Phylogenetic diversity of Mesorhizobium in chickpea View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-06

AUTHORS

Dong Hyun Kim, Mayank Kaashyap, Abhishek Rathore, Roma R Das, Swathi Parupalli, Hari D Upadhyaya, S Gopalakrishnan, Pooran M Gaur, Sarvjeet Singh, Jagmeet Kaur, Mohammad Yasin, Rajeev K Varshney

ABSTRACT

Crop domestication, in general, has reduced genetic diversity in cultivated gene pool of chickpea (Cicer arietinum) as compared with wild species (C. reticulatum, C. bijugum). To explore impact of domestication on symbiosis, 10 accessions of chickpeas, including 4 accessions of C. arietinum, and 3 accessions of each of C. reticulatum and C. bijugum species, were selected and DNAs were extracted from their nodules. To distinguish chickpea symbiont, preliminary sequences analysis was attempted with 9 genes (16S rRNA, atpD, dnaJ, glnA, gyrB, nifH, nifK, nodD and recA) of which 3 genes (gyrB, nifK and nodD) were selected based on sufficient sequence diversity for further phylogenetic analysis. Phylogenetic analysis and sequence diversity for 3 genes demonstrated that sequences from C. reticulatum were more diverse. Nodule occupancy by dominant symbiont also indicated that C. reticulatum (60 percent) could have more various symbionts than cultivated chickpea (80 percent). The study demonstrated that wild chickpeas (C. reticulatum) could be used for selecting more diverse symbionts in the field conditions and it implies that chickpea domestication affected symbiosis negatively in addition to reducing genetic diversity. More... »

PAGES

513-517

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s12038-014-9429-9

DOI

http://dx.doi.org/10.1007/s12038-014-9429-9

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1022010949

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/24845514


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Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

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curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s12038-014-9429-9'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s12038-014-9429-9'

Turtle is a human-readable linked data format.

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RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s12038-014-9429-9'


 

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