Ontology type: schema:ScholarlyArticle
2017-11
AUTHORSFan Zhang, Nan Huang, Li Zhou, Wenjing Cui, Zhongmei Liu, Longbao Zhu, Yi Liu, Zhemin Zhou
ABSTRACTPhenylalanine ammonia lyase from Anabaena variabilis (Av-PAL) is a candidate for the treatment of phenylketonuria (PKU). However, Av-PAL shows its optimal pH at 8.5 and maintains only 70% of its highest activity when pH decreases to 7.3-7.4 (the condition of human plasma). The objective of the study was to shift its optimal pH by mutating surface amino acid residues which interact with the general base Tyr78. Based on the crystal structure and the online program GETAREA, we selected five sites: Asn69, Glu72, Glu75, Asn89, and Val90. Removing negative charges or introducing positive charges near the general base Tyr78 by mutation, the pH optima were successfully shifted to more acidic range. Especially, the pH optima of E75A, E75L, and E75Q were shifted to 7.5 with 35, 30, and 24% higher specific activities than that of the wild, respectively. Half-lives of E75L and E75Q at 70 °C prolonged to 190 and 180 min from 130 min of the wild, respectively. In addition, the higher resistance to a low pH of 3.5 and protease made E75L a candidate for oral medicine of PKU. This work would improve the therapeutic prospect of Av-PAL and provide guidance in modulating optimal pH of enzymes. More... »
PAGES699-711
http://scigraph.springernature.com/pub.10.1007/s12010-017-2458-8
DOIhttp://dx.doi.org/10.1007/s12010-017-2458-8
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1084033654
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/28343264
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1117",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Public Health and Health Services",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Anabaena variabilis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Catalytic Domain",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Enzyme Stability",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Hydrogen-Ion Concentration",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Kinetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Models, Molecular",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Peptide Hydrolases",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phenylalanine Ammonia-Lyase",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Solvents",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Jiangnan University",
"id": "https://www.grid.ac/institutes/grid.258151.a",
"name": [
"Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, 214122, Wuxi, China"
],
"type": "Organization"
},
"familyName": "Zhang",
"givenName": "Fan",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Jiangnan University",
"id": "https://www.grid.ac/institutes/grid.258151.a",
"name": [
"Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, 214122, Wuxi, China"
],
"type": "Organization"
},
"familyName": "Huang",
"givenName": "Nan",
"id": "sg:person.01305312534.00",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01305312534.00"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Jiangnan University",
"id": "https://www.grid.ac/institutes/grid.258151.a",
"name": [
"Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, 214122, Wuxi, China"
],
"type": "Organization"
},
"familyName": "Zhou",
"givenName": "Li",
"id": "sg:person.01317022424.30",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01317022424.30"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Jiangnan University",
"id": "https://www.grid.ac/institutes/grid.258151.a",
"name": [
"Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, 214122, Wuxi, China"
],
"type": "Organization"
},
"familyName": "Cui",
"givenName": "Wenjing",
"id": "sg:person.01303557140.44",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01303557140.44"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Jiangnan University",
"id": "https://www.grid.ac/institutes/grid.258151.a",
"name": [
"Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, 214122, Wuxi, China"
],
"type": "Organization"
},
"familyName": "Liu",
"givenName": "Zhongmei",
"id": "sg:person.0660472025.99",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0660472025.99"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Anhui Polytechnic University",
"id": "https://www.grid.ac/institutes/grid.461986.4",
"name": [
"School of Biological and Chemical Engineering, Anhui Polytechnic University, 241000, Wuhu, China"
],
"type": "Organization"
},
"familyName": "Zhu",
"givenName": "Longbao",
"id": "sg:person.01166614146.29",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01166614146.29"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Xihua University",
"id": "https://www.grid.ac/institutes/grid.412983.5",
"name": [
"Key Laboratory of Food and Biotechnology, School of Food and Biotechnology, Xihua University, 610039, Chengdu, China"
],
"type": "Organization"
},
"familyName": "Liu",
"givenName": "Yi",
"id": "sg:person.01153322037.52",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01153322037.52"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Jiangnan University",
"id": "https://www.grid.ac/institutes/grid.258151.a",
"name": [
"Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, 214122, Wuxi, China"
],
"type": "Organization"
},
"familyName": "Zhou",
"givenName": "Zhemin",
"id": "sg:person.0774720425.90",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0774720425.90"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/s11033-013-2517-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005439847",
"https://doi.org/10.1007/s11033-013-2517-3"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cbpa.2009.06.013",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012325943"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.cbpa.2009.02.004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015259106"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0140-6736(13)61841-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015287370"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1042/bj2960685",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015594944"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1042/bj2960685",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015594944"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00253-009-2039-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019412379",
"https://doi.org/10.1007/s00253-009-2039-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00253-009-2039-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019412379",
"https://doi.org/10.1007/s00253-009-2039-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00253-009-2039-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019412379",
"https://doi.org/10.1007/s00253-009-2039-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00425-012-1659-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023278940",
