Ontology type: schema:ScholarlyArticle Open Access: True
2014-05
AUTHORSE. Lacunza, M. E. Rabassa, R. Canzoneri, M. Pellon-Maison, M. V. Croce, C. M. Aldaz, M. C. Abba
ABSTRACTRhomboid domain containing 2 (RHBDD2) was previously observed overexpressed and amplified in breast cancer samples. In order to identify biological pathways modulated by RHBDD2, gene expression profiles of RHBDD2 silenced breast cancer cells were analyzed using whole genome human microarray. Among the statistically significant overrepresented biological processes, we found protein metabolism—with the associated ontological terms folding , ubiquitination, and proteosomal degradation—cell death, cell cycle, and oxidative phosphorylation. In addition, we performed an in silico analysis searching for RHBDD2 co-expressed genes in several human tissues. Interestingly, the functional analysis of these genes showed similar results to those obtained with the microarray data, with negative regulation of protein metabolism and oxidative phosphorylation as the most enriched gene ontology terms. These data led us to hypothesize that RHBDD2 might be involved in endoplasmic reticulum (ER) stress response. Thus, we specifically analyzed the unfolding protein response (UPR) of the ER stress process. We used a lentivirus-based approach for stable silencing of RHBDD2 mRNA in the T47D breast cancer cell line, and we examined the transcriptional consequences on UPR genes as well as the phenotypic effects on migration and proliferation processes. By employing dithiothreitol as an UPR inducer, we observed that cells with silenced RHBDD2 showed increased expression of ATF6, IRE1, PERK, CRT, BiP, ATF4, and CHOP (p <0.01). We also observed that RHBDD2 silencing inhibited colony formation and decreased cell migration. Based on these studies, we hypothesize that RHBDD2 overexpression in breast cancer could represent an adaptive phenotype to the stressful tumor microenvironment by modulating the ER stress response. More... »
PAGES379-388
http://scigraph.springernature.com/pub.10.1007/s12192-013-0466-3
DOIhttp://dx.doi.org/10.1007/s12192-013-0466-3
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1027193113
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/24078384
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Breast Neoplasms",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Line, Tumor",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Movement",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Proliferation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Endoplasmic Reticulum Stress",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Female",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Profiling",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Regulation, Neoplastic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Ontology",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Silencing",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Neoplasm Proteins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phenotype",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "RNA, Small Interfering",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Signal Transduction",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Transcription, Genetic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Unfolded Protein Response",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "National University of La Plata",
"id": "https://www.grid.ac/institutes/grid.9499.d",
"name": [
"Centro de Investigaciones Inmunol\u00f3gicas B\u00e1sicas y Aplicadas, Facultad de Ciencias M\u00e9dicas, Universidad Nacional de La Plata, La Plata, Argentina"
],
"type": "Organization"
},
"familyName": "Lacunza",
"givenName": "E.",
"id": "sg:person.01345434622.51",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01345434622.51"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National University of La Plata",
"id": "https://www.grid.ac/institutes/grid.9499.d",
"name": [
"Centro de Investigaciones Inmunol\u00f3gicas B\u00e1sicas y Aplicadas, Facultad de Ciencias M\u00e9dicas, Universidad Nacional de La Plata, La Plata, Argentina"
],
"type": "Organization"
},
"familyName": "Rabassa",
"givenName": "M. E.",
"id": "sg:person.01235302420.03",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01235302420.03"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National University of La Plata",
"id": "https://www.grid.ac/institutes/grid.9499.d",
"name": [
"Centro de Investigaciones Inmunol\u00f3gicas B\u00e1sicas y Aplicadas, Facultad de Ciencias M\u00e9dicas, Universidad Nacional de La Plata, La Plata, Argentina"
],
"type": "Organization"
},
"familyName": "Canzoneri",
"givenName": "R.",
"id": "sg:person.0622030522.32",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0622030522.32"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National University of La Plata",
"id": "https://www.grid.ac/institutes/grid.9499.d",
"name": [
"Instituto de Investigaciones Bioqu\u00edmicas de La Plata, Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas, Facultad de Ciencias M\u00e9dicas, Universidad Nacional de La Plata, La Plata, Argentina"
],
"type": "Organization"
},
"familyName": "Pellon-Maison",
"givenName": "M.",
"id": "sg:person.0605067665.15",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605067665.15"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National University of La Plata",
"id": "https://www.grid.ac/institutes/grid.9499.d",
"name": [
"Centro de Investigaciones Inmunol\u00f3gicas B\u00e1sicas y Aplicadas, Facultad de Ciencias M\u00e9dicas, Universidad Nacional de La Plata, La Plata, Argentina"
],
"type": "Organization"
},
"familyName": "Croce",
"givenName": "M. V.",
"id": "sg:person.01126334742.29",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01126334742.29"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "The University of Texas MD Anderson Cancer Center",
"id": "https://www.grid.ac/institutes/grid.240145.6",
"name": [
"Department of Molecular Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Smithville, TX, USA"
],
"type": "Organization"
},
"familyName": "Aldaz",
"givenName": "C. M.",
"id": "sg:person.01157235247.94",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01157235247.94"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National University of La Plata",
"id": "https://www.grid.ac/institutes/grid.9499.d",
"name": [
"Centro de Investigaciones Inmunol\u00f3gicas B\u00e1sicas y Aplicadas, Facultad de Ciencias M\u00e9dicas, Universidad Nacional de La Plata, La Plata, Argentina"
],
"type": "Organization"
},
"familyName": "Abba",
"givenName": "M. C.",
"id": "sg:person.0776634066.02",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0776634066.02"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/nature01633",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000775774",
"https://doi.org/10.1038/nature01633"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature01633",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000775774",
"https://doi.org/10.1038/nature01633"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1097-2765(03)00181-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000878995"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s13277-012-0503-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006112854",
