The contribution of tef-1 sequences to species delimitation in the Cantharellus cibarius complex in the southeastern USA View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2011-07

AUTHORS

B. Buyck, Valérie Hofstetter

ABSTRACT

This study of the Cantharellus cibarius complex presents three new species for the southeastern USA based on recently collected material, as well as on revisions of type specimens and newly generated sequence data for the protein coding gene tef-1. Cantharellus lewisii sp. nov. is described for a southern species that was hitherto mistaken for the European ‘C. amethysteus’. C. altipes sp. nov. is introduced for a taxon that may correspond to C. cibarius var. longipes Peck. C. tenuithrix sp. nov. is described as the American sister taxon of the European C. cibarius s.s. The current confusing concept of C. lateritius, in contradiction with the original diagnosis, is here stabilized by the choice of a sequenced epitype. Its separation from C. confluens nom. inval. needs additional sampling. Being invalid, further use of the name C. confluens is discouraged. More... »

PAGES

35-46

Journal

TITLE

Fungal Diversity

ISSUE

1

VOLUME

49

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s13225-011-0095-z

DOI

http://dx.doi.org/10.1007/s13225-011-0095-z

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1049251078


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "National Museum of Natural History", 
          "id": "https://www.grid.ac/institutes/grid.410350.3", 
          "name": [
            "D\u00e9partement Syst\u00e9matique et \u00e9volution, UMR7205, Mus\u00e9um National d\u2019Histoire Naturelle, CP39, Rue Buffon 12, 75005, Paris, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Buyck", 
        "givenName": "B.", 
        "id": "sg:person.01010433120.10", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01010433120.10"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Department of plant protection, Agroscope Changins-W\u00e4denswil Research Station ACW, Rte De Duiller, 1260, Nyon, Switzerland"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hofstetter", 
        "givenName": "Val\u00e9rie", 
        "id": "sg:person.01077135736.59", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077135736.59"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.3732/ajb.91.10.1446", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013171899"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3852/mycologia.98.6.937", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017089395"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0953-7562(09)80407-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022723330"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1017/s095375620200641x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028032953"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1017/s095375620200641x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028032953"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s12231-008-9042-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033922253", 
          "https://doi.org/10.1007/s12231-008-9042-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s12231-008-9042-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033922253", 
          "https://doi.org/10.1007/s12231-008-9042-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1017/s0953756203008475", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035630634"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1017/s0953756203008475", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035630634"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bti191", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041460929"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msg028", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044565596"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1365-294x.2003.01732.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044578807"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1017/s0953756299001380", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048979302"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/00275514.1947.12017631", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070439236"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/00275514.1947.12017631", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070439236"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/3759002", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070442558"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/3759354", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070442870"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/3760934", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070444288"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3989/ajbm.2007.v64.i2.178", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1071783685"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/3667194", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1102825527"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2011-07", 
    "datePublishedReg": "2011-07-01", 
    "description": "This study of the Cantharellus cibarius complex presents three new species for the southeastern USA based on recently collected material, as well as on revisions of type specimens and newly generated sequence data for the protein coding gene tef-1. Cantharellus lewisii sp. nov. is described for a southern species that was hitherto mistaken for the European \u2018C. amethysteus\u2019. C. altipes sp. nov. is introduced for a taxon that may correspond to C. cibarius var. longipes Peck. C. tenuithrix sp. nov. is described as the American sister taxon of the European C. cibarius s.s. The current confusing concept of C. lateritius, in contradiction with the original diagnosis, is here stabilized by the choice of a sequenced epitype. Its separation from C. confluens nom. inval. needs additional sampling. Being invalid, further use of the name C. confluens is discouraged.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s13225-011-0095-z", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1023167", 
        "issn": [
          "1560-2745", 
          "1878-9129"
        ], 
        "name": "Fungal Diversity", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "49"
      }
    ], 
    "name": "The contribution of tef-1 sequences to species delimitation in the Cantharellus cibarius complex in the southeastern USA", 
    "pagination": "35-46", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "ea9f6f63ba45c8d78ce25e05c86d43d6e030ebec450c812efe7ded6853b078c1"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s13225-011-0095-z"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1049251078"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s13225-011-0095-z", 
      "https://app.dimensions.ai/details/publication/pub.1049251078"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T15:54", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8664_00000524.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007%2Fs13225-011-0095-z"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s13225-011-0095-z'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s13225-011-0095-z'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s13225-011-0095-z'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s13225-011-0095-z'


 

This table displays all metadata directly associated to this object as RDF triples.

