Responsiveness and Adaptation to Salt Stress of the REDOX-RESPONSIVE TRANSCRIPTION FACTOR 1 (RRTF1) Gene are Controlled by its Promoter View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2019-04

AUTHORS

Elham R. S. Soliman, Peter Meyer

ABSTRACT

The REDOX-RESPONSIVE TRANSCRIPTION FACTOR 1 (RRTF1) gene encodes a member of the ERF/AP2 transcription factor family involved in redox homeostasis. The RRTF1 gene shows tissue-specific responsiveness to various abiotic stress treatments including a response to salt stress in roots. An interesting feature of this response is an adaptation phase that follows its activation, when promoter levels revert to a base line level, even if salt stress is maintained. It is unclear if adaption is controlled by a switch in promoter activity or by changes in transcript levels. Here we show that the RRTF1 promoter is sufficient for the control of both activation and adaptation to salt stress. As constitutive expression of RRTF1 turned out to be detrimental to the plant, we propose that promoter-regulated adaptation evolved as a protection mechanism to balance the beneficial effects of short-term gene activation and the detrimental effects of long-term gene expression. More... »

PAGES

254-260

Journal

TITLE

Molecular Biotechnology

ISSUE

4

VOLUME

61

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s12033-019-00155-9

DOI

http://dx.doi.org/10.1007/s12033-019-00155-9

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1111982889

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30734200


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Helwan University", 
          "id": "https://www.grid.ac/institutes/grid.412093.d", 
          "name": [
            "Botany and Microbiology department, Faculty of Science, Helwan University, Cairo, Egypt"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Soliman", 
        "givenName": "Elham R. S.", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Leeds", 
          "id": "https://www.grid.ac/institutes/grid.9909.9", 
          "name": [
            "Center for Plant Sciences, University of Leeds, LS2 9JT, Leeds, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Meyer", 
        "givenName": "Peter", 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1101/gad.1231804", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1003418073"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/tpj.12306", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007442204"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1365-313x.1998.00343.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013777935"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1365-313x.2007.03052.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017080796"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.108.128488", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020341522"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkg041", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022714883"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.0608258103", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024865754"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1365-313x.2012.05051.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026378886"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/meth.2001.1262", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027621591"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/meth.2001.1262", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027621591"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.cell.2005.11.035", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029082447"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.1113666109", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032009996"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3389/fmicb.2016.01329", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035174930"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2005-6-6-r51", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044616441", 
          "https://doi.org/10.1186/gb-2005-6-6-r51"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0040203", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046973301"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.104.046367", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048724335"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/tpj.12159", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052777578"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2174/1389202917666160520103914", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1069178847"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1075071608", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1075259843", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.16.01933", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1079403070"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13059-017-1263-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1086319949", 
          "https://doi.org/10.1186/s13059-017-1263-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13059-017-1263-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1086319949", 
          "https://doi.org/10.1186/s13059-017-1263-6"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2019-04", 
    "datePublishedReg": "2019-04-01", 
    "description": "The REDOX-RESPONSIVE TRANSCRIPTION FACTOR 1 (RRTF1) gene encodes a member of the ERF/AP2 transcription factor family involved in redox homeostasis. The RRTF1 gene shows tissue-specific responsiveness to various abiotic stress treatments including a response to salt stress in roots. An interesting feature of this response is an adaptation phase that follows its activation, when promoter levels revert to a base line level, even if salt stress is maintained. It is unclear if adaption is controlled by a switch in promoter activity or by changes in transcript levels. Here we show that the RRTF1 promoter is sufficient for the control of both activation and adaptation to salt stress. As constitutive expression of RRTF1 turned out to be detrimental to the plant, we propose that promoter-regulated adaptation evolved as a protection mechanism to balance the beneficial effects of short-term gene activation and the detrimental effects of long-term gene expression.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s12033-019-00155-9", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1106201", 
        "issn": [
          "1073-6085", 
          "1559-0305"
        ], 
        "name": "Molecular Biotechnology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "4", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "61"
      }
    ], 
    "name": "Responsiveness and Adaptation to Salt Stress of the REDOX-RESPONSIVE TRANSCRIPTION FACTOR 1 (RRTF1) Gene are Controlled by its Promoter", 
    "pagination": "254-260", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "ee6a90d9534b8bc2076153fb32bd38a5bd7fb115183d5036cc735e103c624104"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "30734200"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "9423533"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s12033-019-00155-9"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1111982889"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s12033-019-00155-9", 
      "https://app.dimensions.ai/details/publication/pub.1111982889"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T10:19", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000348_0000000348/records_54325_00000002.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1007%2Fs12033-019-00155-9"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s12033-019-00155-9'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s12033-019-00155-9'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s12033-019-00155-9'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s12033-019-00155-9'


 

This table displays all metadata directly associated to this object as RDF triples.

