Ontology type: schema:ScholarlyArticle
2015-05-13
AUTHORSPriyanka Mishra, L. Dinesh Kumar, Amit Kumar, Sivaraman Gokul, Kaliamoorthy Ravikumar, Ashutosh K. Shukla, Velusamy Sundaresan
ABSTRACTDecalepis arayalpathra, a critically endangered plant species, has a restricted and fragmented population in Southern Western Ghats, India. This study is a first attempt to evaluate genetic diversity and population structure in the nine wild populations of D. arayalpathra based on molecular pattern realized through the marker assays. Principal coordinate analysis (PCoA) and Nei’s unweighted pair-group method with arithmetic average (UPGMA)-based hierarchical clustering of both the marker assays suggest strong genetic clustering between the individuals corresponding to their geographical ranges. Mantel test also corroborates a close genetic proximity between genetic and geographic data (r = 0.389). Population genetic analysis revealed low levels of gene flow [inter-simple sequence repeat (ISSR) = 0.289 and random amplified polymorphic DNA (RAPD) = 0.847] between the populations, in line with high genetic differentiation (Gst = 0.531 with ISSR and 0.440 with RAPD), which was also supported by analysis of molecular variance (AMOVA), that 54 % (ISSR) and 64 % (RAPD) total variation resided within populations. Bayesian model-based STRUCTURE analysis detected three genetic clusters showing the high degree of admixture within population. Based on the findings, such as inbreeding depression and the loss of genetic diversity, suggestions for conservation strategies are provided to preserve the genetic resources of this endangered species. More... »
PAGES1413-1430
http://scigraph.springernature.com/pub.10.1007/s12010-015-1654-7
DOIhttp://dx.doi.org/10.1007/s12010-015-1654-7
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1028857286
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/25969156
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Apocynaceae",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Bayes Theorem",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genetics, Population",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Geography",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "India",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Microsatellite Repeats",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Polymorphism, Genetic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Population Dynamics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Principal Component Analysis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Random Amplified Polymorphic DNA Technique",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Department of Plant Biology and Systematics, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, Research Centre, 560065, Bangalore, India",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Department of Plant Biology and Systematics, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, Research Centre, 560065, Bangalore, India"
],
"type": "Organization"
},
"familyName": "Mishra",
"givenName": "Priyanka",
"id": "sg:person.01271047611.07",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01271047611.07"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Plant Biology and Systematics, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, Research Centre, 560065, Bangalore, India",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Department of Plant Biology and Systematics, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, Research Centre, 560065, Bangalore, India"
],
"type": "Organization"
},
"familyName": "Kumar",
"givenName": "L. Dinesh",
"id": "sg:person.01271463675.97",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01271463675.97"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Plant Biology and Systematics, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, Research Centre, 560065, Bangalore, India",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Department of Plant Biology and Systematics, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, Research Centre, 560065, Bangalore, India"
],
"type": "Organization"
},
"familyName": "Kumar",
"givenName": "Amit",
"id": "sg:person.0613556711.16",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0613556711.16"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "School for Conservation of Natural Resources, Repository for Medicinal Resources I-AIM (FRLHT), 560106, Bangalore, India",
"id": "http://www.grid.ac/institutes/None",
"name": [
"School for Conservation of Natural Resources, Repository for Medicinal Resources I-AIM (FRLHT), 560106, Bangalore, India"
],
"type": "Organization"
},
"familyName": "Gokul",
"givenName": "Sivaraman",
"id": "sg:person.0661672111.03",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0661672111.03"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "School for Conservation of Natural Resources, Repository for Medicinal Resources I-AIM (FRLHT), 560106, Bangalore, India",
"id": "http://www.grid.ac/institutes/None",
"name": [
"School for Conservation of Natural Resources, Repository for Medicinal Resources I-AIM (FRLHT), 560106, Bangalore, India"
],
"type": "Organization"
},
"familyName": "Ravikumar",
"givenName": "Kaliamoorthy",
"id": "sg:person.01043756701.74",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01043756701.74"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Biotechnology Division, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, 226015, Lucknow, India",
"id": "http://www.grid.ac/institutes/grid.417631.6",
"name": [
"Biotechnology Division, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, 226015, Lucknow, India"
],
"type": "Organization"
},
"familyName": "Shukla",
"givenName": "Ashutosh K.",
"id": "sg:person.0746716663.99",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0746716663.99"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Plant Biology and Systematics, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, Research Centre, 560065, Bangalore, India",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Department of Plant Biology and Systematics, CSIR\u2014Central Institute of Medicinal and Aromatic Plants, Research Centre, 560065, Bangalore, India"
],
"type": "Organization"
},
"familyName": "Sundaresan",
"givenName": "Velusamy",
"id": "sg:person.01036114351.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01036114351.22"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/978-1-4757-2504-9_9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1089751767",
"https://doi.org/10.1007/978-1-4757-2504-9_9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1007528101452",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020688090",
