ndbf26251069f4e8a84493f5c80519a22 rdf:first sg:person.01074364450.51
70 rdf:rest Nc621ce202e784db4baf916656f03cd50
71 Nef3246bfe8a64524aeba3132e5dacdc8 schema:name readcube_id
72 schema:value d89eb5b2a720c99de1a3becf59035017ce3914d341459569ac339ee9737be629
73 rdf:type schema:PropertyValue
74 anzsrc-for:03 schema:inDefinedTermSet anzsrc-for:
75 schema:name Chemical Sciences
76 rdf:type schema:DefinedTerm
77 anzsrc-for:0306 schema:inDefinedTermSet anzsrc-for:
78 schema:name Physical Chemistry (incl. Structural)
79 rdf:type schema:DefinedTerm
80 sg:journal.1100508 schema:issn 1044-0305
81 1879-1123
82 schema:name Journal of The American Society for Mass Spectrometry
83 rdf:type schema:Periodical
84 sg:person.01040222507.59 schema:affiliation https://www.grid.ac/institutes/grid.134907.8
85 schema:familyName Chait
86 schema:givenName Brian T.
87 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01040222507.59
88 rdf:type schema:Person
89 sg:person.01074364450.51 schema:affiliation https://www.grid.ac/institutes/grid.134907.8
90 schema:familyName Mirza
91 schema:givenName Urooj A.
92 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074364450.51
93 rdf:type schema:Person
94 sg:person.01174204721.04 schema:affiliation https://www.grid.ac/institutes/grid.134907.8
95 schema:familyName Haller
96 schema:givenName Ivan
97 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01174204721.04
98 rdf:type schema:Person
99 sg:pub.10.1016/1044-0305(92)85027-h schema:sameAs https://app.dimensions.ai/details/publication/pub.1026841664
100 https://doi.org/10.1016/1044-0305(92)85027-h
101 rdf:type schema:CreativeWork
102 sg:pub.10.1016/1044-0305(94)85066-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043869376
103 https://doi.org/10.1016/1044-0305(94)85066-6
104 rdf:type schema:CreativeWork
105 https://doi.org/10.1002/bms.1200111109 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028733216
106 rdf:type schema:CreativeWork
107 https://doi.org/10.1002/pro.5560020207 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011635341
108 rdf:type schema:CreativeWork
109 https://doi.org/10.1002/rcm.1290030408 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041483579
110 rdf:type schema:CreativeWork
111 https://doi.org/10.1002/rcm.1290030512 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005321207
112 rdf:type schema:CreativeWork
113 https://doi.org/10.1002/rcm.1290071105 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013384703
114 rdf:type schema:CreativeWork
115 https://doi.org/10.1006/meth.1994.1029 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013430864
116 rdf:type schema:CreativeWork
117 https://doi.org/10.1016/0168-1176(90)85071-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029180981
118 rdf:type schema:CreativeWork
119 https://doi.org/10.1021/ac00013a003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1054966007
120 rdf:type schema:CreativeWork
121 https://doi.org/10.1021/ac00014a024 schema:sameAs https://app.dimensions.ai/details/publication/pub.1054966108
122 rdf:type schema:CreativeWork
123 https://doi.org/10.1021/ac00068a020 schema:sameAs https://app.dimensions.ai/details/publication/pub.1054969859
124 rdf:type schema:CreativeWork
125 https://doi.org/10.1021/ac00074a010 schema:sameAs https://app.dimensions.ai/details/publication/pub.1054970301
126 rdf:type schema:CreativeWork
127 https://doi.org/10.1021/ac00106a008 schema:sameAs https://app.dimensions.ai/details/publication/pub.1054972317
128 rdf:type schema:CreativeWork
129 https://doi.org/10.1021/ja00097a055 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055706673
130 rdf:type schema:CreativeWork
131 https://doi.org/10.1073/pnas.83.17.6233 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013056026
132 rdf:type schema:CreativeWork
133 https://doi.org/10.1126/science.1546328 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062490335
134 rdf:type schema:CreativeWork
135 https://doi.org/10.1146/annurev.bi.61.070192.004553 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005942356
136 rdf:type schema:CreativeWork
137 https://www.grid.ac/institutes/grid.134907.8 schema:alternateName Rockefeller University
138 schema:name Mass Spectrometry Laboratory, The Rockefeller University, 1230 York Avenue, New York, New York, USA
139 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...