Archaeogenetic study of prehistoric rice remains from Thailand and India: evidence of early japonica in South and Southeast Asia View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-09

AUTHORS

Cristina Cobo Castillo, Katsunori Tanaka, Yo-Ichiro Sato, Ryuji Ishikawa, Bérénice Bellina, Charles Higham, Nigel Chang, Rabi Mohanty, Mukund Kajale, Dorian Q Fuller

ABSTRACT

We report a successful extraction and sequencing of ancient DNA from carbonized rice grains (Oryza sativa) from six archaeological sites, including two from India and four from Thailand, ranging in age from ca. 2500 to 1500 BP. In total, 221 archaeological grains were processed by PCR amplification and primary-targeted fragments were sequenced for comparison with modern sequences generated from 112 modern rice populations, including crop and wild varieties. Our results include the genetic sequences from both the chloroplast and the nuclear genomes, based on four markers from the chloroplast and six from the nuclear genome. These markers allow differentiation of indica rice from japonica rice, the two major subspecies of Asian rice (O. sativa) considered to have separate geographical origins. One nuclear marker differentiates tropical and temperate forms of subspecies japonica. Other markers relate to phenotypic variation selected for under domestication, such as non-shattering, grain stickiness (waxy starch) and pericarp colour. Recovery and identification of sequences from nuclear markers was generally poor, whereas recovery of chloroplast sequences was successful, with at least one of four markers recovered in 61 % of archaeological grains. This allowed for successful differentiation of indica or japonica subspecies variety, with japonica identified in all the Thai material and a mixture of indica and japonica chloroplasts in the two Indian assemblages. Rice subspecies was also assessed through conventional archaeobotanical methods relying on grain metrics, based on measurements from 13 modern populations and 499 archaeological grains. Grain metrics also suggest a predominance of japonica-type grains in the Southeast Asian sites and a mixture of japonica and indica in the Indian sites with indica in the minority. The similar results of grain metrics and ancient DNA (aDNA) affirm that grain measurements have some degree of reliability in rice subspecies identification. The study also highlights the great potential of ancient DNA recovery from archaeological rice. The data generated in the present study adds support to the model of rice evolution that includes hybridization between japonica and proto-indica. More... »

PAGES

523-543

References to SciGraph publications

  • 2010-06. The evolution of rice: molecular vignettes on its origins and spread in ARCHAEOLOGICAL AND ANTHROPOLOGICAL SCIENCES
  • 2002-05. Different maternal origins of Japanese lowland and upland rice populations in THEORETICAL AND APPLIED GENETICS
  • 2011-12. Rice in Thailand: The Archaeobotanical Contribution in RICE
  • 2010-06. Consilience of genetics and archaeobotany in the entangled history of rice in ARCHAEOLOGICAL AND ANTHROPOLOGICAL SCIENCES
  • 2009-02. The fragrance (fgr) gene in natural populations of wild rice (Oryza rufipogon Griff.) in GENETIC RESOURCES AND CROP EVOLUTION
  • 2004-12. Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.) in MOLECULAR GENETICS AND GENOMICS
  • 2014. DNA Extraction from Rice Endosperm (Including a Protocol for Extraction of DNA from Ancient Seed Samples) in CEREAL GENOMICS
  • 2013-04. OsLG1 regulates a closed panicle trait in domesticated rice in NATURE GENETICS
  • 2007-11. Fine mapping and candidate gene analysis of purple pericarp gene Pb in rice (Oryza sativa L.) in SCIENCE BULLETIN
  • 2001. Cloning and characterization of two secreted acid phosphatases from rice calli in PLANT NUTRITION
  • 2008-11. Japonica rice carried to, not from, Southeast Asia in NATURE GENETICS
  • 2007-06. Origin of seed shattering in rice (Oryza sativa L.) in PLANTA
  • 2011-12. Pathways to Asian Civilizations: Tracing the Origins and Spread of Rice and Rice Cultures in RICE
  • 1997-03. Identification of two types of differentiation in cultivated rice (Oryza sativa L.) detected by polymorphism of isozymes and hybrid sterility in EUPHYTICA
  • 2010-06. Rice archaeological remains and the possibility of DNA archaeology: examples from Yayoi and Heian periods of Northern Japan in ARCHAEOLOGICAL AND ANTHROPOLOGICAL SCIENCES
  • 2008-03. Ancient plant DNA in archaeobotany in VEGETATION HISTORY AND ARCHAEOBOTANY
  • 2013-12. Evolution of crop species: genetics of domestication and diversification in NATURE REVIEWS GENETICS
  • 2002-09. Origin of cytoplasm substituted rice cultivars found in Japan in THEORETICAL AND APPLIED GENETICS
  • 2009-02. The nature of selection during plant domestication in NATURE
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    http://scigraph.springernature.com/pub.10.1007/s12520-015-0236-5

    DOI

    http://dx.doi.org/10.1007/s12520-015-0236-5

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