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    "description": "Key messageForest disturbance affects the within-population distribution of genetic diversity, but not its overall levels, in a tropical pioneer tree species. In particular, clumps of related saplings with impoverished diversity are found in canopy gaps but not under forest cover.ContextForest disturbances can have long-term consequences on the genetic structure of tree populations, because they can alter the demographic properties of the regeneration process and favour some subpopulations/genotypes, both by stochastic processes and by selection. Intermediate disturbances tend to favour species diversity, at least in highly diverse communities, but their effect on intra-specific diversity is unknown.AimsIn this study, we have looked at the genetic consequences of forest disturbance in a stand of the long-lived Neotropical pioneer species, Jacaranda copaia.MethodsThe study site was experimentally logged in 1984, and the canopy gaps generated by the logging were mapped. Seedlings of J. copaia colonised the gaps, as expected, at a higher density than in the surrounding forest. In 2006, we exhaustively sampled all saplings and adult trees available in a 25-ha area. The samples were genotyped at nine microsatellite loci, and the distribution of genetic diversity was inspected by analyses of spatial autocorrelation, automated Bayesian assignment and comparisons of diversity between cohorts by bootstrap (RaBoT).ResultsSpatial autocorrelation was found to extend farther in post-disturbance saplings than in the undisturbed population (100\u00a0m and beyond versus less than 50\u00a0m), and divergent clumps (FST\u2009=\u20090.05) of related genotypes were found; genetic diversity was found to be impoverished in each clump relative to the global population at about half of the loci.ConclusionOverall, our results suggest that forest disturbance has changed the patterns of distribution of genetic diversity, with potential consequences on long-term population viability.", 
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        "publisher": "Springer Nature", 
        "type": "Periodical"
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    "keywords": [
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      "genetic structure", 
      "tropical pioneer tree species", 
      "intra-specific diversity", 
      "long-term population viability", 
      "canopy gaps", 
      "neotropical pioneer species", 
      "spatial genetic structure", 
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      "forest disturbance", 
      "comparison of diversity", 
      "Bayesian assignment", 
      "species diversity", 
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      "microsatellite loci", 
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      "study sites", 
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      "spatial autocorrelation", 
      "global population", 
      "genotypes", 
      "copaia", 
      "demographic properties", 
      "potential consequences", 
      "seedlings", 
      "clumps", 
      "Jacaranda", 
      "population", 
      "forest", 
      "high density", 
      "Guiana", 
      "trees", 
      "stands", 
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      "long-term consequences", 
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      "Key messageForest disturbance", 
      "messageForest disturbance", 
      "related saplings", 
      "ContextForest disturbances", 
      "subpopulations/genotypes", 
      "MethodsThe study site", 
      "ResultsSpatial autocorrelation", 
      "post-disturbance saplings", 
      "divergent clumps", 
      "Jacaranda copaia (Aubl.) D. Don", 
      "copaia (Aubl.) D. Don", 
      "D. Don"
    ], 
    "name": "Life after disturbance (I): changes in the spatial genetic structure of Jacaranda copaia (Aubl.) D. Don (Bignonianceae) after logging in an intensively studied plot in French Guiana", 
    "pagination": "509-516", 
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