140 TRIPLES      21 PREDICATES      50 URIs      21 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s12033-019-00155-9 schema:about anzsrc-for:06
2 anzsrc-for:0604
3 schema:author Nb1463648e5604e059e7a98dff7510871
4 schema:citation sg:pub.10.1186/gb-2005-6-6-r51
5 sg:pub.10.1186/s13059-017-1263-6
6 https://app.dimensions.ai/details/publication/pub.1075071608
7 https://app.dimensions.ai/details/publication/pub.1075259843
8 https://doi.org/10.1006/meth.2001.1262
9 https://doi.org/10.1016/j.cell.2005.11.035
10 https://doi.org/10.1046/j.1365-313x.1998.00343.x
11 https://doi.org/10.1073/pnas.0608258103
12 https://doi.org/10.1073/pnas.1113666109
13 https://doi.org/10.1093/nar/gkg041
14 https://doi.org/10.1101/gad.1231804
15 https://doi.org/10.1104/pp.104.046367
16 https://doi.org/10.1104/pp.108.128488
17 https://doi.org/10.1104/pp.16.01933
18 https://doi.org/10.1111/j.1365-313x.2007.03052.x
19 https://doi.org/10.1111/j.1365-313x.2012.05051.x
20 https://doi.org/10.1111/tpj.12159
21 https://doi.org/10.1111/tpj.12306
22 https://doi.org/10.1371/journal.pone.0040203
23 https://doi.org/10.2174/1389202917666160520103914
24 https://doi.org/10.3389/fmicb.2016.01329
25 schema:datePublished 2019-04
26 schema:datePublishedReg 2019-04-01
27 schema:description The REDOX-RESPONSIVE TRANSCRIPTION FACTOR 1 (RRTF1) gene encodes a member of the ERF/AP2 transcription factor family involved in redox homeostasis. The RRTF1 gene shows tissue-specific responsiveness to various abiotic stress treatments including a response to salt stress in roots. An interesting feature of this response is an adaptation phase that follows its activation, when promoter levels revert to a base line level, even if salt stress is maintained. It is unclear if adaption is controlled by a switch in promoter activity or by changes in transcript levels. Here we show that the RRTF1 promoter is sufficient for the control of both activation and adaptation to salt stress. As constitutive expression of RRTF1 turned out to be detrimental to the plant, we propose that promoter-regulated adaptation evolved as a protection mechanism to balance the beneficial effects of short-term gene activation and the detrimental effects of long-term gene expression.
28 schema:genre research_article
29 schema:inLanguage en
30 schema:isAccessibleForFree false
31 schema:isPartOf N0fc414e66f314503ba45e154ab32f9e6
32 Nb6dbec59ef0b4f2e83887cc744ee7b39
33 sg:journal.1106201
34 schema:name Responsiveness and Adaptation to Salt Stress of the REDOX-RESPONSIVE TRANSCRIPTION FACTOR 1 (RRTF1) Gene are Controlled by its Promoter
35 schema:pagination 254-260
36 schema:productId N143698e1d8aa4d9484a298ed5d887dd0
37 N2bff5be5047d42eca4cced9c972194bd
38 N5a82d9d4f99a4633b88229243228afd4
39 N8259fdb15f3a402abf6530d4e81f9c5c
40 N9837b1dbe11e431f9055a937383231db
41 schema:sameAs https://app.dimensions.ai/details/publication/pub.1111982889
42 https://doi.org/10.1007/s12033-019-00155-9
43 schema:sdDatePublished 2019-04-11T10:19
44 schema:sdLicense https://scigraph.springernature.com/explorer/license/
45 schema:sdPublisher N38343e516da94720ae98b53dd2af0d41
46 schema:url https://link.springer.com/10.1007%2Fs12033-019-00155-9
47 sgo:license sg:explorer/license/
48 sgo:sdDataset articles
49 rdf:type schema:ScholarlyArticle
50 N0fc414e66f314503ba45e154ab32f9e6 schema:volumeNumber 61
51 rdf:type schema:PublicationVolume
52 N143698e1d8aa4d9484a298ed5d887dd0 schema:name dimensions_id
53 schema:value pub.1111982889
54 rdf:type schema:PropertyValue
55 N17ba2924a386484a83c24f43e120f329 schema:affiliation https://www.grid.ac/institutes/grid.412093.d
56 schema:familyName Soliman
57 schema:givenName Elham R. S.
58 rdf:type schema:Person
59 N2bff5be5047d42eca4cced9c972194bd schema:name doi
60 schema:value 10.1007/s12033-019-00155-9
61 rdf:type schema:PropertyValue
62 N38343e516da94720ae98b53dd2af0d41 schema:name Springer Nature - SN SciGraph project
63 rdf:type schema:Organization
64 N466cc343f8104d1ab7b78d08bc161000 rdf:first N7709ce96cab3491495c03d8348a1ecaa
65 rdf:rest rdf:nil
66 N5a82d9d4f99a4633b88229243228afd4 schema:name readcube_id
67 schema:value ee6a90d9534b8bc2076153fb32bd38a5bd7fb115183d5036cc735e103c624104
68 rdf:type schema:PropertyValue
69 N7709ce96cab3491495c03d8348a1ecaa schema:affiliation https://www.grid.ac/institutes/grid.9909.9
