Pedigree Reconstruction with Genome-Wide Markers in Potato View Full Text


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Article Info

DATE

2017-04

AUTHORS

Jeffrey B. Endelman, Cari A. Schmitz Carley, David S. Douches, Joseph J. Coombs, Benoit Bizimungu, Walter S. De Jong, Kathleen G. Haynes, David G. Holm, J. Creighton Miller, Richard G. Novy, Jiwan P. Palta, David L. Parish, Gregory A. Porter, Vidyasagar R. Sathuvalli, Asunta L. Thompson, G. Craig Yencho

ABSTRACT

Reliable pedigree information facilitates a scientific approach to breeding, but errors can be introduced in many stages of a breeding program. Our objective was to use single nucleotide polymorphisms (SNPs) to check the pedigree records of elite North American potato germplasm. A population of 719 tetraploids was genotyped with an Infinium SNP array, yielding 5063 high-quality markers. Based on pedigree records, the dataset contained 198 parent-offspring trios, of which 182 were consistent with the marker data. For 13 of the 16 trios with a pedigree error, the true parent was identified in the population. By comparing the additive relationship matrix calculated from pedigree with the genetic distance calculated from markers, an additional 24 pedigree modifications were proposed, including the paternity of several varieties developed with bulk pollen. To ensure accurate pedigree records are published in the future, we recommend that new varieties be SNP genotyped and checked against this dataset. More... »

PAGES

184-190

References to SciGraph publications

  • 1991-08. Isozyme and plastid DNA assessment of pedigrees of nineteenth century potato cultivars in THEORETICAL AND APPLIED GENETICS
  • 2008-04. Development of STS Markers for Selection of Extreme Resistance (Rysto) to PVY and Maternal Pedigree Analysis of Extremely Resistant Cultivars in AMERICAN JOURNAL OF POTATO RESEARCH
  • 2017-04. Automated tetraploid genotype calling by hierarchical clustering in THEORETICAL AND APPLIED GENETICS
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  • 2012-08. “AmaRosa,” a Red Skinned, Red Fleshed Fingerling with High Phytonutrient Value in AMERICAN JOURNAL OF POTATO RESEARCH
  • 2007-01. An Online Potato Pedigree Database Resource in POTATO RESEARCH
  • 2015-03. Investigation and Development of Potato Parentage Analysis Methods Using Multiplexed SSR Fingerprinting in POTATO RESEARCH
  • 1991-09. Inheritance of anthocyanin pigmentation in the cultivated potato: A critical review in AMERICAN JOURNAL OF POTATO RESEARCH
  • 1991-11. Electrophoretic characterization of North American potato cultivars in AMERICAN JOURNAL OF POTATO RESEARCH
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  • 2014-04. Improving the analysis of low heritability complex traits for enhanced genetic gain in potato in THEORETICAL AND APPLIED GENETICS
  • 2012-08. Purple Pelisse: A Specialty ‘Fingerling’ Potato with Purple Skin and Flesh and Medium Specific Gravity in AMERICAN JOURNAL OF POTATO RESEARCH
  • 2016-05. Genetic mapping with an inbred line-derived F2 population in potato in THEORETICAL AND APPLIED GENETICS
  • 2011-12. Single nucleotide polymorphism discovery in elite north american potato germplasm in BMC GENOMICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s12230-016-9556-y

    DOI

    http://dx.doi.org/10.1007/s12230-016-9556-y

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1045864012


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    RDF/XML is a standard XML format for linked data.

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