119 TRIPLES      21 PREDICATES      43 URIs      19 LITERALS      7 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s13225-011-0095-z schema:about anzsrc-for:06
2 anzsrc-for:0604
3 schema:author N6c6c438ba4fc42ab9c856352f9959474
4 schema:citation sg:pub.10.1007/s12231-008-9042-7
5 https://doi.org/10.1016/s0953-7562(09)80407-3
6 https://doi.org/10.1017/s095375620200641x
7 https://doi.org/10.1017/s0953756203008475
8 https://doi.org/10.1017/s0953756299001380
9 https://doi.org/10.1046/j.1365-294x.2003.01732.x
10 https://doi.org/10.1080/00275514.1947.12017631
11 https://doi.org/10.1093/bioinformatics/bti191
12 https://doi.org/10.1093/molbev/msg028
13 https://doi.org/10.2307/3667194
14 https://doi.org/10.2307/3759002
15 https://doi.org/10.2307/3759354
16 https://doi.org/10.2307/3760934
17 https://doi.org/10.3732/ajb.91.10.1446
18 https://doi.org/10.3852/mycologia.98.6.937
19 https://doi.org/10.3989/ajbm.2007.v64.i2.178
20 schema:datePublished 2011-07
21 schema:datePublishedReg 2011-07-01
22 schema:description This study of the Cantharellus cibarius complex presents three new species for the southeastern USA based on recently collected material, as well as on revisions of type specimens and newly generated sequence data for the protein coding gene tef-1. Cantharellus lewisii sp. nov. is described for a southern species that was hitherto mistaken for the European ‘C. amethysteus’. C. altipes sp. nov. is introduced for a taxon that may correspond to C. cibarius var. longipes Peck. C. tenuithrix sp. nov. is described as the American sister taxon of the European C. cibarius s.s. The current confusing concept of C. lateritius, in contradiction with the original diagnosis, is here stabilized by the choice of a sequenced epitype. Its separation from C. confluens nom. inval. needs additional sampling. Being invalid, further use of the name C. confluens is discouraged.
23 schema:genre research_article
24 schema:inLanguage en
25 schema:isAccessibleForFree false
26 schema:isPartOf N62f80b94cf3943dd937149eae021206e
27 N797180b8ae814f90991974c1a1498707
28 sg:journal.1023167
29 schema:name The contribution of tef-1 sequences to species delimitation in the Cantharellus cibarius complex in the southeastern USA
30 schema:pagination 35-46
31 schema:productId N09fcaffa26824645b5ef5a21a5c9a94e
32 N2cf80f16cb6c48239e07a09f035d6b57
33 Nf4a2e896338147f3aea5d4aa48634fcb
34 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049251078
35 https://doi.org/10.1007/s13225-011-0095-z
36 schema:sdDatePublished 2019-04-10T15:54
37 schema:sdLicense https://scigraph.springernature.com/explorer/license/
38 schema:sdPublisher N4ddd841c9cd24b1b90b52c9b80a390cd
39 schema:url http://link.springer.com/10.1007%2Fs13225-011-0095-z
40 sgo:license sg:explorer/license/
41 sgo:sdDataset articles
42 rdf:type schema:ScholarlyArticle
43 N09fcaffa26824645b5ef5a21a5c9a94e schema:name dimensions_id
44 schema:value pub.1049251078
45 rdf:type schema:PropertyValue
46 N2cf80f16cb6c48239e07a09f035d6b57 schema:name doi
47 schema:value 10.1007/s13225-011-0095-z
48 rdf:type schema:PropertyValue
49 N4ddd841c9cd24b1b90b52c9b80a390cd schema:name Springer Nature - SN SciGraph project
50 rdf:type schema:Organization
51 N62f80b94cf3943dd937149eae021206e schema:volumeNumber 49
52 rdf:type schema:PublicationVolume
53 N6c6c438ba4fc42ab9c856352f9959474 rdf:first sg:person.01010433120.10
54 rdf:rest Nc324df1eb7da4fc3bb92b837438627bb
55 N797180b8ae814f90991974c1a1498707 schema:issueNumber 1
56 rdf:type schema:PublicationIssue
57 N839ee749430f46349e55c1e0ad1e70af schema:name Department of plant protection, Agroscope Changins-Wädenswil Research Station ACW, Rte De Duiller, 1260, Nyon, Switzerland
58 rdf:type schema:Organization