70 schema:familyName Meyer
71 schema:givenName Peter
72 rdf:type schema:Person
73 N8259fdb15f3a402abf6530d4e81f9c5c schema:name nlm_unique_id
74 schema:value 9423533
75 rdf:type schema:PropertyValue
76 N9837b1dbe11e431f9055a937383231db schema:name pubmed_id
77 schema:value 30734200
78 rdf:type schema:PropertyValue
79 Nb1463648e5604e059e7a98dff7510871 rdf:first N17ba2924a386484a83c24f43e120f329
80 rdf:rest N466cc343f8104d1ab7b78d08bc161000
81 Nb6dbec59ef0b4f2e83887cc744ee7b39 schema:issueNumber 4
82 rdf:type schema:PublicationIssue
83 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
84 schema:name Biological Sciences
85 rdf:type schema:DefinedTerm
86 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
87 schema:name Genetics
88 rdf:type schema:DefinedTerm
89 sg:journal.1106201 schema:issn 1073-6085
90 1559-0305
91 schema:name Molecular Biotechnology
92 rdf:type schema:Periodical
93 sg:pub.10.1186/gb-2005-6-6-r51 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044616441
94 https://doi.org/10.1186/gb-2005-6-6-r51
95 rdf:type schema:CreativeWork
96 sg:pub.10.1186/s13059-017-1263-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1086319949
97 https://doi.org/10.1186/s13059-017-1263-6
98 rdf:type schema:CreativeWork
99 https://app.dimensions.ai/details/publication/pub.1075071608 schema:CreativeWork
100 https://app.dimensions.ai/details/publication/pub.1075259843 schema:CreativeWork
101 https://doi.org/10.1006/meth.2001.1262 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027621591
102 rdf:type schema:CreativeWork
103 https://doi.org/10.1016/j.cell.2005.11.035 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029082447
104 rdf:type schema:CreativeWork
105 https://doi.org/10.1046/j.1365-313x.1998.00343.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1013777935
106 rdf:type schema:CreativeWork
107 https://doi.org/10.1073/pnas.0608258103 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024865754
108 rdf:type schema:CreativeWork
109 https://doi.org/10.1073/pnas.1113666109 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032009996
110 rdf:type schema:CreativeWork
111 https://doi.org/10.1093/nar/gkg041 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022714883
112 rdf:type schema:CreativeWork
113 https://doi.org/10.1101/gad.1231804 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003418073
114 rdf:type schema:CreativeWork
115 https://doi.org/10.1104/pp.104.046367 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048724335
116 rdf:type schema:CreativeWork
117 https://doi.org/10.1104/pp.108.128488 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020341522
118 rdf:type schema:CreativeWork
119 https://doi.org/10.1104/pp.16.01933 schema:sameAs https://app.dimensions.ai/details/publication/pub.1079403070
120 rdf:type schema:CreativeWork
121 https://doi.org/10.1111/j.1365-313x.2007.03052.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1017080796
122 rdf:type schema:CreativeWork
123 https://doi.org/10.1111/j.1365-313x.2012.05051.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1026378886
124 rdf:type schema:CreativeWork
125 https://doi.org/10.1111/tpj.12159 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052777578
126 rdf:type schema:CreativeWork
127 https://doi.org/10.1111/tpj.12306 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007442204
128 rdf:type schema:CreativeWork
129 https://doi.org/10.1371/journal.pone.0040203 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046973301
130 rdf:type schema:CreativeWork
131 https://doi.org/10.2174/1389202917666160520103914 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069178847
132 rdf:type schema:CreativeWork
133 https://doi.org/10.3389/fmicb.2016.01329 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035174930
134 rdf:type schema:CreativeWork
135 https://www.grid.ac/institutes/grid.412093.d schema:alternateName Helwan University
136 schema:name Botany and Microbiology department, Faculty of Science, Helwan University, Cairo, Egypt
137 rdf:type schema:Organization
138 https://www.grid.ac/institutes/grid.9909.9 schema:alternateName University of Leeds
139 schema:name Center for Plant Sciences, University of Leeds, LS2 9JT, Leeds, UK
140 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...