"https://doi.org/10.1007/s00425-012-1659-1"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0062352",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023562565"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.68.4.1907-1913.2002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024309858"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/bab.1089",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025065094"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/protein/gzr004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025252756"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jplph.2011.10.008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026178056"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0085943",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026640834"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/(sici)1096-987x(199802)19:3<319::aid-jcc6>3.0.co;2-w",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027265275"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10529-013-1140-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027524582",
"https://doi.org/10.1007/s10529-013-1140-7"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0076-6879(03)74020-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027914988"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ymgme.2009.09.002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028399636"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11033-012-2032-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031312594",
"https://doi.org/10.1007/s11033-012-2032-y"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11033-012-2032-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031312594",
"https://doi.org/10.1007/s11033-012-2032-y"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1110/ps.062220206",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032003319"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ymgme.2011.06.016",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032535831"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1039/c5ra08196c",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033619537"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/jcc.540040211",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034193440"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jmb.2011.02.053",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035755962"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1742-4658.2006.05127.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036936321"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1742-4658.2006.05127.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036936321"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi049053+",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044615762"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi049053+",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044615762"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12010-013-0450-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046268744",
"https://doi.org/10.1007/s12010-013-0450-5"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.02612-05",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049530401"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/16.23.11382",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053642792"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi049173h",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055199594"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi049173h",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055199594"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi061774g",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055202655"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi061774g",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055202655"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi1000596",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055202982"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi1000596",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055202982"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/mic.0.28136-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060397503"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.4014/jmb1306.06068",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1071873336"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1076404380",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1079171685",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1079492139",
"type": "CreativeWork"
}
],
"datePublished": "2017-11",
"datePublishedReg": "2017-11-01",
"description": "Phenylalanine ammonia lyase from Anabaena variabilis (Av-PAL) is a candidate for the treatment of phenylketonuria (PKU). However, Av-PAL shows its optimal pH at 8.5 and maintains only 70% of its highest activity when pH decreases to 7.3-7.4 (the condition of human plasma). The objective of the study was to shift its optimal pH by mutating surface amino acid residues which interact with the general base Tyr78. Based on the crystal structure and the online program GETAREA, we selected five sites: Asn69, Glu72, Glu75, Asn89, and Val90. Removing negative charges or introducing positive charges near the general base Tyr78 by mutation, the pH optima were successfully shifted to more acidic range. Especially, the pH optima of E75A, E75L, and E75Q were shifted to 7.5 with 35, 30, and 24% higher specific activities than that of the wild, respectively. Half-lives of E75L and E75Q at 70\u00a0\u00b0C prolonged to 190 and 180\u00a0min from 130\u00a0min of the wild, respectively. In addition, the higher resistance to a low pH of 3.5 and protease made E75L a candidate for oral medicine of PKU. This work would improve the therapeutic prospect of Av-PAL and provide guidance in modulating optimal pH of enzymes.",
"genre": "research_article",
"id": "sg:pub.10.1007/s12010-017-2458-8",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.7204578",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1086169",
"issn": [
"0273-2289",
"1559-0291"
],
"name": "Applied Biochemistry and Biotechnology",
"type": "Periodical"
},
{
"issueNumber": "3",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "183"
}
],
"name": "Modulating the pH Activity Profiles of Phenylalanine Ammonia Lyase from Anabaena variabilis by Modification of Center-Near Surface Residues",
"pagination": "699-711",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"e95a534d1f5a23f000ec7ceb002269c2ff0e8fb3675c4573a8abcfd8fb308e97"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"28343264"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"8208561"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s12010-017-2458-8"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1084033654"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s12010-017-2458-8",
"https://app.dimensions.ai/details/publication/pub.1084033654"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T10:35",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000349_0000000349/records_113667_00000004.jsonl",
"type": "ScholarlyArticle",
"url": "https://link.springer.com/10.1007%2Fs12010-017-2458-8"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s12010-017-2458-8'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s12010-017-2458-8'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s12010-017-2458-8'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s12010-017-2458-8'
This table displays all metadata directly associated to this object as RDF triples.
272 TRIPLES
21 PREDICATES
74 URIs
30 LITERALS
18 BLANK NODES