59 Nc324df1eb7da4fc3bb92b837438627bb rdf:first sg:person.01077135736.59
60 rdf:rest rdf:nil
61 Nf4a2e896338147f3aea5d4aa48634fcb schema:name readcube_id
62 schema:value ea9f6f63ba45c8d78ce25e05c86d43d6e030ebec450c812efe7ded6853b078c1
63 rdf:type schema:PropertyValue
64 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
65 schema:name Biological Sciences
66 rdf:type schema:DefinedTerm
67 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
68 schema:name Genetics
69 rdf:type schema:DefinedTerm
70 sg:journal.1023167 schema:issn 1560-2745
71 1878-9129
72 schema:name Fungal Diversity
73 rdf:type schema:Periodical
74 sg:person.01010433120.10 schema:affiliation https://www.grid.ac/institutes/grid.410350.3
75 schema:familyName Buyck
76 schema:givenName B.
77 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01010433120.10
78 rdf:type schema:Person
79 sg:person.01077135736.59 schema:affiliation N839ee749430f46349e55c1e0ad1e70af
80 schema:familyName Hofstetter
81 schema:givenName Valérie
82 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077135736.59
83 rdf:type schema:Person
84 sg:pub.10.1007/s12231-008-9042-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033922253
85 https://doi.org/10.1007/s12231-008-9042-7
86 rdf:type schema:CreativeWork
87 https://doi.org/10.1016/s0953-7562(09)80407-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022723330
88 rdf:type schema:CreativeWork
89 https://doi.org/10.1017/s095375620200641x schema:sameAs https://app.dimensions.ai/details/publication/pub.1028032953
90 rdf:type schema:CreativeWork
91 https://doi.org/10.1017/s0953756203008475 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035630634
92 rdf:type schema:CreativeWork
93 https://doi.org/10.1017/s0953756299001380 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048979302
94 rdf:type schema:CreativeWork
95 https://doi.org/10.1046/j.1365-294x.2003.01732.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1044578807
96 rdf:type schema:CreativeWork
97 https://doi.org/10.1080/00275514.1947.12017631 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070439236
98 rdf:type schema:CreativeWork
99 https://doi.org/10.1093/bioinformatics/bti191 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041460929
100 rdf:type schema:CreativeWork
101 https://doi.org/10.1093/molbev/msg028 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044565596
102 rdf:type schema:CreativeWork
103 https://doi.org/10.2307/3667194 schema:sameAs https://app.dimensions.ai/details/publication/pub.1102825527
104 rdf:type schema:CreativeWork
105 https://doi.org/10.2307/3759002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070442558
106 rdf:type schema:CreativeWork
107 https://doi.org/10.2307/3759354 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070442870
108 rdf:type schema:CreativeWork
109 https://doi.org/10.2307/3760934 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070444288
110 rdf:type schema:CreativeWork
111 https://doi.org/10.3732/ajb.91.10.1446 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013171899
112 rdf:type schema:CreativeWork
113 https://doi.org/10.3852/mycologia.98.6.937 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017089395
114 rdf:type schema:CreativeWork
115 https://doi.org/10.3989/ajbm.2007.v64.i2.178 schema:sameAs https://app.dimensions.ai/details/publication/pub.1071783685
116 rdf:type schema:CreativeWork
117 https://www.grid.ac/institutes/grid.410350.3 schema:alternateName National Museum of Natural History
118 schema:name Département Systématique et évolution, UMR7205, Muséum National d’Histoire Naturelle, CP39, Rue Buffon 12, 75005, Paris, France
119 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...