"https://doi.org/10.1007/s13277-012-0503-3"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0092-8674(01)00611-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010981516"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0053845",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013483708"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbrc.2012.03.150",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014734204"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1096/fj.08-112771",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015231999"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbamem.2013.03.025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017438726"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1242/dmm.000109",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019322500"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/bit.23282",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019980849"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.7.6.961",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020720975"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.bjc.6605365",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020823593",
"https://doi.org/10.1038/sj.bjc.6605365"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.m509110200",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022194491"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1083/jcb.200507057",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023208751"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1242/jcs.00408",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024211247"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2009-10-12-r139",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025043100",
"https://doi.org/10.1186/gb-2009-10-12-r139"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cell.2006.06.021",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027095985"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ajhg.2011.12.008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028644660"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1213738110",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028972256"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nsmb.2111",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030372973",
"https://doi.org/10.1038/nsmb.2111"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1158/1541-7786.mcr-07-0055",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030486786"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.genet.42.110807.091628",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030890837"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1152/physrev.00027.2011",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033128883"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2012.06.008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033194616"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00441-012-1542-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033834129",
"https://doi.org/10.1007/s00441-012-1542-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00441-012-1542-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033834129",
"https://doi.org/10.1007/s00441-012-1542-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1756-8722-4-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035943063",
"https://doi.org/10.1186/1756-8722-4-8"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nprot.2008.211",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039987283",
"https://doi.org/10.1038/nprot.2008.211"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/embor.2011.50",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045805917"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.febslet.2004.07.055",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046471558"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1038/sj.embor.7400779",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047187593"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbadis.2009.07.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048207264"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btg282",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050790529"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0305-7372(03)00081-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051567627"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0305-7372(03)00081-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051567627"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3892/ijo.2012.1506",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1071512829"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2144/03342mt01",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1075245738"
],
"type": "CreativeWork"
}
],
"datePublished": "2014-05",
"datePublishedReg": "2014-05-01",
"description": "Rhomboid domain containing 2 (RHBDD2) was previously observed overexpressed and amplified in breast cancer samples. In order to identify biological pathways modulated by RHBDD2, gene expression profiles of RHBDD2 silenced breast cancer cells were analyzed using whole genome human microarray. Among the statistically significant overrepresented biological processes, we found protein metabolism\u2014with the associated ontological terms folding , ubiquitination, and proteosomal degradation\u2014cell death, cell cycle, and oxidative phosphorylation. In addition, we performed an in silico analysis searching for RHBDD2 co-expressed genes in several human tissues. Interestingly, the functional analysis of these genes showed similar results to those obtained with the microarray data, with negative regulation of protein metabolism and oxidative phosphorylation as the most enriched gene ontology terms. These data led us to hypothesize that RHBDD2 might be involved in endoplasmic reticulum (ER) stress response. Thus, we specifically analyzed the unfolding protein response (UPR) of the ER stress process. We used a lentivirus-based approach for stable silencing of RHBDD2 mRNA in the T47D breast cancer cell line, and we examined the transcriptional consequences on UPR genes as well as the phenotypic effects on migration and proliferation processes. By employing dithiothreitol as an UPR inducer, we observed that cells with silenced RHBDD2 showed increased expression of ATF6, IRE1, PERK, CRT, BiP, ATF4, and CHOP (p <0.01). We also observed that RHBDD2 silencing inhibited colony formation and decreased cell migration. Based on these studies, we hypothesize that RHBDD2 overexpression in breast cancer could represent an adaptive phenotype to the stressful tumor microenvironment by modulating the ER stress response.",
"genre": "research_article",
"id": "sg:pub.10.1007/s12192-013-0466-3",
"inLanguage": [
"en"
],
"isAccessibleForFree": true,
"isPartOf": [
{
"id": "sg:journal.1115743",
"issn": [
"1355-8145",
"1466-1268"
],
"name": "Cell Stress and Chaperones",
"type": "Periodical"
},
{
"issueNumber": "3",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "19"
}
],
"name": "Identification of signaling pathways modulated by RHBDD2 in breast cancer cells: a link to the unfolded protein response",
"pagination": "379-388",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"8189585863ba84ada75dc823cd337d59536cf1bd2dc9128f9e7e2d28a865c5f2"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"24078384"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"9610925"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s12192-013-0466-3"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1027193113"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s12192-013-0466-3",
"https://app.dimensions.ai/details/publication/pub.1027193113"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T23:27",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8693_00000522.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007%2Fs12192-013-0466-3"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s12192-013-0466-3'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s12192-013-0466-3'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s12192-013-0466-3'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s12192-013-0466-3'
This table displays all metadata directly associated to this object as RDF triples.
296 TRIPLES
21 PREDICATES
81 URIs
38 LITERALS
26 BLANK NODES