"https://doi.org/10.1023/a:1007528101452"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s001220051046",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044581378",
"https://doi.org/10.1007/s001220051046"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12686-011-9548-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014160842",
"https://doi.org/10.1007/s12686-011-9548-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-4684-9063-3_14",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009223925",
"https://doi.org/10.1007/978-1-4684-9063-3_14"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1017213630972",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016322897",
"https://doi.org/10.1023/a:1017213630972"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10592-012-0393-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039041477",
"https://doi.org/10.1007/s10592-012-0393-3"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf02772892",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013367726",
"https://doi.org/10.1007/bf02772892"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00606-013-0970-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039892575",
"https://doi.org/10.1007/s00606-013-0970-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12374-013-0106-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023491318",
"https://doi.org/10.1007/s12374-013-0106-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10592-010-0113-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053435341",
"https://doi.org/10.1007/s10592-010-0113-9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1009680614564",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020979465",
"https://doi.org/10.1023/a:1009680614564"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s13213-014-0919-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036294146",
"https://doi.org/10.1007/s13213-014-0919-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10592-011-0286-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011664470",
"https://doi.org/10.1007/s10592-011-0286-x"
],
"type": "CreativeWork"
}
],
"datePublished": "2015-05-13",
"datePublishedReg": "2015-05-13",
"description": "Decalepis arayalpathra, a critically endangered plant species, has a restricted and fragmented population in Southern Western Ghats, India. This study is a first attempt to evaluate genetic diversity and population structure in the nine wild populations of D. arayalpathra based on molecular pattern realized through the marker assays. Principal coordinate analysis (PCoA) and Nei\u2019s unweighted pair-group method with arithmetic average (UPGMA)-based hierarchical clustering of both the marker assays suggest strong genetic clustering between the individuals corresponding to their geographical ranges. Mantel test also corroborates a close genetic proximity between genetic and geographic data (r\u2009=\u20090.389). Population genetic analysis revealed low levels of gene flow [inter-simple sequence repeat (ISSR)\u2009=\u20090.289 and random amplified polymorphic DNA (RAPD)\u2009=\u20090.847] between the populations, in line with high genetic differentiation (Gst\u2009=\u20090.531 with ISSR and 0.440 with RAPD), which was also supported by analysis of molecular variance (AMOVA), that 54\u00a0% (ISSR) and 64\u00a0% (RAPD) total variation resided within populations. Bayesian model-based STRUCTURE analysis detected three genetic clusters showing the high degree of admixture within population. Based on the findings, such as inbreeding depression and the loss of genetic diversity, suggestions for conservation strategies are provided to preserve the genetic resources of this endangered species.",
"genre": "article",
"id": "sg:pub.10.1007/s12010-015-1654-7",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1086169",
"issn": [
"0273-2289",
"1559-0291"
],
"name": "Applied Biochemistry and Biotechnology",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "5",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "176"
}
],
"keywords": [
"unweighted pair group method",
"Western Ghats",
"genetic diversity",
"steno-endemic species",
"Bayesian model-based STRUCTURE analysis",
"southern Western Ghats",
"high genetic differentiation",
"model-based structure analysis",
"population genetic analyses",
"fragmented populations",
"conservation strategies",
"conservation implications",
"endemic species",
"close genetic proximity",
"plant species",
"Mantel test",
"geographical range",
"genetic differentiation",
"pair group method",
"genetic clusters",
"gene flow",
"population structure",
"molecular variance",
"population dynamics",
"marker assays",
"inbreeding depression",
"wild populations",
"genetic clustering",
"genetic resources",
"genetic proximity",
"genetic analysis",
"Ghats",
"species",
"geographic data",
"molecular patterns",
"diversity",
"total variation",
"Decalepis",
"population",
"structure analysis",
"hierarchical clustering",
"assays",
"India",
"arithmetic average",
"venter",
"differentiation",
"first attempt",
"low levels",
"high degree",
"resources",
"dynamics",
"proximity",
"variation",
"patterns",
"admixture",
"analysis",
"loss",
"clustering",
"lines",
"clusters",
"range",
"variance",
"implications",
"average",
"strategies",
"individuals",
"levels",
"flow",
"structure",
"data",
"degree",
"study",
"findings",
"attempt",
"principals",
"suggestions",
"method",
"test",
"depression"
],
"name": "Population Dynamics and Conservation Implications of Decalepis arayalpathra (J. Joseph and V. Chandras.) Venter., a Steno Endemic Species of Western Ghats, India",
"pagination": "1413-1430",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1028857286"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s12010-015-1654-7"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"25969156"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s12010-015-1654-7",
"https://app.dimensions.ai/details/publication/pub.1028857286"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-20T07:30",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/article/article_659.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s12010-015-1654-7"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s12010-015-1654-7'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s12010-015-1654-7'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s12010-015-1654-7'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s12010-015-1654-7'
This table displays all metadata directly associated to this object as RDF triples.
284 TRIPLES
22 PREDICATES
129 URIs
107 LITERALS
17 BLANK NODES