A genomic dataset of single‐nucleotide polymorphisms generated by ddRAD tag sequencing in Q. petraea (Matt.) Liebl. populations from Central-Eastern Europe ... View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2021-04-19

AUTHORS

Endre Gy. Tóth, Zoltán A. Köbölkuti, Klára Cseke, József D. Kámpel, Roland Takács, Vladimir T. Tomov, Péter Ábrán, Srdjan Stojnic, Erna Vastag, Milan Mataruga, Vanja Daničić, Egzon Tahirukaj, Petar Zhelev, Sasa Orlovic, Attila Benke, Attila Borovics

ABSTRACT

Key messageThis genomic dataset provides highly variable SNP markers from georeferenced natural Quercus petraea (Matt.) Liebl. populations collected in Bulgaria, Hungary, Romania, Serbia, Bosnia and Herzegovina, Kosovo* and Albania. These SNP loci can be used to assess genetic diversity, differentiation, and population structure, and can also be used to detect signatures of selection and local adaptation. The dataset can be accessed at https://doi.org/10.5281/zenodo.3908963/ (Tóth et al.2020). Associated metadata available at https://metadata-afs.nancy.inra.fr/geonetwork/srv/fre/catalog.search#/metadata/b6fee4fa-01e9-44d0-92f5-ad19379f9693. More... »

PAGES

43

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s13595-021-01051-6

DOI

http://dx.doi.org/10.1007/s13595-021-01051-6

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1137309431


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27 Bosnia
28 Bulgaria
29 Central-Eastern Europe
30 Europe
31 Herzegovina
32 Hungary
33 Key messageThis genomic dataset
34 Kosovo
35 Liebl
36 Peninsula
37 Quercus petraea (Matt.) Liebl
38 Romania
39 SNP loci
40 SNP markers
41 SRV
42 Serbia
43 adaptation
44 associated metadata
45 b6fee4fa-01e9
46 catalogue
47 dataset
48 ddRAD tag sequencing
49 differentiation
50 diversity
51 fr/geonetwork/srv
52 genetic diversity
53 genomic datasets
54 geonetwork/srv
55 local adaptation
56 loci
57 markers
58 messageThis genomic dataset
59 metadata
60 natural Quercus petraea (Matt.) Liebl
61 petraea Liebl
62 polymorphism
63 population
64 population structure
65 selection
66 sequencing
67 signatures
68 signatures of selection
69 single nucleotide polymorphisms
70 structure
71 tag sequencing
72 variable SNP markers
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